cluster # 3844

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Anopheles gambiae
cluster # 3844 cluster # 3844 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3844#0 length = 685 sequences # 1

consensus_3844#1 length = 647 sequences # 1
consensus_3844#2 length = 590 sequences # 1

consensusID : consensus_3844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGCAGGTTTATAGCTGTGTTTACTGCAGCCACTGGCCTGTTCATGCTATCTGCATCTCCCTGCGCACGTGCAACATCAAGGAGATCGTTTCGCTGCTACCGCTGCCCCACAAACCGACGCAGTGTAGCGGTGCTGACGAACGAGAAGGGCAGCATCATGGACATCAAGACGAAGAAGCACTGTGCGCTCGATACCTGAAGTGGAGCGGTACCTGCACGACGNGACGGCAAGTTCGGGCTGTACGCTCCGTCCCGCGGCTGGGCTGGAGCTGCTCGAGCTGAAGAAGGGCTCGACGGTGAAGACGTTCATACCGAAGGTGGCGGAGNGGCGTGTTCACGGTGATCTTGCATGTTTACCTCCACGGACGAGTACGTGCTGTACTATCACAGGGGCGGAAGACGCTGCGCGTGTTCCGCACGAACGATGCGGAGATGATCGCCAATACCGCATGCAGGCGGAGCTGACGGCGATCCGCAGCACGTCGGACGGGCTGCAGCCTGGTGCTCGGTACGGTCGATGGGTGCATTTCCGTGCTGGCGATTGCCGACCGAAAGAAAGGAGGACATTGCAACAAGTNTACCTGGACANGGAGCTACCCATCGACGTGACGCCCCCATTTGGCACAGACACAAGGCTTGCAAAGCAGCAAGTGCGTCGGCTCGGGTTTCAANGGCGGGCAATGCG]

[+] EMBL AL694865             [CCGCAGGTTTATAGCTGTGTTTACTGCAGCCACTGGCCTGTTCATGCTATCTGCATCTCCCTGCGCACGTGCAACATCAAGGAGATCGTTTCGCTGCTACCGCTGCCCCACAAACCGACGCAGTGTAGCGGTGCTGACGAACGAGAAGGGCAGCATCATGGACATCAAGACGAAGAAGCACTGTGCGCTCGATACCTGAAGTGGAGCGGTACCTGCACGACGNGACGGCAAGTTCGGGCTGTACGCTCCGTCCCGCGGCTGGGCTGGAGCTGCTCGAGCTGAAGAAGGGCTCGACGGTGAAGACGTTCATACCGAAGGTGGCGGAGNGGCGTGTTCACGGTGATCTTGCATGTTTACCTCCACGGACGAGTACGTGCTGTACTATCACAGGGGCGGAAGACGCTGCGCGTGTTCCGCACGAACGATGCGGAGATGATCGCCAATACCGCATGCAGGCGGAGCTGACGGCGATCCGCAGCACGTCGGACGGGCTGCAGCCTGGTGCTCGGTACGGTCGATGGGTGCATTTCCGTGCTGGCGATTGCCGACCGAAAGAAAGGAGGACATTGCAACAAGTNTACCTGGACANGGAGCTACCCATCGACGTGACGCCCCCATTTGGCACAGACACAAGGCTTGCAAAGCAGCAAGTGCGTCGGCTCGGGTTTCAANGGCGGGCAATGCG]




