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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1269 fasta sequence
[GCAGAATCCCCGACGGTTTAGACAGGATATTGTGTTCCGCTGGCGCAATGTGGACCGGTGGCGANGTTGCTGCGTCTAATATCTACCCGTGGAACGACCGCACACCGGATGAGTGCACGCTTCCTGCGTGGCATACGATTTGCCCTACGCCGGAAGGGGCCACCTGGATATACATGTGTGCTGCGATGTGACGGCTGTACAAACTACGACTACACCTGGCTCCTACAACCAGCACCTGACACTGTTGCTGCGTGCCCAGCACAGGAGTCTGGTCAATCATCCTAACATACGACTGTTCTGATCTGTGACGAACTGCTGTGTCTCCCGGGGACTGTGTCAATAAAATCGCCTTCGGTCAGCCATGGCACNGGCTGTTACCAGTATCCCTGGGATTGGCCATGATCGTGTACGTGTCCAAAAAAACTGGCACCGGAAAGTTCGGANATGTTGCCGGTACGATCATCAACGTGCGGTACGTTGCTTACAGCGGCACACTGTACTTGACGGTCACGATGGAAACGGAATGCGATACGTAACGAATCGGCGCAGTATTGATACGCGCACAGATTCCTGACTGCGAGGAGGACACTTGTGCTGGCCAATCCAACGGTACGGAGTGGANGGATGCGATTCTTACATNCACAATTTTACCCGCATCGTACGTTTCCGGGGCATGATATACAGGAACTGCTGCGGTGAACCGTCACGCATCCGCAACTTCCAGCTCACGGGGACCGGTTATCGACCCGTCNTGGTCTACCNGTTTACCAACCGGCTGACATGGGATACCGAAACCGAACGGCTTGACCTGGGATTCACAAGTTGGGGGACTTGACAGAACGGTACTAAGGATAAGACCCCGGAAGCNGTGCATGAANGGAACGCCAATCCCNGCCCNGGGNTNCCTTGGCAGACNTNNACAGTAAAGCCAACTGTTACGGGTTNTGCACATNGTACGCATCAACGTNGGATGGGGNGTNAATACGCGGGGNGGCACCNAAATAAAGNGCCACGTTCTCCGTAGCACACACTCNCCNGTNCTCGGGCGTANCGTNTGTGTAAAATGCNGACACCCACCGTGGTACACGAGGGTTTCCANGCCACCNAGGNCAACANCTAGATAGNGGATGTGGACCTAAACNATAGTGGCAAAACACAGAAGNCGAANTGCTACGAGATGAACAACCAGTGACGAATCAAGTNATNTGGATGAGGGAGCACAANTCTCTCNNTCTTTTGCTTGCAGAAGATGNCAAAGNNATATCGTGA]
[+] EMBL AL695057 [GCAGAATCCCCGACGGTTTAGACAGGATATTGTGTTCCGCTGGCGCAATGTGGACCGGTGGCGANGTTGCTGCGTCTAATATCTACCCGTGGAACGACCGCACACCGGATGAGTGCACGCTTCCTGCGTGGCATACGATTTGCCCTACGCCGGAAGGGGCCACCTGGATATACATGTGTGCTGCGATGTGACGGCTGTACAAACTACGACTACACCTGGCTCCTACAACCAGCACCTGACACTGTTGCTGCGTGCCCAGCACAGGAGTCTGGTCAATCATCCTAACATACGACTGTTCTGATCTGTGACGAACTGCTGTGTCTCCCGGGGACTGTGTCAATAAAATCGCCTTCGGTCAGCCATGGCACNGGCTGTTACCAGTATCCCTGGGATTGGCCATGATCGTGTACGTGTCCAAAAAAACTGGCACCGGAAAGTTCGGANATGTTGCCGGTACGATCATCAACGTGCGGTACGTTGCTTACAGCGGCACACTGTACTTGACGGTCACGATGGAAACGGAATGCGATACGTAACGAATCGGCGCAGTATTGATACGCGCACAGATTCCTGACTGCGAGGAGGACACTTGTGCTGGCCAATCCAACGGTACGGAGTGGANGGATGCGATTCTTACATNCACAATTTTACCCGCATCGTACGTTTCCGGGGCATGATATACAGGAACTGCTGCGGTGAACCGTCACGCATCCGCAACTTCCAGCTCACGGGGACCGGTTATCGACCCGTCNTGGTCTACCNGTTTACCAACCGGCTGACATGGGATACCGAAACCGAACGGCTTGACCTGGGATTCACAAGTTGGGGGACTTGACAGAACGGTACTAAGGATAAGACCCCGGAAGCNGTGCATGAANGGAACGCCAATCCCNGCCCNGGGNTNCCTTGGCAGACNTNNACAGTAAAGCCAACTGTTACGGGTTNTGCACATNGTACGCATCAACGTNGGATGGGGNGTNAATACGCGGGGNGGCACCNAAATAAAGNGCCACGTTCTCCGTAGCACACACTCNCCNGTNCTCGGGCGTANCGTNTGTGTAAAATGCNGACACCCACCGTGGTACACGAGGGTTTCCANGCCACCNAGGNCAACANCTAGATAGNGGATGTGGACCTAAACNATAGTGGCAAAACACAGAAGNCGAANTGCTACGAGATGAACAACCAGTGACGAATCAAGTNATNTGGATGAGGGAGCACAANTCTCTCNNTCTTTTGCTTGCAGAAGATGNCAAAGNNATATCGTGA]
