cluster # 3908

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Anopheles gambiae
cluster # 3908 cluster # 3908 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3908#0 length = 690 sequences # 1

consensus_3908#1 length = 490 sequences # 1
consensus_3908#2 length = 352 sequences # 1

consensusID : consensus_3908#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [AATCGCCCCGAGGTATTCAGCGTACCAATCTGGCCAACACGGTGCTGCTGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCACTTTATGGATCCACCGCCGCAGTGACAATATACTGAACTCGCTCTATCAGCTGTGGATTTTGGGTGCGCTGGATCATACCTGGGGCTGCTTACTGCCTGCTGTGGTGCTGCCAGATGGCCTGAGTTTCCTGCTCGATCCACCCCAGTGCCAGATGCTGATCGTGGCCAACTGAGATGGGATGTAGTTGAGTGAGATTTTAATCATTTGTATCGATGCTTTCCGTGCCCTCGATCTTCTACCTGTCCCAAGGGACGGGAGGAGGAAGCGGACAGTGTGCTGGGAAAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTACCAGCAGTTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGTGNAAGGCAATGCGCAAGGTGCGGGCAGCGTGCGCCAGCAGCTCANTGACATCTACAGGCCCACGCNAGCACGCCCGGCCTAACCCGCCTTGACACCTCCGCTGCCGCGCCACCGCACTTGNCGCACCNCTGGCTGCNCCCACGTTGCCCTCTGCTCGCGCGCTACTTTCTACCCNGCCCGCGCCCCCCGGCTTGCCGCGGNCCTCGCCCC]

[+] EMBL AL931824             [AATCGCCCCGAGGTATTCAGCGTACCAATCTGGCCAACACGGTGCTGCTGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCACTTTATGGATCCACCGCCGCAGTGACAATATACTGAACTCGCTCTATCAGCTGTGGATTTTGGGTGCGCTGGATCATACCTGGGGCTGCTTACTGCCTGCTGTGGTGCTGCCAGATGGCCTGAGTTTCCTGCTCGATCCACCCCAGTGCCAGATGCTGATCGTGGCCAACTGAGATGGGATGTAGTTGAGTGAGATTTTAATCATTTGTATCGATGCTTTCCGTGCCCTCGATCTTCTACCTGTCCCAAGGGACGGGAGGAGGAAGCGGACAGTGTGCTGGGAAAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTACCAGCAGTTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGTGNAAGGCAATGCGCAAGGTGCGGGCAGCGTGCGCCAGCAGCTCANTGACATCTACAGGCCCACGCNAGCACGCCCGGCCTAACCCGCCTTGACACCTCCGCTGCCGCGCCACCGCACTTGNCGCACCNCTGGCTGCNCCCACGTTGCCCTCTGCTCGCGCGCTACTTTCTACCCNGCCCGCGCCCCCCGGCTTGCCGCGGNCCTCGCCCC]




>consensus_3908#0
AATCGCCCCGAGGTATTCAGCGTACCAATCTGGCCAACACGGTGCTGCTGCTGAAGTCGC
TCGGGGTGAGCGATTTGCTGCAGTTCCACTTTATGGATCCACCGCCGCAGTGACAATATA
CTGAACTCGCTCTATCAGCTGTGGATTTTGGGTGCGCTGGATCATACCTGGGGCTGCTTA
CTGCCTGCTGTGGTGCTGCCAGATGGCCTGAGTTTCCTGCTCGATCCACCCCAGTGCCAG
ATGCTGATCGTGGCCAACTGAGATGGGATGTAGTTGAGTGAGATTTTAATCATTTGTATC
GATGCTTTCCGTGCCCTCGATCTTCTACCTGTCCCAAGGGACGGGAGGAGGAAGCGGACA
GTGTGCTGGGAAAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTAC
CAGCAGTTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGT
GNAAGGCAATGCGCAAGGTGCGGGCAGCGTGCGCCAGCAGCTCANTGACATCTACAGGCC
CACGCNAGCACGCCCGGCCTAACCCGCCTTGACACCTCCGCTGCCGCGCCACCGCACTTG
NCGCACCNCTGGCTGCNCCCACGTTGCCCTCTGCTCGCGCGCTACTTTCTACCCNGCCCG
CGCCCCCCGGCTTGCCGCGGNCCTCGCCCC

consensusID : consensus_3908#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [CAAGAATCGCCCCGAGGNNGCGGGCGCAGGCGAAGCACTGGCAGCTGGGCGGCACGAAGCTGGGCAACATTATGGGCGTGGCAAAGGATAAGGACGAGCAGGATCCGGCCGACGGGGACGATGAGGCGTACGATTCGCGCAAGGATCGTGGCCAACGAGATGGGATGTAGTGAGGAGATTTTAATCATTGTATCGATGCTTTCCGTGCCCTCGATCTTCTATCGTCCCAAGGGACGGGAGGAGGAAGCGGACAGTGTGAGGGAAAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTACCAGCAGTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGTGAAGGCAATGCGCAAGGTGCGGGAGGTGCGCCAGCAGCTCAAGGACATCTACAGCCAGCAGCAGCGGCTAACGCTGAAATCGTGCGGCACCGACTGGGACGTGGTGCGCAAGTGCATCT]