>consensus_3844#0
CCGCAGGTTTATAGCTGTGTTTACTGCAGCCACTGGCCTGTTCATGCTATCTGCATCTCC
CTGCGCACGTGCAACATCAAGGAGATCGTTTCGCTGCTACCGCTGCCCCACAAACCGACG
CAGTGTAGCGGTGCTGACGAACGAGAAGGGCAGCATCATGGACATCAAGACGAAGAAGCA
CTGTGCGCTCGATACCTGAAGTGGAGCGGTACCTGCACGACGNGACGGCAAGTTCGGGCT
GTACGCTCCGTCCCGCGGCTGGGCTGGAGCTGCTCGAGCTGAAGAAGGGCTCGACGGTGA
AGACGTTCATACCGAAGGTGGCGGAGNGGCGTGTTCACGGTGATCTTGCATGTTTACCTC
CACGGACGAGTACGTGCTGTACTATCACAGGGGCGGAAGACGCTGCGCGTGTTCCGCACG
AACGATGCGGAGATGATCGCCAATACCGCATGCAGGCGGAGCTGACGGCGATCCGCAGCA
CGTCGGACGGGCTGCAGCCTGGTGCTCGGTACGGTCGATGGGTGCATTTCCGTGCTGGCG
ATTGCCGACCGAAAGAAAGGAGGACATTGCAACAAGTNTACCTGGACANGGAGCTACCCA
TCGACGTGACGCCCCCATTTGGCACAGACACAAGGCTTGCAAAGCAGCAAGTGCGTCGGC
TCGGGTTTCAANGGCGGGCAATGCG

consensusID : consensus_3844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [CCGGCGAACGGGTTCGTCGTCTGGGACTTCAATGAGGAAGGGGATCCAATCTCTACCGACGCGATCTATCTCGCGCTGCCGCACGGTGTGCGCAACATCTCCACCAAGATGACCCAGTCCAACTCGGTCATGATCAGCTCGAAGGTGGACTACGCGGTGGCGGGCGTACGCAAGAACCTGTACGTCTGGAGCGTAACGAGCCGGGCACTGTTGAAGGTGCTGGATGCGCACTTTGGGCGCATCATACAGCTGGAGGCACTCACGATCGGTGCTTGGAACAGCGTCATCACATCCAGCATTGACCGGTCGGTTAAGATCTGGAACATTAACAACATCTTCGAGCAGGTGCACGTGATCGACCGACATGAGCTGCAGATCGACAACATCAGCCTGTCGGAGAGCGGCGACCTGGCTGTGACGGTGACGCGTGGTTGCGTTGGCGTGTGGGAGATACGCACCGGTCGGCTGCTTGCTAAGCTGGCTGACAGTCCGCTTGGGGCGATTGTGACGCACGCCGAAATTACACCGGATGGACGGTACATTCTTTCTTCCGAGACGGGCAAAATATTGGTGTGGAACCGGGTGACGGAGCAGGTACTGGCAAGGGACACGCAGCCCGGCATACAGCAGATCAACTTCCTCGAGCA]

[+] EMBL BM577849             [CCGGCGAACGGGTTCGTCGTCTGGGACTTCAATGAGGAAGGGGATCCAATCTCTACCGACGCGATCTATCTCGCGCTGCCGCACGGTGTGCGCAACATCTCCACCAAGATGACCCAGTCCAACTCGGTCATGATCAGCTCGAAGGTGGACTACGCGGTGGCGGGCGTACGCAAGAACCTGTACGTCTGGAGCGTAACGAGCCGGGCACTGTTGAAGGTGCTGGATGCGCACTTTGGGCGCATCATACAGCTGGAGGCACTCACGATCGGTGCTTGGAACAGCGTCATCACATCCAGCATTGACCGGTCGGTTAAGATCTGGAACATTAACAACATCTTCGAGCAGGTGCACGTGATCGACCGACATGAGCTGCAGATCGACAACATCAGCCTGTCGGAGAGCGGCGACCTGGCTGTGACGGTGACGCGTGGTTGCGTTGGCGTGTGGGAGATACGCACCGGTCGGCTGCTTGCTAAGCTGGCTGACAGTCCGCTTGGGGCGATTGTGACGCACGCCGAAATTACACCGGATGGACGGTACATTCTTTCTTCCGAGACGGGCAAAATATTGGTGTGGAACCGGGTGACGGAGCAGGTACTGGCAAGGGACACGCAGCCCGGCATACAGCAGATCAACTTCCTCGAGCA]