consensusID : consensus_3860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence
[TCCTAACATACGCCTGTTCGATCGGACTAACTGTGGTCTCCCGGGTACGGTCAATAAAATCGCCTTCGGTCAGCAGGCACGGCTGTTCCAGTATCCCTGGATGGCCATGATCGTGTACGTGTCCAACACAACCGGCACGGAAAGTTCGGAATGTGCCGGTACGATCATCAACGTGCGGTACGTGCTTACAGCGGCACACTGTATCGACGGTCAGATGGAACGGATGCGATACGTACGAATCGGAGAGTACGATACGCGTACAGATCCTGACTGCGAGTAGGACACTTGCGCTGCGCCAATCCAACGCTACGGAGTGGAGGATGCGATCTTCCATCCCAACTTTACCCGCATCGTACGTTCCGGGCATGATATCGGACTGCTGCGGTTGAACCGTTCGATCGATTTCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTTTACCACCGGGCTGATGGGATTCGATCCGACGCTGTACTGGATTACGGGTTGGGGTCTGACGGAGCGGCTCGAGGTCAGCCCGGTGCTGCTGCAGGCACGCATCCCGCCCGTGTCCTGCAGTCTGAGCAGCTACGCCATCTGTGCCGGGTTTGGCAATGCGACGCTTCACTGTGAGGGTGATTCGGGCGGCCCGATGAAGGCGCAGGTGCCGGAGTACAACTTCCGGTTCGTGCAGTACGGTGTGATATCGGCCGGACCGCGTTGTGGCACGCAGGGTGTGCCCGGCATCAGTTCCCGC]
[+] EMBL BX608820 [TCCTAACATACGCCTGTTCGATCGGACTAACTGTGGTCTCCCGGGTACGGTCAATAAAATCGCCTTCGGTCAGCAGGCACGGCTGTTCCAGTATCCCTGGATGGCCATGATCGTGTACGTGTCCAACACAACCGGCACGGAAAGTTCGGAATGTGCCGGTACGATCATCAACGTGCGGTACGTGCTTACAGCGGCACACTGTATCGACGGTCAGATGGAACGGATGCGATACGTACGAATCGGAGAGTACGATACGCGTACAGATCCTGACTGCGAGTAGGACACTTGCGCTGCGCCAATCCAACGCTACGGAGTGGAGGATGCGATCTTCCATCCCAACTTTACCCGCATCGTACGTTCCGGGCATGATATCGGACTGCTGCGGTTGAACCGTTCGATCGATTTCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTTTACCACCGGGCTGATGGGATTCGATCCGACGCTGTACTGGATTACGGGTTGGGGTCTGACGGAGCGGCTCGAGGTCAGCCCGGTGCTGCTGCAGGCACGCATCCCGCCCGTGTCCTGCAGTCTGAGCAGCTACGCCATCTGTGCCGGGTTTGGCAATGCGACGCTTCACTGTGAGGGTGATTCGGGCGGCCCGATGAAGGCGCAGGTGCCGGAGTACAACTTCCGGTTCGTGCAGTACGGTGTGATATCGGCCGGACCGCGTTGTGGCACGCAGGGTGTGCCCGGCATCAGTTCCCGC]
consensusID : consensus_3860#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[CCCAACTGTACCCGCATCGTACGTTCCGGGCATGATATCGGACGGCTGCGGCTGAACCGTTCGATCGATGCCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTCCACCACCGGGCTGAAGGGATCCGATCCGACGCTGGACTGGATCACGGGTTGGGGGCTGACGGAGCGGCTCGAGGTCAGCCCGGGGCTGCTGCAGGCACGCATCCCGCCCGGGGCCCGCAGTCTGAGCAGCTACGCCATCTGGGCCGGGGTGGGCAAGGCGACGCCTCACGGGGAGGGGGAACCGGGCGGCTCGAAGAAGGCGCAGGGGCCGGAGGACAACCTCCGGGCCGGGCAGGACGGGGGG]
[+] EMBL BX617872 [CCCAACTGTACCCGCATCGTACGTTCCGGGCATGATATCGGACGGCTGCGGCTGAACCGTTCGATCGATGCCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTCCACCACCGGGCTGAAGGGATCCGATCCGACGCTGGACTGGATCACGGGTTGGGGGCTGACGGAGCGGCTCGAGGTCAGCCCGGGGCTGCTGCAGGCACGCATCCCGCCCGGGGCCCGCAGTCTGAGCAGCTACGCCATCTGGGCCGGGGTGGGCAAGGCGACGCCTCACGGGGAGGGGGAACCGGGCGGCTCGAAGAAGGCGCAGGGGCCGGAGGACAACCTCCGGGCCGGGCAGGACGGGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3860#1 ------------------------------------------------------------
