cluster # 3921

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Anopheles gambiae
cluster # 3921 cluster # 3921 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3921#0 length = 1077 sequences # 1

consensus_3921#1 length = 637 sequences # 1
consensus_3921#2 length = 446 sequences # 1

consensusID : consensus_3921#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1077
fasta sequence

                              [AGATNGCCCCAGGATTAAACTCCCNATGANNNGCTANAGTGCCCTTCAAGATTATTCATCTTGCAAGTAGTATATAGGACCTGATCTGGAAGCAGGTATAAAGCAGGTGTACAAACGGGAGCTCAGTNTTGGGCATCGCACGCTTAACATGGCAACTCTANCACACATNGTCTANCAATTACTTGTACTGAGNTGTTGCACCAGCTATGAGGCCAACTCTGCTNCACTGTGGCTCGGTCGACANGNTATCTGAAGAAAAGTGGGATCAGGTGCACCTGGCGGGGNGTGNTGCCCAGACTGGTCTGGCCAGTGAGCTGTNCANTNAGGGTTGNAAGAGAGTTTACTCGGAGCAAACTAACCGTNCGTTAGCACGAGTGATGCGACCCCAGAAATTGCGGGCATCCGGATCCTAGCATTGTGCACGCGCCACAGTGGCACAAGTTNGNTAGAAAGCCTATCTAAANAAACAAAGNCCTGCCTTGNGGGCACTGCAGGTCATTCCCAGGTTCTTCCGCAGNCCAAAGGGTTGCCTNGGACANNGGGATGGNANCNTANNAAGTAGGCCCTAAACGCCGTGNGANACCCAGGGACCACTATGTAGTAGCTGAAANANTCCGGCCGGAAAGCTNGATTNACAGATGGCACGAGTGNGTCCCCTNCAAANAAGGGGGGAAGCTGCTTGGCTACCNGGCAAGAAGTTCTTAACCCCCACGTNACATGTNAACGGGCCTGGGAATTGCAGCCCNTGGACAGTCNCTCGGCGNACACNACGACTGGTNTACGACACNGACNACATACNCTTGGAACNAAACNCACAATGGCCCAAGCGGTNNAACANACAGGCACAACCGGCATCACTGTAGGCCANTCTNGAANACNCGGAGACGTNTGGAAGTGAACGGAACNGGCGGCCCGAAGCACCGCCACCACTNTGCGGGGGGAANAACACAGGTAAGTACCCNAAACATATACCCCAGCCGNNAACAGCCAGGGATTGTTCCCCACGCGCGCATNGTCNACCACTACCGACAACTTATGGTANTGTAAACACAGCAGTACACAGAAGCGCCTCACNAG]

[+] EMBL AL696012             [AGATNGCCCCAGGATTAAACTCCCNATGANNNGCTANAGTGCCCTTCAAGATTATTCATCTTGCAAGTAGTATATAGGACCTGATCTGGAAGCAGGTATAAAGCAGGTGTACAAACGGGAGCTCAGTNTTGGGCATCGCACGCTTAACATGGCAACTCTANCACACATNGTCTANCAATTACTTGTACTGAGNTGTTGCACCAGCTATGAGGCCAACTCTGCTNCACTGTGGCTCGGTCGACANGNTATCTGAAGAAAAGTGGGATCAGGTGCACCTGGCGGGGNGTGNTGCCCAGACTGGTCTGGCCAGTGAGCTGTNCANTNAGGGTTGNAAGAGAGTTTACTCGGAGCAAACTAACCGTNCGTTAGCACGAGTGATGCGACCCCAGAAATTGCGGGCATCCGGATCCTAGCATTGTGCACGCGCCACAGTGGCACAAGTTNGNTAGAAAGCCTATCTAAANAAACAAAGNCCTGCCTTGNGGGCACTGCAGGTCATTCCCAGGTTCTTCCGCAGNCCAAAGGGTTGCCTNGGACANNGGGATGGNANCNTANNAAGTAGGCCCTAAACGCCGTGNGANACCCAGGGACCACTATGTAGTAGCTGAAANANTCCGGCCGGAAAGCTNGATTNACAGATGGCACGAGTGNGTCCCCTNCAAANAAGGGGGGAAGCTGCTTGGCTACCNGGCAAGAAGTTCTTAACCCCCACGTNACATGTNAACGGGCCTGGGAATTGCAGCCCNTGGACAGTCNCTCGGCGNACACNACGACTGGTNTACGACACNGACNACATACNCTTGGAACNAAACNCACAATGGCCCAAGCGGTNNAACANACAGGCACAACCGGCATCACTGTAGGCCANTCTNGAANACNCGGAGACGTNTGGAAGTGAACGGAACNGGCGGCCCGAAGCACCGCCACCACTNTGCGGGGGGAANAACACAGGTAAGTACCCNAAACATATACCCCAGCCGNNAACAGCCAGGGATTGTTCCCCACGCGCGCATNGTCNACCACTACCGACAACTTATGGTANTGTAAACACAGCAGTACACAGAAGCGCCTCACNAG]