>consensus_3844#1
CCGGCGAACGGGTTCGTCGTCTGGGACTTCAATGAGGAAGGGGATCCAATCTCTACCGAC
GCGATCTATCTCGCGCTGCCGCACGGTGTGCGCAACATCTCCACCAAGATGACCCAGTCC
AACTCGGTCATGATCAGCTCGAAGGTGGACTACGCGGTGGCGGGCGTACGCAAGAACCTG
TACGTCTGGAGCGTAACGAGCCGGGCACTGTTGAAGGTGCTGGATGCGCACTTTGGGCGC
ATCATACAGCTGGAGGCACTCACGATCGGTGCTTGGAACAGCGTCATCACATCCAGCATT
GACCGGTCGGTTAAGATCTGGAACATTAACAACATCTTCGAGCAGGTGCACGTGATCGAC
CGACATGAGCTGCAGATCGACAACATCAGCCTGTCGGAGAGCGGCGACCTGGCTGTGACG
GTGACGCGTGGTTGCGTTGGCGTGTGGGAGATACGCACCGGTCGGCTGCTTGCTAAGCTG
GCTGACAGTCCGCTTGGGGCGATTGTGACGCACGCCGAAATTACACCGGATGGACGGTAC
ATTCTTTCTTCCGAGACGGGCAAAATATTGGTGTGGAACCGGGTGACGGAGCAGGTACTG
GCAAGGGACACGCAGCCCGGCATACAGCAGATCAACTTCCTCGAGCA

consensusID : consensus_3844#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [CCCGGCATACAGCAGATCAACTTTCTCGAGCACGGTGCAAAGTATCTGACCGTTTCGTGTCCACAAGCGACGAGCGGTTCCAGCACGGCTACCAGTGGGCCAGGTGGGACCGGCACCGGCCCGGACGACAATGGCATACAGGCGCACGCGATCGTGCGCAGCCTTCCCGATGGGGGGATCGTATTTTCGTACGACTATCCGGTACGTTTGGTACCCGGGTTACCGTTCCGGTGTGCCGTCATATCCGCCGACGGCCAACACATCCTGTGTGCTTCGACCGACAAGAACGGAAAGGATGCGATTGCCGTGTTTAACGCAGCCACTGGCCTGTTCATGCATCGCATCTCCCTGCGCACGTGCAACATCAAGGAGATCGTGTCGCTGCTGCCGCTGCCCCACAAACCGACGCAGGTGGCGGTGCTGACGAACGAGAAGGGCAGCATCATGGACATAAGACGAAGAAGCACGTGCGCTCGATACCGAAGTGGAGCGGTACCTGCACGACGGACGGCAAGTTCGGGCTGTACGCCCCGTCCCGCGGCGGGCTGGAGCTGCTCGAGCTGAAGAAGGGCTCGACGGTGAAGACGTTC]

[+] EMBL BX612210             [CCCGGCATACAGCAGATCAACTTTCTCGAGCACGGTGCAAAGTATCTGACCGTTTCGTGTCCACAAGCGACGAGCGGTTCCAGCACGGCTACCAGTGGGCCAGGTGGGACCGGCACCGGCCCGGACGACAATGGCATACAGGCGCACGCGATCGTGCGCAGCCTTCCCGATGGGGGGATCGTATTTTCGTACGACTATCCGGTACGTTTGGTACCCGGGTTACCGTTCCGGTGTGCCGTCATATCCGCCGACGGCCAACACATCCTGTGTGCTTCGACCGACAAGAACGGAAAGGATGCGATTGCCGTGTTTAACGCAGCCACTGGCCTGTTCATGCATCGCATCTCCCTGCGCACGTGCAACATCAAGGAGATCGTGTCGCTGCTGCCGCTGCCCCACAAACCGACGCAGGTGGCGGTGCTGACGAACGAGAAGGGCAGCATCATGGACATAAGACGAAGAAGCACGTGCGCTCGATACCGAAGTGGAGCGGTACCTGCACGACGGACGGCAAGTTCGGGCTGTACGCCCCGTCCCGCGGCGGGCTGGAGCTGCTCGAGCTGAAGAAGGGCTCGACGGTGAAGACGTTC]