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 GCAGAATCCCCGACGGTTTAGACAGGATATTGTGTTCCGCTGGCGCAATGTGGACCGGTG 60
consensus_3860#1 ------------------------------------------------------------
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 GCGANGTTGCTGCGTCTAATATCTACCCGTGGAACGACCGCACACCGGATGAGTGCACGC 120
consensus_3860#1 ------------------------------------------------------------
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 TTCCTGCGTGGCATACGATTTGCCCTACGCCGGAAGGGGCCACCTGGATATACATGTGTG 180
consensus_3860#1 ------------------------------------------------------------
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 CTGCGATGTGACGGCTGTACAAACTACGACTACACCTGGCTCCTACAACCAGCACCTGAC 240
consensus_3860#1 ------------------------------------------------------------
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 ACTGTTGCTGCGTGCCCAGCACAGGAGTCTGGTCAATCATCCTAACATACGACTGTTCTG 300
consensus_3860#1 ------TCCTAACATACGCCTGTTCGATCGGACTAACTGTGGTCTCCCGGGTACGGTCAA 54
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 ATCTGTGACGAACTGCTGTGTCTCCCGGGGACTGTGTCAATAAAATCGCCTTCGGTCAGC 360
consensus_3860#1 TAAAATCGCCTTCGGTCAGCAGGCACGGCTGTTCCAGTATCCCTGGATGGCCATGATCGT 114
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 CATGGCACNGGCTGTTACCAGTATCCCTGGGATTGGCCATGATCGTGTACGTGTCCAAAA 420
consensus_3860#1 GTACGTGTCCAACACAACCGGCACGGAAAGTTCGGAATGTGCCGGTACGATCATCAACGT 174
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 AAACTGGCACCGGAAAGTTCGGANATGTTGCCGGTACGATCATCAACGTGCGGTACGTTG 480
consensus_3860#1 GCGGTACGTGCTTACAGCGGCACACTGTATCGACGGTCAGATGGAACGGATGCGATACGT 234
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 CTTACAGCGGCACACTGTACTTGACGGTCACGATGGAAACGGAATGCGATACGTAACGAA 540
consensus_3860#1 ACGAATCGGAGAGTACGATACGCGTACAGATCCTGACTGCGAGTAGGACACTTGCGCTGC 294
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 TCGGCGCAGTATTGATACGCGCACAGATTCCTGACTGCGAGGAGGACACTTGTGCTGGCC 600
consensus_3860#1 GCCAATCCAACGCTACGGAGTGGAGGATGCGATCTTCCATCCCAACTTTACCCGCATCGT 354
consensus_3860#2 ----------------------------------------CCCAACTGTACCCGCATCGT 20
consensus_3860#0 AATCCAACGGTACGGAGTGGANGGATGCGATTCTTACATNCACAATTTTACCCGCATCGT 660
* *** * ************
consensus_3860#1 ACGTTCC--GGGCATGATATC---GGACTGCTGCGGTTGAACCGT------TCGATCGAT 403
consensus_3860#2 ACGTTCC--GGGCATGATATC---GGACGGCTGCGGCTGAACCGT------TCGATCGAT 69
consensus_3860#0 ACGTTTCCGGGGCATGATATACAGGAACTGCTGCGG-TGAACCGTCACGCATCCGCAACT 719
