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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1154 fasta sequence
[CCGATCGGCCGTCTGGGGGCACTGTGAAATAACGATGAAATATATTGGCGGCTTGGACCCCGAACCGCTACCACTAATGGATCTCTGCAGGCGCGTCATCCGCCAGAGAATCGGCCGGACGTATCTAGAGGAACGTATACCAAACCTAGCCCTGCCGCAATCGATGAAAACCTATCTATTGTACCGGGATCGAAGATAATAAAACGTCCGACAAGCGGCTGCAGACATGCTATAGGAGAAGGGAAGGGGCTTCGATGAGTCTAACAAGGGCGAAACACCATCATCACCATGGAAAACGACAGCAAACATAACACACACATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACAGAGCAACCACCACACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAGTGCTTCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCGATAATGCGCTAACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTTTGTTTGTTAGTTTTGTTTTGCTTTACGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTTATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAATATCGGGTCTTGGGTCTCTGTAGCTATTGCGATTTAGAAGGATAGTAGCTCTAACTACTACCGTCTCACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACGATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTGCCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTTTATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCACATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGATTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCTGTACTACTTTGTGATAAAGATAAAATAGTGTAACAACATTCAAAAAAAAAAAAAAAAAAATGGTAATGTGGCCC]
[+] EMBL BM602446 [CCGATCGGCCGTCTGGGGGCACTGTGAAATAACGATGAAATATATTGGCGGCTTGGACCCCGAACCGCTACCACTAATGGATCTCTGCAGGCGCGTCATCCGCCAGAGAATCGGCCGGACGTATCTAGAGGAACGTATACCAAACCTAGCCCTGCCGCAATCGATGAAAACCTATCTATTGTACCGGGATCGAAGATAATAAAACGTCCGACAAGCGGCTGCAGACATGCTATAGGAGAAGGGAAGGGGCTTCGATGAGTCTAACAAGGGCGAAACACCATCATCACCATGGAAAACGACAGCAAACATAACACACACATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACAGAGCAACCACCACACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAGTGCTTCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCGATAATGCGCTAACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTTTGTTTGTTAGTTTTGTTTTGCTTTACGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTTATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAATATCGGGTCTTGGGTCTCTGTAGCTATTGCGATTTAGAAGGAT ]
[+] EMBL CNS08HGA [ CAAGCGGCTGCAGACATGCTATAGAAGAAGGGAAGGGGCTTCGATGAGTCTAACAAGGGCGAAACACCATCATCACCATGGAAAACGACAGCAAACATAACACACACATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACAGAGCAACCACCACACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAGTGCTTCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCGATAATGCGCTAACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAG TTTTTTTGTTTGTTAGTTTTGTTTTGCTTTGCGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTTATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAATCTCGGGTCTTGGGTCTCTGTAGCTACTGCGATTTAGAAGGATAGTAGCTCTAACTACTACCGTCTCACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACGATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTGCCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTTTATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCACATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGATTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCTGTACTACTTTGTGATAAAGATAAAATAGTGTAACAACATTCAAAAAAAAAAAAAAAAAAATGGTAATGTGGCCC]
consensusID : consensus_3861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence
[AGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGAAAACGTCCCACAAGCGGCTGCAGACATGCTATAGAAGAAGGGAAGGGGCTTCGATGAGTCTAAAAAGGGCGAAACACCATCATCACCATGGAAAACGACAGCAAACATTATAAAAAAATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACAGAGCAACCACCAAACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAAGTCTTCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCGATAATGCGTATACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTTGTTTGTTAGTTTTGTTTTGCTTTGCGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTTATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAATCTCGGGTCTTGGGTCTCTGTAGCTACTGCGATTTAGAAGGATAGTAGCTCTAACTACTACCCTCTAACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACGATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTGCCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTTTATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCACATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGATTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCTGTACTACTTTGTGATAAAGATA]