>consensus_3921#0
AGATNGCCCCAGGATTAAACTCCCNATGANNNGCTANAGTGCCCTTCAAGATTATTCATC
TTGCAAGTAGTATATAGGACCTGATCTGGAAGCAGGTATAAAGCAGGTGTACAAACGGGA
GCTCAGTNTTGGGCATCGCACGCTTAACATGGCAACTCTANCACACATNGTCTANCAATT
ACTTGTACTGAGNTGTTGCACCAGCTATGAGGCCAACTCTGCTNCACTGTGGCTCGGTCG
ACANGNTATCTGAAGAAAAGTGGGATCAGGTGCACCTGGCGGGGNGTGNTGCCCAGACTG
GTCTGGCCAGTGAGCTGTNCANTNAGGGTTGNAAGAGAGTTTACTCGGAGCAAACTAACC
GTNCGTTAGCACGAGTGATGCGACCCCAGAAATTGCGGGCATCCGGATCCTAGCATTGTG
CACGCGCCACAGTGGCACAAGTTNGNTAGAAAGCCTATCTAAANAAACAAAGNCCTGCCT
TGNGGGCACTGCAGGTCATTCCCAGGTTCTTCCGCAGNCCAAAGGGTTGCCTNGGACANN
GGGATGGNANCNTANNAAGTAGGCCCTAAACGCCGTGNGANACCCAGGGACCACTATGTA
GTAGCTGAAANANTCCGGCCGGAAAGCTNGATTNACAGATGGCACGAGTGNGTCCCCTNC
AAANAAGGGGGGAAGCTGCTTGGCTACCNGGCAAGAAGTTCTTAACCCCCACGTNACATG
TNAACGGGCCTGGGAATTGCAGCCCNTGGACAGTCNCTCGGCGNACACNACGACTGGTNT
ACGACACNGACNACATACNCTTGGAACNAAACNCACAATGGCCCAAGCGGTNNAACANAC
AGGCACAACCGGCATCACTGTAGGCCANTCTNGAANACNCGGAGACGTNTGGAAGTGAAC
GGAACNGGCGGCCCGAAGCACCGCCACCACTNTGCGGGGGGAANAACACAGGTAAGTACC
CNAAACATATACCCCAGCCGNNAACAGCCAGGGATTGTTCCCCACGCGCGCATNGTCNAC
CACTACCGACAACTTATGGTANTGTAAACACAGCAGTACACAGAAGCGCCTCACNAG

consensusID : consensus_3921#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [CCGCTGAAAGAAAGTCATCTTTCGACCCGAAACGGCTTCTTTCTTTCTCGTTACTGTGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAAACACCAACTGTGGGGCCCCAGTCGCGGTGGCCACATTCAGTCAGCCAAGAGCGTAGCAAATATCAGTCGATAATTACGACGAAACGGAACGCCCTGGGTCTGTGCCTGGCTGGTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGTAATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCCCTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGAATATTAATCTTGAAGAGATATGGACCGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGAGCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACACACATGTCTACAATTACTGTACGAGTGTCCACCAGCAGCCCAACTCGCGCACGGGCTCGTCGAAGATATCGAAAAAAGGCATCAGCGCACCGCCGGGCGGGGCCCAGTTGGTCGGCCAGGAGCTGTACAAACGGGTTGAAGGAGTTTCTC]

[+] EMBL BM594224             [CCGCTGAAAGAAAGTCATCTTTCGACCCGAAACGGCTTCTTTCTTTCTCGTTACTGTGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAAACACCAACTGTGGGGCCCCAGTCGCGGTGGCCACATTCAGTCAGCCAAGAGCGTAGCAAATATCAGTCGATAATTACGACGAAACGGAACGCCCTGGGTCTGTGCCTGGCTGGTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGTAATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCCCTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGAATATTAATCTTGAAGAGATATGGACCGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGAGCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACACACATGTCTACAATTACTGTACGAGTGTCCACCAGCAGCCCAACTCGCGCACGGGCTCGTCGAAGATATCGAAAAAAGGCATCAGCGCACCGCCGGGCGGGGCCCAGTTGGTCGGCCAGGAGCTGTACAAACGGGTTGAAGGAGTTTCTC]




>consensus_3921#1
CCGCTGAAAGAAAGTCATCTTTCGACCCGAAACGGCTTCTTTCTTTCTCGTTACTGTGTT
TAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAAACACCAACTGTGGGG
CCCCAGTCGCGGTGGCCACATTCAGTCAGCCAAGAGCGTAGCAAATATCAGTCGATAATT
ACGACGAAACGGAACGCCCTGGGTCTGTGCCTGGCTGGTTCGTGTAAATAAACCACGTTG
GAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGTAATTGACGAAACCACACAACAGC
ACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCCCTAATCCAATGTCTAAACTAAAC
TCCCATGGGGCTACAGGGCTTAAGAATATTAATCTTGAAGAGATATGGACCGATCTGGAA
GCTGGGATAAAGCAGGTGTACAAACGGGAGCTCAGTTTGGGCATCGCACGCTACATGGAA
CTCTACACACATGTCTACAATTACTGTACGAGTGTCCACCAGCAGCCCAACTCGCGCACG
GGCTCGTCGAAGATATCGAAAAAAGGCATCAGCGCACCGCCGGGCGGGGCCCAGTTGGTC
GGCCAGGAGCTGTACAAACGGGTTGAAGGAGTTTCTC

consensusID : consensus_3921#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [CGACCCACGCGTCCGGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAAACACCAACTGTGGGGCCCCAGTCGCGGTGGCCACATTCAGTCAGCCAAGAGCGTAGCAAATATCAGTCGATAATTACGACGAAACGGAACGCCCTGGGTCTGTGCCTGGCTGGTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGTAATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCCCTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGAATATTAATCTTGAAGAGATATGGACCGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGAGCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACAC]

