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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence
[CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGGGTTTCTTCCCACGTTTCGCGGTCATCTGCTTGCTTGCCTCGTTCAGTGCAATCGGTGCTGCTGGGCAGCAGGAACTTTTCCCCCTGTCTATTGTGCACATTAACGACTTTCATGCCCGCTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGGGAGCGATGCATCGGTGGGTACGCCCGCACGGTGACGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACGCAATCTACCTGAACGCGGGCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACCGATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCGATGACGATCGGCAACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGACGATCGCGTCGCCGGTGCTGCTGGTAAATGTGGACAACAGTCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGGATCGGGGTGATTGGGGTCATCCTCAGCACGACCGATACAATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGAACGGAAGCGGAA]
[+] EMBL BM587283 [CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGGGTTTCTTCCCACGTTTCGCGGTCATCTGCTTGCTTGCCTCGTTCAGTGCAATCGGTGCTGCTGGGCAGCAGGAACTTTTCCCCCTGTCTATTGTGCACATTAACGACTTTCATGCCCGCTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGGGAGCGATGCATCGGTGGGTACGCCCGCACGGTGACGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACGCAATCTACCTGAACGCGGGCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACCGATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCGATGACGATCGGCAACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGACGATCGCGTCGCCGGTGCTGCTGGTAAATGTGGACAACAGTCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGGATCGGGGTGATTGGGGTCATCCTCAGCACGACCGATACAATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGAACGGAAGCGGAA]
[+] EMBL BM608792 [CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGTGTTTCTTCCCACGTTTCGCGGTCATCTGCTTGCTTGCCTCGTTCAGTGCAATCGGTGCTGCTGGGCAGCAGGAGCTTTTCCCCCTGTCTATCGTGCACATTAACGACTTTCATGCCCGCTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGTGAGCGATGCATCGGTGGGTACGCCCGCACGGTGTCGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACGCAATCTACCTGAACGCGGGCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACCGATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCAATGACGATCGGCAACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGACGATCGCTTCGCCGGTGCTGCTGGTAAATGTGGACAACAGCCTGGAACCGGAATTTAACCGGTTCAACAAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGTATCGGGGTGATTGGGGTCATCCTCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGGACGGAAGCGGA ]
consensusID : consensus_3895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence
[AGAATCCCCGAGGTTATGTACCGTTTCTGGAGACGATCGCTTCGCCGGTGCTGCTGGTAAATGTGGACAACAGCCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTGGAGCGCGGCTGTGGCTGTCGGATCGGCGTGATTGGGGTCATCCTCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGGACGGGAAGCGGAACACCTTACAGCTCGGGTTGCGATATTATCGTCGTCCTGTCGCACTGTGGCATCGATGTTGGATCGTTCGATCGCGGCGNAATTGTTGGCCGCTGGTGGACCATCCATTGTGGATGAGGCCATTCGCACAGGTTCCTGTACACCGGGCGATCATCCGACCATTCCGATGAATNCCGGTGTTCCGAATTATCAAANGGGTCGTCAGGTCAACGAACGGACATCGGGTTGCTGATCAGTGCANAGCTTCCGGCTACACAAAGACCTGGTCANGGGACATTGTGC]
[+] EMBL AL695595 [AGAATCCCCGAGGTTATGTACCGTTTCTGGAGACGATCGCTTCGCCGGTGCTGCTGGTAAATGTGGACAACAGCCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTGGAGCGCGGCTGTGGCTGTCGGATCGGCGTGATTGGGGTCATCCTCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGGACGGGAAGCGGAACACCTTACAGCTCGGGTTGCGATATTATCGTCGTCCTGTCGCACTGTGGCATCGATGTTGGATCGTTCGATCGCGGCGNAATTGTTGGCCGCTGGTGGACCATCCATTGTGGATGAGGCCATTCGCACAGGTTCCTGTACACCGGGCGATCATCCGACCATTCCGATGAATNCCGGTGTTCCGAATTATCAAANGGGTCGTCAGGTCAACGAACGGACATCGGGTTGCTGATCAGTGCANAGCTTCCGGCTACACAAAGACCTGGTCANGGGACATTGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3895#0 CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGG 60
consensus_3895#1 ------------------------------------------------------------
consensus_3895#0 GTTTCTTCCCACGTTTCGCGGTCATCTGC--TTGCTTGCCTCGTTCAGTGCAATCGGTGC 118
consensus_3895#1 --------AGAATCCCCGAGGTTATGTACCGTTTCTGGAGACGATCGCTTCG-CCGGTGC 51
* ** *** ** * * ** ** * ** ** * * ******
consensus_3895#0 TGCTGGGCAGCAGGAACTTTTCCCCCTGTCTATTGTGCACATTAACGACTTTCATGCCCG 178
consensus_3895#1 TGCTGGTAAATGTGGACAACAGCCTGGAACC-----GGAATTCAACCGGTTTAACAAGAG 106
****** * * ** ** * * * * *** *** * *
consensus_3895#0 CTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGGGAGCGATGCAT 238
consensus_3895#1 TCT---GGTGCTGGA--GCGCGGCTGTGGC---TGTCGGATCGGCGTGATTGGGGT-CAT 157
* ** * ** * *** *** * ** ** **** * * * * ***
consensus_3895#0 CGGTGGGTACGCCCG-CACGGTGACGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACG 297
consensus_3895#1 CC-TCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAG-GACGAGGTC 215
* * * *** *** *** * * * * **** ** *** ***
consensus_3895#0 CAATCTACCTGAACGCGG---GCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACC 354
consensus_3895#1 GAAACGATCCGGACGGGAAGCGGAACACCTTACAGCTCGGGTTGCGATATTATCGTCGTC 275
** * * * * *** * * *** *** *** * * ** * ** * ** *
consensus_3895#0 --GATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCGATGACGATCGG 412
consensus_3895#1 CTGTCGCACTGTGGCATCGATGTTGGATCGTTCGATCGCGGCGNAATTGTTGGCCGCTGG 335
* * * * * *** *** * * **** * * ** * **
consensus_3895#0 CA-ACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGAC-GATCGCG 470
consensus_3895#1 TGGACCATCCATT-GTGGATGAGGCCATTCGCACAG----GTTCCTGTACACCGGGCGAT 390
***** ** * *** ** * * *** *** * ** * **
consensus_3895#0 TCGCCGGTGCTGCTGGTAAATGTGGACAACAGTCTGGAACCGGAATTCAACCGGTTTAAC 530
consensus_3895#1 CATCCGACCATTCCGATGAATNCCGGT----GTTCCGAATTA----TCAAANGGGTCGTC 442
*** * * * * *** * ** *** **** ** * *
consensus_3895#0 AAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGGATCGGGGTGATTGGGGTCATCCTCAGC 590
consensus_3895#1 AG--GTC---AACGAACGGACATCGGGTTGCTGATCAGTGC-ANAGCTTCCGGCTACACA 496
* *** * * * * **** * **** * * * * * * **
consensus_3895#0 ACGACCGATACAATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATC 650
consensus_3895#1 AAGACCTGGTCANGGGACATTGTGC----------------------------------- 521
* **** ** * ** *
consensus_3895#0 CGAACGGAAGCGGAA 665
consensus_3895#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||