cluster # 3866

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Anopheles gambiae
cluster # 3866 cluster # 3866 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3866#0 length = 718 sequences # 2

consensus_3866#1 length = 709 sequences # 1

consensusID : consensus_3866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 718
fasta sequence

                              [TGCTGGCAGGCATAACCCGCTGGAGTCCCGCGGTAGGATGAGAGAACCAATAGTAAGGATTAAAACCGATACACAAACAAACACAAAAAAGTGGTCCACACGGTAGCGCGGGCCGGTTTGTACGCGAATATGCGGGCTTCGTTGGGCCTGCGAATCTACGACTAATGCACAAAATAGTGCAAATATCCTAATGGAAGCGTTCCGGAAAAGGGAGCCAGTGGAGGCAGAATGGACAGGGCAGATTGGGCAAATGTTTCCCGTCTCGGTGTGTGACAGTTGATGCGTAACGAACATGGCACTCGACACACGATGAGCATAATTAAATCGACATTGGTAGTGAACCGGAACACGGATGGTCAGGATACCGGCCTTAGGTCGCTAGGGCCAAGTGCATCGGGAGGAGAGGTTGGAGTGAGTGCCTGCGTGACAAGTGTGTGGCGCCTCGATGCGTAAACACATGTTGGTCAGCT--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGAAGGAGAAGTGGCAGAACAATTGGCTCGGGCAGTTTTGTAAATCCGGAGGTTGTCTTTTGCGTAGGAGCGAACAGATCACTCGGCAGGCGTGTGTGTTTGTGTAGATATACACTCGAATTCTTGTGTAAGTAGTTTCCAATTGTAATGTGTAATCGATAGTAAGGCATACGGCTACCATCACGGTTGATA]

[+] EMBL BX616508             [TGCTGGCAGGCATAACCCGCTGGAGTCCCGCGGTAGGATGAGAGAACCAATAGTAAGGATTAAAACCGATACACAAACAAACACAAAAAAGTGGTCCACACGGTAGCGCGGGCCGGTTTGTACGCGAATATGCGGGCTTCGTTGGGCCTGCGAATCTACGACTAATGCACAAAATAGTGCAAATATCCTAATGGAAGCGTTCCGGAAAAGGGAGCCAGTGGAGGCAGAATGGACAGGGCAGATTGGGCAAATGTTTCCCGTCTCGGTGTGTGACAGTTGATGCGTAACGAACATGGCACTCGACACACGATGAGCATAATTAAATCGACATTGGTAGTGAACCGGAACACGGATGGTCAGGATACCGGCCTTAGGTCGCTAGGGCCAAGTGCATCGGGAGGAGAGGTTGGAGTGAGTGCCTGCGTGACAAGTGTGTGGCGCCTCGATGCGTAAACACATGTTGGTCAGCT  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGAAGGAGAAGTGGCAGAACAATTGGCTCGGGCAGTTTTGTAAATCCGGAGGTTGTCTTTTGCGTAGGAGCGAACAGATCACTCGGCAGGCGTGTGTGTTTGTGTAGATATACACTCGAATTCTTGTGTAAGTAG                                                         ]
[+] EMBL BX608312             [                                                                                                                                                                                 TGCAAATATCCTAATGGAAGCGTTCCGGAAAAGGGAGCCAGTGGAGGCAGAATGGACAGGGCAGATTGGGCAAATGTTTCCCGTCTCGGTGTGTGACAGTTGATGCGTAACGAACATGGCACTCGACACACGATGAGCATAATTAAATCGACATCGGTAGTGAACCGGAACACGGATGGTCAGGATACCGGCCTTAGGTCGCTAGGGCCAAGTGCATCGGGAGGAGAGGTTGGAGTGAGTGCCTGCGTGACAAGTGTGTGGCGCCTCGATGCGTAAACACATGTTGGTCAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGAAGGAGAAGTGGCAGAACAATTGGCTCGGGCAGTTTTGTAAATCCGGAGGTTGTCTTTTGCGTAGGAGCGAACAGATCACTCGGCAGGCGTGTGTGTTTGTGTAGATATACACTCGAATTCTTGTGTAAGTAGTTTCCAATTGTAATGTGTAATCGATAGTAAGGCATACGGCTACCATCACGGTTGATA]




>consensus_3866#0
TGCTGGCAGGCATAACCCGCTGGAGTCCCGCGGTAGGATGAGAGAACCAATAGTAAGGAT
TAAAACCGATACACAAACAAACACAAAAAAGTGGTCCACACGGTAGCGCGGGCCGGTTTG
TACGCGAATATGCGGGCTTCGTTGGGCCTGCGAATCTACGACTAATGCACAAAATAGTGC
AAATATCCTAATGGAAGCGTTCCGGAAAAGGGAGCCAGTGGAGGCAGAATGGACAGGGCA
GATTGGGCAAATGTTTCCCGTCTCGGTGTGTGACAGTTGATGCGTAACGAACATGGCACT
CGACACACGATGAGCATAATTAAATCGACATTGGTAGTGAACCGGAACACGGATGGTCAG
GATACCGGCCTTAGGTCGCTAGGGCCAAGTGCATCGGGAGGAGAGGTTGGAGTGAGTGCC
TGCGTGACAAGTGTGTGGCGCCTCGATGCGTAAACACATGTTGGTCAGCTAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGAAGGAGAAGTGG
CAGAACAATTGGCTCGGGCAGTTTTGTAAATCCGGAGGTTGTCTTTTGCGTAGGAGCGAA
CAGATCACTCGGCAGGCGTGTGTGTTTGTGTAGATATACACTCGAATTCTTGTGTAAGTA
GTTTCCAATTGTAATGTGTAATCGATAGTAAGGCATACGGCTACCATCACGGTTGATA

consensusID : consensus_3866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 709
fasta sequence

