cluster # 3918

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Anopheles gambiae
cluster # 3918 cluster # 3918 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3918#0 length = 854 sequences # 2

consensus_3918#1 length = 681 sequences # 1

consensusID : consensus_3918#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 854
fasta sequence

                              [AGGCCAAGAACTTCGGCACGTAGGAGCAAGTGAAAACACGGACGACACCGGACCGGAGAGTAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCAT-CCAGCTACATCACGAAGAACATGGCT-CATACGCGCTGTGCCGGGATTGTGTCGA-AAAATTAAAACAAT-CCGTCGCCTTTCGAGACAACTGCCTAG-CCAATAGTGCGCTA-TTCGAGCAGCTGTACAGTAGTAGCNNTTCATATTACGGGCAGGAGGAAGAACCTCCCGAGAAACACTGGCAAACAGCAAGCATCGAGCGGTANAGGTAGAACCACATTAGAANATTGANAATAGATGTGCGAAAAGCCAACGAAACTTAAACCGAGGCATGNGGCCGGAATGGCAGTACCAGGTGTCGAACGAGTTATTACCACANCGATTCGCACACCTCGGCTGACTGGGCTATATGTACGGGACCNNTATGTNATCGCACCAGCGACCAACATACAAGNTACGGAAGGNCGAACGAGGATAACGATANCTGACGCAAGCCTAACCCTTCACACCCTANTACCTTGGGCACAAAAAACCCAAAATATGGACNACACGCGAGGCCCCGAAACACACATTTGCACAATACGGACACAACAGGCGGACCGACACACCGTTGGGCACTTANGGCCTGCGAAACGGTGAAAACCAGACCCGGGCAGTCNCCCCCCGGAGGGCCAACCAAGAACNACCCCGGGGCCAANAGNNCANGGTCGTTGCCCAGNACGNTTGNTCGGCAAAAGGCGC]

[+] EMBL BX468550             [AGGCCAAGAACTTCGGCACGTAGGAGCAAGTGAAAACACGGACGACACCGGACCGGAGAGTAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCAT CCAGCTACATCACGAAGAACATGGCT CATACGCGCTGTGCCGGGATTGTGTCGA AAAATTAAAACAAT CCGTCGCCTTTCGAGACAACTGCCTAG CCAATAGTGCGCTA TTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AL695941             [                                                              caggattatCCATTTGTCGGTTTTGTCTGTGCGATAAGGAAATCCG CTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATACCAGCTACA CACGAAGAACATGGCTACATACGCGCTGTGCCGGGATTGTGCCGANACAATTAAAACAATACCGTCG CTTTCGAGACAACTGGCTAGACCAATAGTGCGCTATTTCGAGCAGCTGTACAGTAGTAGCNNTTCATATTACGGGCAGGAGGAAGAACCTCCCGAGAAACACTGGCAAACAGCAAGCATCGAGCGGTANAGGTAGAACCACATTAGAANATTGANAATAGATGTGCGAAAAGCCAACGAAACTTAAACCGAGGCATGNGGCCGGAATGGCAGTACCAGGTGTCGAACGAGTTATTACCACANCGATTCGCACACCTCGGCTGACTGGGCTATATGTACGGGACCNNTATGTNATCGCACCAGCGACCAACATACAAGNTACGGAAGGNCGAACGAGGATAACGATANCTGACGCAAGCCTAACCCTTCACACCCTANTACCTTGGGCACAAAAAACCCAAAATATGGACNACACGCGAGGCCCCGAAACACACATTTGCACAATACGGACACAACAGGCGGACCGACACACCGTTGGGCACTTANGGCCTGCGAAACGGTGAAAACCAGACCCGGGCAGTCNCCCCCCGGAGGGCCAACCAAGAACNACCCCGGGGCCAANAGNNCANGGTCGTTGCCCAGNACGNTTGNTCGGCAAAAGGCGC]




