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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[CCGCCCACGCGTCCGCGACAGGCTGCAATGAAATGACGAAATAATTGCTCCAACCATAATCTCACTTTCACACACACATACACACATTCACAAACACGTACACATGCGTACAGATGGACACGCACACTAGATGTACGGATTGAACAACGCTTTACGCGGGTTCGCCAACTTGACCGCGTGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGATGGCAAGCAAAGCTGACTGTAGACTGGCCCGCTCGATTGGCGCATACTGTTAGAAACCATCCTCTCCCTACCCTTTCCCTGGTTAATCCTCCCCGGAAAGCCCCGGCCGAGCGGTGTTTTGATGCGAAAGGCAGGCCAAAGTTATCTGTGTGACGTTGCAAAACAAAAATCACGCTGCCCAAGCAATTGATCGCCATATTTCAGCCCCCGTCTCTGCTTGCACGGAAACGGACTCGTGAGCACACGTGTGTATGTGTGTATGCGCGTGAGTGAGCGAGAGAGAGAGAGAACGACGACTGTGCATTTAACGGTAACCCGTCGCGCGTCCTGTGTGTGTGAGTGCGGTCGATAAACAGTGGGCTGGAAGTGCGTGTGTGTGCGTGTGCGTATCGCGGTCAACACTCACACACGGTGTCAAAACGGCTTCGC]
[+] EMBL BM614778 [CCGCCCACGCGTCCGCGACAGGCTGCAATGAAATGACGAAATAATTGCTCCAACCATAATCTCACTTTCACACACACATACACACATTCACAAACACGTACACATGCGTACAGATGGACACGCACACTAGATGTACGGATTGAACAACGCTTTACGCGGGTTCGCCAACTTGACCGCGTGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGATGGCAAGCAAAGCTGACTGTAGACTGGCCCGCTCGATTGGCGCATACTGTTAGAAACCATCCTCTCCCTACCCTTTCCCTGGTTAATCCTCCCCGGAAAGCCCCGGCCGAGCGGTGTTTTGATGCGAAAGGCAGGCCAAAGTTATCTGTGTGACGTTGCAAAACAAAAATCACGCTGCCCAAGCAATTGATCGCCATATTTCAGCCCCCGTCTCTGCTTGCACGGAAACGGACTCGTGAGCACACGTGTGTATGTGTGTATGCGCGTGAGTGAGCGAGAGAGAGAGAGAACGACGACTGTGCATTTAACGGTAACCCGTCGCGCGTCCTGTGTGTGTGAGTGCGGTCGATAAACAGTGGGCTGGAAGTGCGTGTGTGTGCGTGTGCGTATCGCGGTCAACACTCACACACGGTGTCAAAACGGCTTCGC]
consensusID : consensus_3910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[CAGGCGGCACTGGGACGATCCAACCCGCATGCTATACTGACCTTGGTTGTGAGGTCGGCCATTACGGAGTGAAAAACATATTTGTGGAGTGCATTTTTCTACACCAAAATAATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCACTGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCACGTGCACGACACGATTTTCACAACCGGAGGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCCCCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCAGAGCGCAAAGCAAAACCGACACGACGTAAGAAGGGCCAGCACCCCGACTATCTGGACCTCGTGTTGTCTCGTCCTCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCCGCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGACATGCGTACAGATGGACACGCACACTAGATGTACGGATTGAACAACGCTTTACGCGGGTTCGCCAACTTGACCGCGTGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGACGG]
[-] EMBL BM611936 [CAGGCGGCACTGGGACGATCCAACCCGCATGCTATACTGACCTTGGTTGTGAGGTCGGCCATTACGGAGTGAAAAACATATTTGTGGAGTGCATTTTTCTACACCAAAATAATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCACTGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCACGTGCACGACACGATTTTCACAACCGGAGGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCCCCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCAGAGCGCAAAGCAAAACCGACACGACGTAAGAAGGGCCAGCACCCCGACTATCTGGACCTCGTGTTGTCTCGTCCTCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCCGCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGACATGCGTACAGATGGACACGCACACTAGATGTACGGATTGAACAACGCTTTACGCGGGTTCGCCAACTTGACCGCGTGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGACGG]
consensusID : consensus_3910#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[CCGCCCACGCGTCCGCGGAGTGAAAAACATATTTGTGGAGTGCATTTTTCTACACCAAAATAATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCACTGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCACGTGCACGACACGATTTTCACAACCGGAGGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCCCCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCAGAGCGCAAAGCAAAACCGACACGACGTAAGAAGGGCCAGCACCCCGACTATCTGGACCTCGTGTTGTCTCGTCCTCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCCGCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGCTGCAATGAAATGACGAAATAATTGCTCCAACCATAATCTCACTTTCACACACACATACACACATTCACAAACACGTACACATGACGTACAGATGGACACGCA]