                              [GAGGTTANTCTCGGTGCTTTTCTCCCGGCGCAGTCATTAGCTTAAAACCTTTTCACCCATCCCCCTTTGCTCTGGTGGGGGGACCATTTGTATGATGGGAATGATTTATGGACGATTTTCCATAATCGATGACAGTATCGGGCAGGATAATATTTTCAAATTAAATATCTGTCCCAAACGACTCCCTCCCTAGTGGTTCAAATGCTGGAGCGCAAATGGAGTGCTGGCAGGCATAAACCGTAGAGTNCCGCGGTAGGATGAGAGAACCAATAGCAAGGATTAAGACCGATACACAAACAAAACACAAAAAAGTGGTCCACACGGTAGACGCGGGCCGGTTCGTGCCGCGAATATGCGGGCCTTACGCATGGGCCTGCGAATCTACGACTAATGCNCAAAAATATGCAACACTATCCTANATGGAAGCGTTCCGGGACAAAGGGGNAAACGGGGNAAGCCAGCTGCGACGTGGACCAGCAAAATTGGGGAACCCAAGGGGGCCCACGCAATTATGGGGAGGCCAAAAAATAGGTCATTCCCCCCGGCGTCCTCACCNCACTGCTTAGTTNCAACCNCGACCTACGGCAATCGNCNCGTTAAAANCGCGCACACCAATTGGGNCCACACCTACCCACCCAACCACNGCCAATTCGAACGACCCATTACAATATTTACAANCTNNCCGGAGCCCANNACCACGGCTCAACTA]

[+] EMBL AL695139             [GAGGTTANTCTCGGTGCTTTTCTCCCGGCGCAGTCATTAGCTTAAAACCTTTTCACCCATCCCCCTTTGCTCTGGTGGGGGGACCATTTGTATGATGGGAATGATTTATGGACGATTTTCCATAATCGATGACAGTATCGGGCAGGATAATATTTTCAAATTAAATATCTGTCCCAAACGACTCCCTCCCTAGTGGTTCAAATGCTGGAGCGCAAATGGAGTGCTGGCAGGCATAAACCGTAGAGTNCCGCGGTAGGATGAGAGAACCAATAGCAAGGATTAAGACCGATACACAAACAAAACACAAAAAAGTGGTCCACACGGTAGACGCGGGCCGGTTCGTGCCGCGAATATGCGGGCCTTACGCATGGGCCTGCGAATCTACGACTAATGCNCAAAAATATGCAACACTATCCTANATGGAAGCGTTCCGGGACAAAGGGGNAAACGGGGNAAGCCAGCTGCGACGTGGACCAGCAAAATTGGGGAACCCAAGGGGGCCCACGCAATTATGGGGAGGCCAAAAAATAGGTCATTCCCCCCGGCGTCCTCACCNCACTGCTTAGTTNCAACCNCGACCTACGGCAATCGNCNCGTTAAAANCGCGCACACCAATTGGGNCCACACCTACCCACCCAACCACNGCCAATTCGAACGACCCATTACAATATTTACAANCTNNCCGGAGCCCANNACCACGGCTCAACTA]




>consensus_3866#1
GAGGTTANTCTCGGTGCTTTTCTCCCGGCGCAGTCATTAGCTTAAAACCTTTTCACCCAT
CCCCCTTTGCTCTGGTGGGGGGACCATTTGTATGATGGGAATGATTTATGGACGATTTTC
CATAATCGATGACAGTATCGGGCAGGATAATATTTTCAAATTAAATATCTGTCCCAAACG
ACTCCCTCCCTAGTGGTTCAAATGCTGGAGCGCAAATGGAGTGCTGGCAGGCATAAACCG
TAGAGTNCCGCGGTAGGATGAGAGAACCAATAGCAAGGATTAAGACCGATACACAAACAA
AACACAAAAAAGTGGTCCACACGGTAGACGCGGGCCGGTTCGTGCCGCGAATATGCGGGC
CTTACGCATGGGCCTGCGAATCTACGACTAATGCNCAAAAATATGCAACACTATCCTANA
TGGAAGCGTTCCGGGACAAAGGGGNAAACGGGGNAAGCCAGCTGCGACGTGGACCAGCAA
AATTGGGGAACCCAAGGGGGCCCACGCAATTATGGGGAGGCCAAAAAATAGGTCATTCCC
CCCGGCGTCCTCACCNCACTGCTTAGTTNCAACCNCGACCTACGGCAATCGNCNCGTTAA
AANCGCGCACACCAATTGGGNCCACACCTACCCACCCAACCACNGCCAATTCGAACGACC
CATTACAATATTTACAANCTNNCCGGAGCCCANNACCACGGCTCAACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3866#0      TGCTGGCAGGCATAACCCGCTGGAGTCCCGCGGTAGGATGAGAGAACCAATAGTAAGGAT 60
consensus_3866#1      ------GAGGTTANTCTCGGTGCTTTTCTCCCG----GCGCAGTCATTAGCTTAAAACCT 50
                             ***     * ** **   * *  * *      *     *  *     **   *

