cluster # 3909

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Anopheles gambiae
cluster # 3909 cluster # 3909 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3909#0 length = 576 sequences # 1

consensus_3909#1 length = 520 sequences # 1
consensus_3909#2 length = 306 sequences # 1

consensusID : consensus_3909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [CCGCTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTCTACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAATAGTCCGCGGGCGTCCGCGCGGCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCTGTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCCGTGTTTGTGTACGTGTGTGTCTGTGTGAGTTTATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTGCAGTGCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAACACAAAATAAAGCGTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGGCGGCTATTTATTTATTCTACCCTTTAAATGTGTT]

[+] EMBL BM600850             [CCGCTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTCTACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAATAGTCCGCGGGCGTCCGCGCGGCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCTGTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCCGTGTTTGTGTACGTGTGTGTCTGTGTGAGTTTATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTGCAGTGCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAACACAAAATAAAGCGTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGGCGGCTATTTATTTATTCTACCCTTTAAATGTGTT]




>consensus_3909#0
CCGCTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACA
TTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTCTACTGTTT
TCTCCCTCGCCTCGGGTTTATTCCAGCAAATAGTCCGCGGGCGTCCGCGCGGCCCTTTTT
CGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCTGTGTTTTTG
CGTGTGTGTGTGTGTGTGTGTGTGTGCCGTGTTTGTGTACGTGTGTGTCTGTGTGAGTTT
ATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTGCAGT
GCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAACACAAAATAAAGC
GTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAA
GTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGT
GGCGGCTATTTATTTATTCTACCCTTTAAATGTGTT

consensusID : consensus_3909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [GTTGGCTGCACTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTGTGTCTGTGTGAGTTTATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTGCAGTGCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAACACAAAATAAAGCGTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGGCGGCTATTTATTTATTCTACCCTTTAAATGTGTTGCTAACGCGTGTGAAAGGCTGCTCGCGGTGGGGGACGACCGGCACTAGTCGATTGGTGTAATAGTAGAAAATATAAAACAAAGAAGAAGACAACATTACACCAACATATTCAACAAACTCACAAGAAAAAAGCAAACTGA]

[+] EMBL BM633128             [GTTGGCTGCACTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTGTGTCTGTGTGAGTTTATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTGCAGTGCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAACACAAAATAAAGCGTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGGCGGCTATTTATTTATTCTACCCTTTAAATGTGTTGCTAACGCGTGTGAAAGGCTGCTCGCGGTGGGGGACGACCGGCACTAGTCGATTGGTGTAATAGTAGAAAATATAAAACAAAGAAGAAGACAACATTACACCAACATATTCAACAAACTCACAAGAAAAAAGCAAACTGA]




>consensus_3909#1
GTTGGCTGCACTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCC
TCCGACATTTGCAAACCCTCGTACAGGTGTGTCTGTGTGAGTTTATTTATATGTTACTTG
TGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTGCAGTGCAAAACGATGAAGTG
AAATAAAGTTGTTGAATATTTAAAAAATAAACACAAAATAAAGCGTACAAAACTACATTT
TTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGTCCTCGTAGCTTTAC
GGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGGCGGCTATTTATTTA
TTCTACCCTTTAAATGTGTTGCTAACGCGTGTGAAAGGCTGCTCGCGGTGGGGGACGACC
GGCACTAGTCGATTGGTGTAATAGTAGAAAATATAAAACAAAGAAGAAGACAACATTACA
CCAACATATTCAACAAACTCACAAGAAAAAAGCAAACTGA

consensusID : consensus_3909#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [CCGCGGACGCGTGGGTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTCTACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAATAGTCCGCGGGCGTCCGCGCGGCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCTGTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCCGTGTTTGTGTACGTGTGTGTCTGTGTGAGTTTATT]

[+] EMBL BM620947             [CCGCGGACGCGTGGGTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTCTACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAATAGTCCGCGGGCGTCCGCGCGGCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCTGTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCCGTGTTTGTGTACGTGTGTGTCTGTGTGAGTTTATT]