***** * *********** * ** ******* ******** ** *
consensus_3860#1 TTCAGCTCA-GGAGAC--GTT-TCG-CCCGTCT--GTCTACCG-TTTACCACCGGGCTGA 455
consensus_3860#2 GCCAGCTCA-GGAGAC--GTT-TCG-CCCGTCT--GTCTACCG-TCCACCACCGGGCTGA 121
consensus_3860#0 TCCAGCTCACGGGGACCGGTTATCGACCCGTCNTGGTCTACCNGTTTACCAACCGGCTGA 779
******* ** *** *** *** ****** ******* * **** * ******
consensus_3860#1 --TGGGATTC---GATCCGACG--CTGTACTGGA--TTACGGGTTGGGGT--CTGACGGA 504
consensus_3860#2 --AGGGATCC---GATCCGACG--CTGGACTGGA--TCACGGGTTGGGGG--CTGACGGA 170
consensus_3860#0 CATGGGATACCGAAACCGAACGGCTTGACCTGGGATTCACAAGTTGGGGGACTTGACAGA 839
***** * * * *** ** **** * ** ******* **** **
consensus_3860#1 GCGG--CTCGAGGTCAG--CCCGGTGCTGCTGCAGGCACGCA--------TCCCGCCCGT 552
consensus_3860#2 GCGG--CTCGAGGTCAG--CCCGGGGCTGCTGCAGGCACGCA--------TCCCGCCCGG 218
consensus_3860#0 ACGGTACTAAGGATAAGACCCCGGAAGCNGTGCATGAANGGAACGCCAATCCCNGCCCNG 899
*** ** * * ** ***** **** * * * * ** ****
consensus_3860#1 GTCCT-----GCAG-TCTGAGCAGCTACGCCATCTGTGCCGGGTTTGGCAATGCG-ACGC 605
consensus_3860#2 GGCCC-----GCAG-TCTGAGCAGCTACGCCATCTGGGCCGGGGTGGGCAAGGCG-ACGC 271
consensus_3860#0 GGNTNCCTTGGCAGACNTNNACAGTAAAGCCAACTGTTACGGGTTNTGCACATNGTACGC 959
* **** * *** * **** *** **** * *** * ****
consensus_3860#1 TTCA-CT-GTGAGGGTGATTC--------GGGCGGC--CCGATGAAGGCGCAGGTGCC-- 651
consensus_3860#2 CTCA-CG-GGGAGGGGGAACC--------GGGCGGC--TCGAAGAAGGCGCAGGGGCC-- 317
consensus_3860#0 ATCAACGTNGGATGGGGNGTNAATACGCGGGGNGGCACCNAAATAAAGNGCCACGTTCTC 1019
*** * ** ** * *** *** * ** * ** *
consensus_3860#1 ---GGAGTACAACTTCCGGTTC--GTGCAGTACGGTGTGATATCGGCCGGACCGCGTTGT 706
consensus_3860#2 ---GGAGGACAACCTCCGGGCC--GGGCAGGACGGGGGG--------------------- 351
consensus_3860#0 CGTAGCACACACTCNCCNGTNCTCGGGCGTANCGTNTGTGTAAAATGCNGACACCCACCG 1079
* *** ** * * * ** **
consensus_3860#1 GGCACGCAGGGTGTGCCCGGCATCAGTTCCCGC--------------------------- 739
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 TGGTACACGAGGGTTTCCANGCCACCNAGGNCAACANCTAGATAGNGGATGTGGACCTAA 1139
consensus_3860#1 ------------------------------------------------------------
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 ACNATAGTGGCAAAACACAGAAGNCGAANTGCTACGAGATGAACAACCAGTGACGAATCA 1199
consensus_3860#1 ------------------------------------------------------------
consensus_3860#2 ------------------------------------------------------------
consensus_3860#0 AGTNATNTGGATGAGGGAGCACAANTCTCTCNNTCTTTTGCTTGCAGAAGATGNCAAAGN 1259
consensus_3860#1 ----------
consensus_3860#2 ----------
consensus_3860#0 NATATCGTGA 1269
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||