>consensus_3844#2
CCCGGCATACAGCAGATCAACTTTCTCGAGCACGGTGCAAAGTATCTGACCGTTTCGTGT
CCACAAGCGACGAGCGGTTCCAGCACGGCTACCAGTGGGCCAGGTGGGACCGGCACCGGC
CCGGACGACAATGGCATACAGGCGCACGCGATCGTGCGCAGCCTTCCCGATGGGGGGATC
GTATTTTCGTACGACTATCCGGTACGTTTGGTACCCGGGTTACCGTTCCGGTGTGCCGTC
ATATCCGCCGACGGCCAACACATCCTGTGTGCTTCGACCGACAAGAACGGAAAGGATGCG
ATTGCCGTGTTTAACGCAGCCACTGGCCTGTTCATGCATCGCATCTCCCTGCGCACGTGC
AACATCAAGGAGATCGTGTCGCTGCTGCCGCTGCCCCACAAACCGACGCAGGTGGCGGTG
CTGACGAACGAGAAGGGCAGCATCATGGACATAAGACGAAGAAGCACGTGCGCTCGATAC
CGAAGTGGAGCGGTACCTGCACGACGGACGGCAAGTTCGGGCTGTACGCCCCGTCCCGCG
GCGGGCTGGAGCTGCTCGAGCTGAAGAAGGGCTCGACGGTGAAGACGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3844#0      CCGCAGGTTTATAGCTGTGTTTACTGCAGCCACTGGCCTGTTCATGCTATCTGCATCTCC 60
consensus_3844#2      -----------------------------------CCCGGCATACAGCAGATCAACTTTC 25
consensus_3844#1      ---CCGGCGAACGGGTTCGTCGTCTGGG---ACTTCAATGAGGAAGGGGATCCAATCTCT 54
                                                             *   *          *  *  

consensus_3844#0      CTGCGCACG-TGCAACATCAAGGAGATCGTTTCGCTGCTACCGCTGCCCCAC-AAACCGA 118
consensus_3844#2      TCGAGCACGGTGCAAAGT--ATCTGACCGTTTCGTGTCCACAAGCG----AC-GAGCGGT 78
consensus_3844#1      ACCGACGCGATCTATCTC--GCGCTGCCGCACGGTGTGCGCAACATCTCCACCAAGATGA 112
                           * ** *  *             **    *      *         **  *   * 

consensus_3844#0      CGCAGTGTAGCG--GTGCTGACGAACGAGAAGGGCAGCATCATGGACATCAA-GACGAAG 175
consensus_3844#2      TCCAGCACGGC----TACCAGTGGGCCAGGTGGG-ACCGGCACCGGCCCGGACGACAATG 133
consensus_3844#1      CCCAGTCCAACTCGGTCATGATCAGCTCGAAGGTGGACTACGCGGTGGCGGGCGTACGCA 172
                        ***     *    *         *  *  **    *  *   *        *      

consensus_3844#0      AAGCACTGTGCGCTCGATACCTGAAGTGGAGCGGTACCTGCACGACGNGACGGCAAGTTC 235
consensus_3844#2      GCATACAG-GCGCACGCGATC--GTGCGCAGCCTTCCC--GATGGGGGGATCGTATTTTC 188
consensus_3844#1      AGAACCTGTACGTCTGGAGC---GTAACGAGCCGGGCACTGTTGAAGGTGCTGGATGCGC 229
                           * *  **   *             ***    *      *  *     * *    *