[-] EMBL CNS08HGB [AGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGAAAACGTCCCACAAGCGGCTGCAGACATGCTATAGAAGAAGGGAAGGGGCTTCGATGAGTCTAAAAAGGGCGAAACACCATCATCACCATGGAAAACGACAGCAAACATTATAAAAAAATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACAGAGCAACCACCAAACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAAGTCTTCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCGATAATGCGTATACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTTGTTTGTTAGTTTTGTTTTGCTTTGCGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTTATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAATCTCGGGTCTTGGGTCTCTGTAGCTACTGCGATTTAGAAGGATAGTAGCTCTAACTACTACCCTCTAACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACGATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTGCCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTTTATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCACATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGATTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCTGTACTACTTTGTGATAAAGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3861#0 CCGATCGGCCGTCTGGGGGCACTGTGAAATAACGATGAAATATATTGGCGGCTTGGACCC 60
consensus_3861#1 ------------------------------------------------------------
consensus_3861#0 CGAACCGCTACCACTAATGGATCTCTGCAGGCGCGTCATCCGCCAGAGAATCGGCCGGAC 120
consensus_3861#1 ------------------------------------------------------------
consensus_3861#0 GTATCTAGAGGAACGTATACCAAACCTAGCCCTGCCGCAATCGATGAAAACCTATCTATT 180
consensus_3861#1 -----------------------------AGCTGCGGAATTCCTCGAGAACTG--TTGGC 29
**** * * ** ** *** *
consensus_3861#0 GTACCGGGATCGAAGATAATAAAACGTCCGACAAGCGGCTGCAGACATGCTATAGGAGAA 240
consensus_3861#1 CTACTGG-------------AAAACGTCCCACAAGCGGCTGCAGACATGCTATAGAAGAA 76
*** ** ********* ************************* ****
consensus_3861#0 GGGAAGGGGCTTCGATGAGTCTAACAAGGGCGAAACACCATCATCACCATGGAAAACGAC 300
consensus_3861#1 GGGAAGGGGCTTCGATGAGTCTAAAAAGGGCGAAACACCATCATCACCATGGAAAACGAC 136
************************ ***********************************
consensus_3861#0 AGCAAACATAACACACACATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACA 360
consensus_3861#1 AGCAAACATTATAAAAAAATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACA 196
********* * * * * ******************************************
consensus_3861#0 GAGCAACCACCACACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAGTGCT 420
consensus_3861#1 GAGCAACCACCAAACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAAGTCT 256
************ ****************************************** **
consensus_3861#0 TCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCG 480
consensus_3861#1 TCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCG 316
************************************************************
consensus_3861#0 ATAATGCGCTAACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTTTGT 540
consensus_3861#1 ATAATGCGTATACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTT-GT 375
******** ********************************************** **
consensus_3861#0 TTGTTAGTTTTGTTTTGCTTTACGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTT 600
consensus_3861#1 TTGTTAGTTTTGTTTTGCTTTGCGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTT 435
********************* **************************************
consensus_3861#0 ATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAAT 660
consensus_3861#1 ATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAAT 495
************************************************************
consensus_3861#0 ATCGGGTCTTGGGTCTCTGTAGCTATTGCGATTTAGAAGGATAGTAGCTCTAACTACTAC 720
consensus_3861#1 CTCGGGTCTTGGGTCTCTGTAGCTACTGCGATTTAGAAGGATAGTAGCTCTAACTACTAC 555
************************ **********************************
consensus_3861#0 CGTCTCACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACG 780
consensus_3861#1 CCTCTAACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACG 615
* *** ******************************************************
consensus_3861#0 ATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTG 840
consensus_3861#1 ATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTG 675
************************************************************
consensus_3861#0 CCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTT 900
consensus_3861#1 CCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTT 735
************************************************************
consensus_3861#0 TATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCA 960
consensus_3861#1 TATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCA 795
************************************************************
consensus_3861#0 CATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGA 1020
consensus_3861#1 CATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGA 855
************************************************************
consensus_3861#0 TTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCT 1080
consensus_3861#1 TTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCT 915
************************************************************
consensus_3861#0 GTACTACTTTGTGATAAAGATAAAATAGTGTAACAACATTCAAAAAAAAAAAAAAAAAAA 1140
consensus_3861#1 GTACTACTTTGTGATAAAGATA-------------------------------------- 937
**********************
consensus_3861#0 TGGTAATGTGGCCC 1154
consensus_3861#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||