consensus_3866#0      TAAAACCGATACACAAACAAACACAAAAAAGTGGTCCACACGGTAGCGCGGGCCGGTTTG 120
consensus_3866#1      TTTCACCCATCCCCC--TTTGCTCTGGTGGGGGGACCATTTGTATGATGGGAATGATTTA 108
                      *   *** ** * *       * *      * ** ***   *   *   **   * *** 

consensus_3866#0      TACGCGAATATGCGGGCTTCGTTGGGCCTGCGAATCTACGACTAATGCACAAAATAGTGC 180
consensus_3866#1      TGGACGATTTTCCATAATCGATGACAGTATCGGG--CAGGATAATATTTTCAAATTAAAT 166
                      *   *** * * *    *   *        **     * **  *       ****     

consensus_3866#0      AAATATCCTAATGGAAGCGTTCCGGAAAAGGG-AGCCAGTGGAGGCAGAATGGACAG--G 237
consensus_3866#1      ATCTGTCCCAAACGACTCCCTCCCTAGTGGTTCAAATGCTGGAGCGCAAATGGAGTGCTG 226
                      *  * *** **  **  *  ***  *   *   *     *****    ******  *  *

consensus_3866#0      GCAGAT-TGGGCAAATGTTTCCCGTCTCGGTGTGTGACAGTTGATGCGTAACGAACATGG 296
consensus_3866#1      GCAGGCATAAACCGTAGAGTNCCGCGGTAGGATGAGAGAACCAATA-GCAAGGATTAAGA 285
                      ****   *   *    *  * ***     *  ** ** *    **  * ** **  * * 

consensus_3866#0      CACTCGACACACGATGAGCATAATTAAATCG-----ACATTGGTAGTGAACCGGAACACG 351
consensus_3866#1      C-CGATACACAAACAAAACACAAAAAAGTGGTCCACACGGTAGACGCGGGCCGG--TTCG 342
                      * *   *****     * ** **  ** * *     **  * *  * *  ****    **

consensus_3866#0      GATGGTCAGGATACCGGCCTTAGGTCGCTAGGGCCAAGTGCATCGGGAGGAGAGGTTGGA 411
consensus_3866#1      TGCCGCGAATATGCGGGCCTTACGC--ATGGGCCTGCGAATCTACGACTAATGCNCAAAA 400
                          *  *  ** * ******* *    * ** *   *    *  *    *        *

consensus_3866#0      GTGAGTGCCTGCGTGACAAGTGTGTGGCGCCTCGATGCGTAAACACATGTTGGTCAGCTA 471
consensus_3866#1      ATATGCAACACTATCCTANATG-GAAGCGTTCCGGGACAAAGGGGNAAACGGGGNAAGCC 459
                       *  *   *    *   *  ** *  ***   **   *  *     *    **  *    

consensus_3866#0      GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGAAG 531
consensus_3866#1      AGCTGCGACGTGGACCAGCAAAATTGGGGAACCCAAGGGGGCCCACGCAATTATGGGGAG 519
                          * **    **     * *    * **     ** * *     *  *     ** **

consensus_3866#0      GAGAAGTGGCAGAACAATTGGCTCGGGCAGTTTTGTAAATCCGGAGGTTGTCTTTTGCGT 591
consensus_3866#1      GCCAAAAAATAGGTCA-TTCCCCCCGGCGTCCTCACCNCACTGCTTAGTTNCAACCNCGA 578
                      *  **     **  ** **  * * ***    *       * *     *  *     ** 

consensus_3866#0      AGGAGCGAACAGATCACTCGGCAGGCGTGTGTGTTTGTGTAGATATACACTCGAATTCTT 651
consensus_3866#1      CCTACGGCAATCGNCNCGTTAAAANCGCGCACACCAAT-TGGGNCCACACCTACCCACCC 637
                         *  * *     * *     *  ** *        * * *    ****       *  

consensus_3866#0      GTGTA-AGTAGTTTCCAATTGT--AATGTGTAATCGATAGTAAGGCATACGGCTACCATC 708
consensus_3866#1      AACCACNGCCAATTCGAACGACCCATTACAATATTTACAANCTNNCCGGAGCCCANNACC 697
                          *  *    *** **      * *     **  * *      *    * * *  * *

consensus_3866#0      ACGGTTGATA-- 718
consensus_3866#1      ACGGCTCAACTA 709
                      **** * *