consensus_3844#0      G---GGCTGTACGCTCCGTCCCGCGGCTGGGCTGGAGCTGCT-CGAGCTGAAGAAGGGCT 291
consensus_3844#2      GTACGACTATCCGGTACGTTTGGTACCCGGGTTACCGTTCCGGTGTGCCGTCATATCCGC 248
consensus_3844#1      A---CTTTGGGCGCATCATACAGCTGGAGGCACTCACGATCGGTGCTTGGAACAGCGTCA 286
                             *   **   * *   *     **          *   *    *          

consensus_3844#0      CGACGGTGAAGACGTTCATACCGAAGGTGGCGGAGNGGCGTGTTCACGGTGATCTTGC-A 350
consensus_3844#2      CGACGGCCAACACATCC-TGTGTGCTTCGACCGACAAGAACGGAAAGGATGCGATTGCCG 307
consensus_3844#1      TCACATCCAGCATTGACCGGTCGGTTAAGAT---CTGGAACATTAACAACATCTTCGAGC 343
                        **    *  *    *           *        *       *        * *   

consensus_3844#0      TGTTTACCTCCACGGACGAGTACGTGCTGTACTATCACAGGGGCGGAAGACGCTGCGCGT 410
consensus_3844#2      TGTTTAACGCAGC-----------CACTGGCCTGTTCATGCATCGCATCTCCCTGCGCAC 356
consensus_3844#1      AGGTGCACGTGATCGAC-----CGACATGAGCTGCAGATCGACAACATCAGCCTGTCGGA 398
                       * *   *                   **  **             *     ***     

consensus_3844#0      GTTCCGCACGAACGATGCGGAGATGAT--CGCCAATACCGCA-TGCAGGCGGAGCTGACG 467
consensus_3844#2      GTGCAACATCAAGGAGATCGTGTCGCTGCTGCCGCTGCCCCA-CA-AACCGACGCAGGTG 414
consensus_3844#1      GAGCGGCGACCTGGCTGTGACGGTGACG-CGTGGTTGCGTTGGCGTGTGGGAGATACGCA 457
                      *  *  *      *       *  *     *    * *            *         

consensus_3844#0      GCGATCCGCAGCACGTCGGACGGGCTG-CAGCCTGGTGCTCGGTACGGTCGATGGGTGCA 526
consensus_3844#2      GCGGTGC-TGACGAACGAGAAGGGCAG-CATCATGG-ACATAAGACGA-----AGAAGCA 466
consensus_3844#1      CCGGTCGGCTGCTTGCTAAGCTGGCTGACAGTCCG---CTTGGGGCGATTG--TGACGCA 512
                       ** *      *          *** * **    *   *      **       *  ***

consensus_3844#0      TTTCCGTGCTGGCGATTGCCGACCGAAAGAAAGGAGGACATTGCAACAAGTNTACCTGGA 586
consensus_3844#2      ----CGTGCGCTCGAT-----ACCGAAGTGGAGCGGTAC-CTGCACGACGGACGGCAAGT 516
consensus_3844#1      ----CGCCGAAATTACACCGGATGGACGGTACATTCTTTCTTCCGAGACGGGCAAAATAT 568
                          **        *      *  **               * *   * *          

consensus_3844#0      CANGGAGCTACCCATCGAC--GTGACGCCCCCATTTGGCACAGACACAAGGCTTGCAAAG 644
consensus_3844#2      TCGGGCTGTACGCCCCGTCCCGCGGCGGGCTGGAGCTGCTCGAGCTGAAGAAGGGCTCGA 576
consensus_3844#1      TGGTGTGGAACCGGGTGACGGAGCAGGTACTGGCAAGGGACACGC---AGCCCGGCATA- 624
                          *    **     * *       *  *       *  *   *   **    **    

consensus_3844#0      CAGCAAGTGCGTCGGCTCGGGTTTCAANGGCGGGCAATGCG 685
consensus_3844#2      CGGTGAAGACGTTC--------------------------- 590
consensus_3844#1      CAGCAGATCAACTTCCTCGAGCA------------------ 647
                      * *