cluster # 389

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Anopheles gambiae
cluster # 389 cluster # 389 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_389#0 length = 675 sequences # 1

consensus_389#1 length = 666 sequences # 1

consensusID : consensus_389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGTAGAGGAGAGTTGCAGAGCGATACAAATGAAGGAAAGAGGACACAGATGATGCACACTCACACATCTAGACGACAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGCCGGAGAGTCGGCCCGATTT]

[+] EMBL BM638688             [CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGTAGAGGAGAGTTGCAGAGCGATACAAATGAAGGAAAGAGGACACAGATGATGCACACTCACACATCTAGACGACAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGCCGGAGAGTCGGCCCGATTT]




>consensus_389#0
CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGT
AGAGGAGAGTTGCAGAGCGATACAAATGAAGGAAAGAGGACACAGATGATGCACACTCAC
ACATCTAGACGACAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGAT
GACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGAC
GACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCG
TATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGA
AGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGG
CTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCAT
TGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCG
GAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACAT
GATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGCCGGA
GAGTCGGCCCGATTT

consensusID : consensus_389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CCGAGAACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATTTCAGAAACAATGAAAACATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGTCGCCCGTTTCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGGCGGAGAGTCG]

[+] EMBL BM624924             [CCGAGAACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATTTCAGAAACAATGAAAACATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGTCGCCCGTTTCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGGCGGAGAGTCG]




>consensus_389#1
CCGAGAACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATTTCAGAA
ACAATGAAAACATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGTCGCCCGTT
TCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGAT
GACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGAC
GACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCG
TATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGA
AGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGG
CTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCAT
TGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCG
GAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACAT
GATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGGCGGA
GAGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_389#0      CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGT 60
consensus_389#1      -----CCGAGA-ACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATT 54
                          *   ** **  ** *  *       * *       *   **   *   ** *  *

consensus_389#0      AGAGGAGAGTTGCAGAGCGATACAAATGAAGGAA---AGAGGACACAGATGATGCACACT 117
consensus_389#1      TCAGAAACAATGAAAA--CATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGT 112
                       ** *    ** * *   ** * * **** * *   *  * *  *   ****  * * *

consensus_389#0      CACACATCTAGACGAC-----AAGACGCTAATCACCTATAAAACGGCCATGGATAAAATG 172
consensus_389#1      CGCCCGTTTCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATG 172
                     * * * * * *    *     ***************************************

consensus_389#0      TCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGA 232
consensus_389#1      TCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGA 232
                     ************************************************************

consensus_389#0      AAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATC 292
consensus_389#1      AAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATC 292
                     ************************************************************

consensus_389#0      GAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCT 352
consensus_389#1      GAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCT 352
                     ************************************************************

consensus_389#0      TCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTAC 412
consensus_389#1      TCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTAC 412
                     ************************************************************

consensus_389#0      CATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATC 472
consensus_389#1      CATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATC 472
                     ************************************************************

consensus_389#0      GAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCC 532
consensus_389#1      GAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCC 532
                     ************************************************************

consensus_389#0      ATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGG 592
consensus_389#1      ATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGG 592
                     ************************************************************

consensus_389#0      GTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTG 652
consensus_389#1      GTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTG 652
                     ************************************************************

consensus_389#0      TGGCCGGAGAGTCGGCCCGATTT 675
consensus_389#1      TGGGCGGAGAGTCG--------- 666
                     *** **********