>consensus_3909#2
CCGCGGACGCGTGGGTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGCCTCCG
ACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTCTACTG
TTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAATAGTCCGCGGGCGTCCGCGCGGCCCTT
TTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCTGTGTTT
TTGCGTGTGTGTGTGTGTGTGTGTGTGTGCCGTGTTTGTGTACGTGTGTGTCTGTGTGAG
TTTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3909#0      --------CCGCTCCGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGC 52
consensus_3909#2      -----CCGCGGACGCGTGGGTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGC 55
consensus_3909#1      GTTGGCTGCACTC-CGGCATTGCTGTACGAAGCATCGGCGAGCGAGCGAGCGCGCGCGGC 59
                              *     **    ****************************************

consensus_3909#0      CTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTC 112
consensus_3909#2      CTCCGACATTTGCAAACCCTCGTACAGGTTGCGCCTTTTGTTTAGCGGGGGCGTTTGTTC 115
consensus_3909#1      CTCCGACATTTGCAAACCCTCGTACAGGT-GTGTCTGT----------GTGAGTTTATTT 108
                      ***************************** * * ** *          * * **** ** 

consensus_3909#0      TACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAAT-AGTCCGCGGGCGTCCGCGCG 171
consensus_3909#2      TACTGTTTTCTCCCTCGCCTCGGGTTTATTCCAGCAAAT-AGTCCGCGGGCGTCCGCGCG 174
consensus_3909#1      ATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTATGCGCGTG-CAGTGCA 167
                         ****   *   *      *  * * **   *****  ***  *** * * * * ** 

consensus_3909#0      GCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCT 231
consensus_3909#2      GCCCTTTTTCGTGAATCGTGACGTGCGTGTGTGCATTAGTTTCGGCGCGCGCGAGCGCCT 234
consensus_3909#1      AAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATA-AACACAAAATAAAGCGT 226
                         *  *   *****           *  * *  *  *  *    * *     *  ** *

consensus_3909#0      GTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCC---GTGTTTGTGTACGTGTGTGT 288
consensus_3909#2      GTGTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGCC---GTGTTTGTGTACGTGTGTGT 291
consensus_3909#1      ACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATATTATAAAAAAAAAGT 286
                             * * * * *** * ***     *      *   *  * *    *       **

consensus_3909#0      CTGTGTGAGTTTATTTATATGTTACTTGTGTGAGTGTGTATGTGTTTGTGCAAAAGAGTA 348
consensus_3909#2      CTGTGTGAGTTTATT--------------------------------------------- 306
consensus_3909#1      CCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACCTCCTTTCTAAGTGG 346
                      *   **   ****                                               

consensus_3909#0      TGCGCGTGCAGTGCAAAACGATGAAGTGAAATAAAGTTGTTGAATATTTAAAAAATAAAC 408
consensus_3909#2      ------------------------------------------------------------
consensus_3909#1      CGGCTATTTATTTATTCTACCCTTTAAATGTGTTGCTAACGCGTGTGAAAGGCTGCTCGC 406
                                                                                  

consensus_3909#0      ACAAAATAAAGCGTACAAAACTACATTTTTGTATTTGTCGACTTTCTCCTCAAAGCATAT 468
consensus_3909#2      ------------------------------------------------------------
consensus_3909#1      GGTGGGGGACGACCGGCACTAGTCGATTGGTGTAATAGTAGAAAATATAAAACAAAGAAG 466
                                                                                  

consensus_3909#0      TATAAAAAAAAAGTCCTCGTAGCTTTACGGCAAACGTGAAGGAGTAGCATTTTCCGCACC 528
consensus_3909#2      ------------------------------------------------------------
consensus_3909#1      AAGACAACATTACACCAACATATTCAACAAACTCACAAGAAAAAAGCAAACTGA------ 520
                                                                                  

consensus_3909#0      TCCTTTCTAAGTGGCGGCTATTTATTTATTCTACCCTTTAAATGTGTT 576
consensus_3909#2      ------------------------------------------------
consensus_3909#1      ------------------------------------------------