>consensus_3918#0
AGGCCAAGAACTTCGGCACGTAGGAGCAAGTGAAAACACGGACGACACCGGACCGGAGAG
TAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAAT
CGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATCCA
GCTACATCACGAAGAACATGGCTCATACGCGCTGTGCCGGGATTGTGTCGAAAAATTAAA
ACAATCCGTCGCCTTTCGAGACAACTGCCTAGCCAATAGTGCGCTATTCGAGCAGCTGTA
CAGTAGTAGCNNTTCATATTACGGGCAGGAGGAAGAACCTCCCGAGAAACACTGGCAAAC
AGCAAGCATCGAGCGGTANAGGTAGAACCACATTAGAANATTGANAATAGATGTGCGAAA
AGCCAACGAAACTTAAACCGAGGCATGNGGCCGGAATGGCAGTACCAGGTGTCGAACGAG
TTATTACCACANCGATTCGCACACCTCGGCTGACTGGGCTATATGTACGGGACCNNTATG
TNATCGCACCAGCGACCAACATACAAGNTACGGAAGGNCGAACGAGGATAACGATANCTG
ACGCAAGCCTAACCCTTCACACCCTANTACCTTGGGCACAAAAAACCCAAAATATGGACN
ACACGCGAGGCCCCGAAACACACATTTGCACAATACGGACACAACAGGCGGACCGACACA
CCGTTGGGCACTTANGGCCTGCGAAACGGTGAAAACCAGACCCGGGCAGTCNCCCCCCGG
AGGGCCAACCAAGAACNACCCCGGGGCCAANAGNNCANGGTCGTTGCCCAGNACGNTTGN
TCGGCAAAAGGCGC

consensusID : consensus_3918#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [CCGCCGGACCGGAGAGTAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATCCAGCTACACCACGAAGAACATGGCTCATACGCGCTGTGCCGGGATTGTGCCGAAAAATTAAAACAATCCGTCGTCTTTCGAGACAACTGCCTAGCCAATAGTGCGCTTTTCGAGCAGCTGTACAGTAGTAGCATTATATACGGGCAGGAGGAAGAACCTCCCGACGAAACACTGCCAATAGCAGCATCGAGCGCAAAGGTAGAACAATTAGAAATTGAAATAGTGTGTGATAAGCAAACGAAATTAACCGAGGATGGGCCGGAATGGCAGTACAGTGTCGAAGAGTTTTCACACGATTCACCCCACTCGGCTGATGGCTATTGTTCGGAAAATTATATCGCACAGCACGAAATTAAGCCGGAGGCCGAACGAAATAGCGATACTGACGCAAGCCTAACCCTTCCACCTAGTACTGGCAAACCATTGAAACGGCCGAAATTGAAACGAAAAGCGACGGAACGTGGATGGCGGAAGCAACGCCGCTCCCGCGCACAGAAACCGGCCAAAGCAGCTCTGGCCCGACGTGTGGCAAGCTGGTAAACAATCT]

[+] EMBL BM655200             [CCGCCGGACCGGAGAGTAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATCCAGCTACACCACGAAGAACATGGCTCATACGCGCTGTGCCGGGATTGTGCCGAAAAATTAAAACAATCCGTCGTCTTTCGAGACAACTGCCTAGCCAATAGTGCGCTTTTCGAGCAGCTGTACAGTAGTAGCATTATATACGGGCAGGAGGAAGAACCTCCCGACGAAACACTGCCAATAGCAGCATCGAGCGCAAAGGTAGAACAATTAGAAATTGAAATAGTGTGTGATAAGCAAACGAAATTAACCGAGGATGGGCCGGAATGGCAGTACAGTGTCGAAGAGTTTTCACACGATTCACCCCACTCGGCTGATGGCTATTGTTCGGAAAATTATATCGCACAGCACGAAATTAAGCCGGAGGCCGAACGAAATAGCGATACTGACGCAAGCCTAACCCTTCCACCTAGTACTGGCAAACCATTGAAACGGCCGAAATTGAAACGAAAAGCGACGGAACGTGGATGGCGGAAGCAACGCCGCTCCCGCGCACAGAAACCGGCCAAAGCAGCTCTGGCCCGACGTGTGGCAAGCTGGTAAACAATCT]




>consensus_3918#1
CCGCCGGACCGGAGAGTAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAA
CCCGCCTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAAC
GCTTTACAGGCATCCAGCTACACCACGAAGAACATGGCTCATACGCGCTGTGCCGGGATT
GTGCCGAAAAATTAAAACAATCCGTCGTCTTTCGAGACAACTGCCTAGCCAATAGTGCGC
TTTTCGAGCAGCTGTACAGTAGTAGCATTATATACGGGCAGGAGGAAGAACCTCCCGACG
AAACACTGCCAATAGCAGCATCGAGCGCAAAGGTAGAACAATTAGAAATTGAAATAGTGT
GTGATAAGCAAACGAAATTAACCGAGGATGGGCCGGAATGGCAGTACAGTGTCGAAGAGT
TTTCACACGATTCACCCCACTCGGCTGATGGCTATTGTTCGGAAAATTATATCGCACAGC
ACGAAATTAAGCCGGAGGCCGAACGAAATAGCGATACTGACGCAAGCCTAACCCTTCCAC
CTAGTACTGGCAAACCATTGAAACGGCCGAAATTGAAACGAAAAGCGACGGAACGTGGAT
GGCGGAAGCAACGCCGCTCCCGCGCACAGAAACCGGCCAAAGCAGCTCTGGCCCGACGTG
TGGCAAGCTGGTAAACAATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3918#0      AGGCCAAGAACTTCGGCACGTAGGAGCAAGTGAAAACACGGACGACACCGGACCGGAGAG 60
consensus_3918#1      --------------------------------------------CCGCCGGACCGGAGAG 16
                                                                   * *************