[+] EMBL AL930375             [CAAGAATCGCCCCGAGGNNGCGGGCGCAGGCGAAGCACTGGCAGCTGGGCGGCACGAAGCTGGGCAACATTATGGGCGTGGCAAAGGATAAGGACGAGCAGGATCCGGCCGACGGGGACGATGAGGCGTACGATTCGCGCAAGGATCGTGGCCAACGAGATGGGATGTAGTGAGGAGATTTTAATCATTGTATCGATGCTTTCCGTGCCCTCGATCTTCTATCGTCCCAAGGGACGGGAGGAGGAAGCGGACAGTGTGAGGGAAAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTACCAGCAGTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGTGAAGGCAATGCGCAAGGTGCGGGAGGTGCGCCAGCAGCTCAAGGACATCTACAGCCAGCAGCAGCGGCTAACGCTGAAATCGTGCGGCACCGACTGGGACGTGGTGCGCAAGTGCATCT]




>consensus_3908#1
CAAGAATCGCCCCGAGGNNGCGGGCGCAGGCGAAGCACTGGCAGCTGGGCGGCACGAAGC
TGGGCAACATTATGGGCGTGGCAAAGGATAAGGACGAGCAGGATCCGGCCGACGGGGACG
ATGAGGCGTACGATTCGCGCAAGGATCGTGGCCAACGAGATGGGATGTAGTGAGGAGATT
TTAATCATTGTATCGATGCTTTCCGTGCCCTCGATCTTCTATCGTCCCAAGGGACGGGAG
GAGGAAGCGGACAGTGTGAGGGAAAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTAC
CTGAACGTGTACCAGCAGTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGAACAC
TTCATCCACGTGAAGGCAATGCGCAAGGTGCGGGAGGTGCGCCAGCAGCTCAAGGACATC
TACAGCCAGCAGCAGCGGCTAACGCTGAAATCGTGCGGCACCGACTGGGACGTGGTGCGC
AAGTGCATCT

consensusID : consensus_3908#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [CCAGGGTTACAGCGGTCGGGCCGTGCGGGCCGTACTGGGCCCGGCAAGCGTTCCTGGCTGTACACCTGAGCGGCAGTACAAGGACGAGCTGCTGCATCTGACCTGTGCCTGTGAGATTCAGCTGTACCAATCTGGCCAACACGGTGCTGCTGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCACTTTATGGATCCACCGGACGCAGTGACAATATACTTGAACTCGCTCTATCAGCTGTGGATATATCACTGGCGTTGCTGCTTGGACCATACCGGAGCTGCTTACTGCCTGCTGGGTGCTGCCAGATGGCCGAGTTTCCGNTCGATCCACCCAGTGCCAGATGC]

[+] EMBL AL695763             [CCAGGGTTACAGCGGTCGGGCCGTGCGGGCCGTACTGGGCCCGGCAAGCGTTCCTGGCTGTACACCTGAGCGGCAGTACAAGGACGAGCTGCTGCATCTGACCTGTGCCTGTGAGATTCAGCTGTACCAATCTGGCCAACACGGTGCTGCTGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCACTTTATGGATCCACCGGACGCAGTGACAATATACTTGAACTCGCTCTATCAGCTGTGGATATATCACTGGCGTTGCTGCTTGGACCATACCGGAGCTGCTTACTGCCTGCTGGGTGCTGCCAGATGGCCGAGTTTCCGNTCGATCCACCCAGTGCCAGATGC]




>consensus_3908#2
CCAGGGTTACAGCGGTCGGGCCGTGCGGGCCGTACTGGGCCCGGCAAGCGTTCCTGGCTG
TACACCTGAGCGGCAGTACAAGGACGAGCTGCTGCATCTGACCTGTGCCTGTGAGATTCA
GCTGTACCAATCTGGCCAACACGGTGCTGCTGCTGAAGTCGCTCGGGGTGAGCGATTTGC
TGCAGTTCCACTTTATGGATCCACCGGACGCAGTGACAATATACTTGAACTCGCTCTATC
AGCTGTGGATATATCACTGGCGTTGCTGCTTGGACCATACCGGAGCTGCTTACTGCCTGC
TGGGTGCTGCCAGATGGCCGAGTTTCCGNTCGATCCACCCAGTGCCAGATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3908#0      ------------------------------------------------------------
consensus_3908#2      ------------------------------------------------------------
consensus_3908#1      CAAGAATCGCCCCGAGGNNGCGGGCGCAGGCGAAGCACTGGCAGCTGGGCGGCACGAAGC 60
                                                                                  

consensus_3908#0      ------------------------------------------------------------
consensus_3908#2      -------------------------------------CCAGGGTTACAGCGGTCGGGCCG 23
consensus_3908#1      TGGGCAACATTATGGGCGTGGCAAAGGATAAGGACGAGCAGGATC-CGGCCGACGGGGAC 119
                                                                                  