[+] EMBL BM582814 [CCGCCCACGCGTCCGCGGAGTGAAAAACATATTTGTGGAGTGCATTTTTCTACACCAAAATAATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCACTGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCACGTGCACGACACGATTTTCACAACCGGAGGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCCCCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCAGAGCGCAAAGCAAAACCGACACGACGTAAGAAGGGCCAGCACCCCGACTATCTGGACCTCGTGTTGTCTCGTCCTCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCCGCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGCTGCAATGAAATGACGAAATAATTGCTCCAACCATAATCTCACTTTCACACACACATACACACATTCACAAACACGTACACATGACGTACAGATGGACACGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3910#1 -----CAGGCGGCACTGGGACGATCCAACCCGC--ATGCTATACTGACCTTGGTTGTGAG 53
consensus_3910#2 --------------------------------------------------------CCGC 4
consensus_3910#0 CCGCCCACGCGTCCGCGACAGGCTGCAATGAAATGACGAAATAATTGCTCCAACCATAAT 60
consensus_3910#1 GTCGGCCATTACGGAGTGAAAAACATATTTGTGGA---GTGCATTTTTCTACACCAAAAT 110
consensus_3910#2 CCACGCGTCCGCGGAGTGAAAAACATATTTGTGGA---GTGCATTTTTCTACACCAAAAT 61
consensus_3910#0 CTC-ACTTTCACACACACATACACACATTCACAAACACGTACACATGCGTACAGATGGAC 119
* * * * * *** *** * ** ** * **** *
consensus_3910#1 AATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCAC 170
consensus_3910#2 AATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCAC 121
consensus_3910#0 ACGCACACTAGATGTACGGATTGAACAACGCTTTACGCGGGTTCGCCAACTTGACCGCG- 178
* ** * ** * * *** * * * *** * ** ***
consensus_3910#1 TGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCA-CGTGCACGACA 229
consensus_3910#2 TGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCA-CGTGCACGACA 180
consensus_3910#0 TGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGATGGCAAGCAAAGCT 238
** * *** * * ** * * * ** * ** **** * *** *
consensus_3910#1 CGATTTTCAC-AACCGGA--GGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCC 286
consensus_3910#2 CGATTTTCAC-AACCGGA--GGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCC 237
consensus_3910#0 GACTGTAGACTGGCCCGCTCGATTGGCGCATACTGTTAGAAACCATCCTCTCCCTACCCT 298
* * ** ** * * * ** *** * * * * **
consensus_3910#1 CCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCA 346
consensus_3910#2 CCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCA 297
consensus_3910#0 TTCCCTGGTTAATCCTCCCCGGAAAGCCC-CGGCCGAGCGGTGTTTTGATGCGAAAGGCA 357
* * * * * * ** *** *** ** * ****
consensus_3910#1 GAGCGCAAA-GCAAAACCGACACGACGTAAGAAGGGCCA-GCACCCCGACTATCTGGACC 404
consensus_3910#2 GAGCGCAAA-GCAAAACCGACACGACGTAAGAAGGGCCA-GCACCCCGACTATCTGGACC 355
consensus_3910#0 GGCCAAAGTTATCTGTGTGACGTTGCAAAACAAAAATCACGCTGCCCAAGCAATTGATCG 417
* * * *** * ** ** ** ** *** * * ** *
consensus_3910#1 TCGTGTTGTCTCGTCC--TCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCC 462
consensus_3910#2 TCGTGTTGTCTCGTCC--TCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCC 413
consensus_3910#0 CCATATTTCAGCCCCCGTCTCTGCTTGCACGGAAACGGACTCGTGAGCACACGTGTGTAT 477
* * ** * ** * * ** * ** * * ** * * *****
consensus_3910#1 GCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGACAT--GCG 520
consensus_3910#2 GCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGCTGC--AAT 471
consensus_3910#0 G---TGTGTATGCGCGTGA-GTGAGCGAGAGAGAGAGAGAACGACGACTGTGCATTTAAC 533
* ** ** ** ** ** *** * * * ****** *
consensus_3910#1 TACAGATGGACACGCACACTAGATGTACGGAT-TGAACAACGCTTTACG---CGGGTTCG 576
consensus_3910#2 GAAATGACGAAATAATTGCTCCAACCATAATC-TCACTTTCACAC-ACA---CATACACA 526
consensus_3910#0 GGTAACCCGTCGCGCGTCCTGTGTGTGTGAGTGCGGTCGATAAACAGTGGGCTGGAAGTG 593
* * **
consensus_3910#1 CCAACTTGACCGCGTGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGA 636
consensus_3910#2 CATTCACAAACACGTACAC-ATGACG-TACAGATGGACACGCA----------------- 567
consensus_3910#0 CGTGTGTGTGCGTGTGCGT-ATCGCGGTCAACACTCACACACGGTGTCAAAACGGCTTCG 652
* * ** * ** * *
consensus_3910#1 CGG 639
consensus_3910#2 ---
consensus_3910#0 C-- 653
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||