consensus_3918#0      TAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAAT 120
consensus_3918#1      TAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAAT 76
                      ************************************************************

consensus_3918#0      CGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATCCA 180
consensus_3918#1      CGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATCCA 136
                      ************************************************************

consensus_3918#0      GCTACATCACGAAGAACATGGCTCATACGCGCTGTGCCGGGATTGTGTCGAAAAATTAAA 240
consensus_3918#1      GCTACACCACGAAGAACATGGCTCATACGCGCTGTGCCGGGATTGTGCCGAAAAATTAAA 196
                      ****** **************************************** ************

consensus_3918#0      ACAATCCGTCGCCTTTCGAGACAACTGCCTAGCCAATAGTGCGCTATTCGAGCAGCTGTA 300
consensus_3918#1      ACAATCCGTCGTCTTTCGAGACAACTGCCTAGCCAATAGTGCGCTTTTCGAGCAGCTGTA 256
                      *********** ********************************* **************

consensus_3918#0      CAGTAGTAGCNNTTCATATTACGGGCAGGAGGAAGAACCTCCCGA-GAAACACTGGCAAA 359
consensus_3918#1      CAGTAGTAGCATTATAT---ACGGGCAGGAGGAAGAACCTCCCGACGAAACACTG-CCAA 312
                      **********  *  **   ************************* ********* * **

consensus_3918#0      CAGCAAGCATCGAGCGGTANAGGTAGAACCACATTAGAANATTGANAATAGATGTGCGAA 419
consensus_3918#1      TAGCA-GCATCGAGCG-CAAAGGTAGAACA--ATTAGAAATT--GAAATAG-TGTGTGAT 365
                       **** **********  * *********   *******  *    ***** **** ** 

consensus_3918#0      AAGCCAACGAAACTTAAACCGAGGCATGNGGCCGGAATGGCAGTACCAGGTGTCGAACGA 479
consensus_3918#1      AAGCAAACGAAATT--AACCGAGG-ATGGG-CCGGAATGGCAGTAC--AGTGTCGAA-GA 418
                      **** ******* *  ******** *** * ***************   ******** **

consensus_3918#0      GTTATTACCACANCGATTCGCACACCTCGGCTGACTGGGCTATATGTACGGGACCNNTAT 539
consensus_3918#1      GTTTTCAC----ACGATTCACCCCACTCGGCTGAT--GGCTAT-TGTTCGG----AAAAT 467
                      *** * **     ****** * *  *********   ****** *** ***       **

consensus_3918#0      GTNATCGCACCAGCGACCAACATACAAGNTACGGAAGGNCGAACGAGGATAACGATANCT 599
consensus_3918#1      TATATCGCAC-AGCA--CGAAAT-TAAGCC---GGAGGCCGAACGAA-ATAGCGATAC-T 518
                         ******* ***   * * **  ***     * *** *******  *** *****  *

consensus_3918#0      GACGCAAGCCTAACCCTTC-ACACCCTANTACCTTGGGCACAAAAAACCCAAAATATGGA 658
consensus_3918#1      GACGCAAGCCTAACCCTTCCACCTAGTACTGGCAAACCATTGAAACGGCCGAAATTGAAA 578
                      ******************* **    ** *  *         ***   ** ****    *

consensus_3918#0      CNACACGCGAGGCCCCGAAACACACATTTGCACAATACGGACACAACAGGCGGACCGACA 718
consensus_3918#1      CGAAAAGCGA-----CGGAACGTGGATGGCGGAAGCAACGCCGCTCCCG-CGCACAGAAA 632
                      * * * ****     ** ***    **      *  *  * * *  * * ** ** ** *

consensus_3918#0      CACCGTTGGGCACTTANGGCCTGCGAAACGGTGAAAACCAGACCCGGGCAGTCNCCCCCC 778
consensus_3918#1      CCGGCCAAAGCAGCTCTGGCC--CGACGTGTGGCAAGCTGG---TAAACAATCT------ 681
                      *        ***  *  ****  ***   *  * ** *  *       ** **       

consensus_3918#0      GGAGGGCCAACCAAGAACNACCCCGGGGCCAANAGNNCANGGTCGTTGCCCAGNACGNTT 838
consensus_3918#1      ------------------------------------------------------------
                                                                                  

consensus_3918#0      GNTCGGCAAAAGGCGC 854
consensus_3918#1      ----------------