consensus_3908#0      ------------------------------------------------------------
consensus_3908#2      TGCGGGCCGTACTGGGCCCGGCAAGCGTTCCTGGCTGTACACCTGAGCGGCAGTACAAGG 83
consensus_3908#1      GATGAGGCGTAC-GATTCGCGCAAG-GATCGTGGCCAACGAGATGGGATGTAGTGAGGAG 177
                                                                                  

consensus_3908#0      -------------------AATC----GC-CCCGAGGTATTCAGC-GTACCAAT---CTG 32
consensus_3908#2      ACG--AGCTGCTGCATCTGACCT----GTGCCTGTGAGATTCAGCTGTACCAAT---CTG 134
consensus_3908#1      ATTTTAATCATTGTATCGATGCTTTCCGTGCCCTCGATCTTCTATCGTCCCAAGGGACGG 237
                                                 *  **   *   ***    ** ****    * *

consensus_3908#0      GCCAACACGGTG--CTGC-TGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCAC 89
consensus_3908#2      GCCAACACGGTG--CTGC-TGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCAC 191
consensus_3908#1      GAGGAGGAAGCGGACAGTGTGAGGGAAAAGTTCCAGGTGCCCGAATC-CGACCACCTCAC 296
                      *   *    * *  * *  **  * *   * **  ****  *** *  *  *     ***

consensus_3908#0      TTTATGGATCCACCGC-CGCAGTGACA-ATATACT-GAACTC--GCTCTATCAGCTGTGG 144
consensus_3908#2      TTTATGGATCCACCGGACGCAGTGACA-ATATACTTGAACTC--GCTCTATCAGCTGTGG 248
consensus_3908#1      CTACCTGAACGTGTACCAGCAGTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGA 356
                       *    ** *        ******  * **  **    ****  ****     **   * 

consensus_3908#0      ATTT-----TGGGTGCGCTG----GATCATACCTGGGGCTGCTTACTGCCTGCTGTGGTG 195
consensus_3908#2      ATATATCACTGGCGTTGCTGCTTGGACCATACC-GGAGCTGCTTACTGCCTGCTG-GGTG 306
consensus_3908#1      ACACTTCATCCACGTGAAGGCAATGCGCAAGGTGCGGGAGGTGCGCCAGCAGCTCAAGGA 416
                      *                  *    *  **      * *  *    *   * ***   *  

consensus_3908#0      CTGC--CAGATGGC--CTGAGTTTCCTGCTCGATCCACCCCAGTGCCAGATGCTGATCGT 251
consensus_3908#2      CTGC--CAGATGGC--C-GAGTTTCC-GNTCGATCCACCC-AGTGCCAGATGC------- 352
consensus_3908#1      CATCTACAGCCAGCAGCAGCGGCTAACGCTGAAATCGTGC-GGCACCGACTGGGACGTGG 475
                      *  *  ***   **  * * *  *   * *  *  *   *  *  **   **        

consensus_3908#0      GGCCAACTGAGATGGGATGTAGTTGAGTGAGATTTTAATCATTTGTATCGATGCTTTCCG 311
consensus_3908#2      ------------------------------------------------------------
consensus_3908#1      TGCGCAAGTGCATCT--------------------------------------------- 490
                                                                                  

consensus_3908#0      TGCCCTCGATCTTCTACCTGTCCCAAGGGACGGGAGGAGGAAGCGGACAGTGTGCTGGGA 371
consensus_3908#2      ------------------------------------------------------------
consensus_3908#1      ------------------------------------------------------------
                                                                                  

consensus_3908#0      AAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTACCAGCAGTTGGA 431
consensus_3908#2      ------------------------------------------------------------
consensus_3908#1      ------------------------------------------------------------
                                                                                  

consensus_3908#0      AGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGTGNAAGGCAATG 491
consensus_3908#2      ------------------------------------------------------------
consensus_3908#1      ------------------------------------------------------------
                                                                                  

consensus_3908#0      CGCAAGGTGCGGGCAGCGTGCGCCAGCAGCTCANTGACATCTACAGGCCCACGCNAGCAC 551
consensus_3908#2      ------------------------------------------------------------
consensus_3908#1      ------------------------------------------------------------
                                                                                  

consensus_3908#0      GCCCGGCCTAACCCGCCTTGACACCTCCGCTGCCGCGCCACCGCACTTGNCGCACCNCTG 611
consensus_3908#2      ------------------------------------------------------------
consensus_3908#1      ------------------------------------------------------------
                                                                                  

consensus_3908#0      GCTGCNCCCACGTTGCCCTCTGCTCGCGCGCTACTTTCTACCCNGCCCGCGCCCCCCGGC 671
consensus_3908#2      ------------------------------------------------------------
consensus_3908#1      ------------------------------------------------------------
                                                                                  

consensus_3908#0      TTGCCGCGGNCCTCGCCCC 690
consensus_3908#2      -------------------
consensus_3908#1      -------------------