[+] EMBL BM657478             [CGACCCACGCGTCCGGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAAACACCAACTGTGGGGCCCCAGTCGCGGTGGCCACATTCAGTCAGCCAAGAGCGTAGCAAATATCAGTCGATAATTACGACGAAACGGAACGCCCTGGGTCTGTGCCTGGCTGGTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGTAATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCCCTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGAATATTAATCTTGAAGAGATATGGACCGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGAGCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACAC]




>consensus_3921#2
CGACCCACGCGTCCGGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCC
GAAACACCAACTGTGGGGCCCCAGTCGCGGTGGCCACATTCAGTCAGCCAAGAGCGTAGC
AAATATCAGTCGATAATTACGACGAAACGGAACGCCCTGGGTCTGTGCCTGGCTGGTTCG
TGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGTAATTG
ACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCCCTAAT
CCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGAATATTAATCTTGAAGAG
ATATGGACCGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGAGCTCAGTTTGGGC
ATCGCACGCTACATGGAACTCTACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3921#1      ------------------------------------------------------------
consensus_3921#2      ------------------------------------------------------------
consensus_3921#0      AGATNGCCCCAGGATTAAACTCCCNATGANNNGCTANAGTGCCCTTCAAGATTATTCATC 60
                                                                                  

consensus_3921#1      ------------------------------------------------------------
consensus_3921#2      ------------------------------------------------------------
consensus_3921#0      TTGCAAGTAGTATATAGGACCTGATCTGGAAGCAGGTATAAAGCAGGTGTACAAACGGGA 120
                                                                                  

consensus_3921#1      ------------------------------------------------------------
consensus_3921#2      ------------------------------------------------------------
consensus_3921#0      GCTCAGTNTTGGGCATCGCACGCTTAACATGGCAACTCTANCACACATNGTCTANCAATT 180
                                                                                  

consensus_3921#1      ------------------------------------------------------------
consensus_3921#2      ------------------------------------------------------------
consensus_3921#0      ACTTGTACTGAGNTGTTGCACCAGCTATGAGGCCAACTCTGCTNCACTGTGGCTCGGTCG 240
                                                                                  

consensus_3921#1      ------------------------------------------------------------
consensus_3921#2      ------------------------------------------------------------
consensus_3921#0      ACANGNTATCTGAAGAAAAGTGGGATCAGGTGCACCTGGCGGGGNGTGNTGCCCAGACTG 300
                                                                                  

consensus_3921#1      --------------CCGCTGAAAGAAAGTCATCTTTCGACCCGAAACGGCTTCTTTCTTT 46
consensus_3921#2      -------------------------------------------------------CGACC 5
consensus_3921#0      GTCTGGCCAGTGAGCTGTNCANTNAGGGTTGNAAGAGAGTTTACTCGGAGCAAACTAACC 360
                                                                                  

consensus_3921#1      -CTCGTTACTGTGTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAA 105
consensus_3921#2      -CACGCGTCCG-GTTTAATCTGGTGCACGGAAGTTGCCAGCTACAGCTCCCCAGCCCGAA 63
consensus_3921#0      GTNCGTTAGCACGAGTGATGCGACCC-CAGAAATTGCGGGCATCCGGATCCTAGCATTGT 419
                         **       *  * **  *   * * *** ****  **  * *   ** ***     

consensus_3921#1      ACACCAACTGTGGGGCCCCAGTCGCGGTGGCCA---CATTCAGTCAGCCAAGAGCGTAGC 162
consensus_3921#2      ACACCAACTGTGGGGCCCCAGTCGCGGTGGCCA---CATTCAGTCAGCCAAGAGCGTAGC 120
consensus_3921#0      GCACGCGCCACAGTGGCACAAGTTNGNTAGAAAGCCTATCTAAANAAACAAAGNCCTGCC 479
                       ***   *    * * * **     * * *  *    **  *   *  ***   * *  *

consensus_3921#1      AAATATCAGTCGATAATTACGACGAAA-----CGGAACGCCCTGGGTCTGTGCCTGGCTG 217
consensus_3921#2      AAATATCAGTCGATAATTACGACGAAA-----CGGAACGCCCTGGGTCTGTGCCTGGCTG 175
consensus_3921#0      TTGNGGGCACTGCAGGTCATTCCCAGGTTCTTCCGCAGNCCAAAGGGTTGCCTNGGACAN 539
                                 *    * *   * *       * * *  **   **  **     * *  

consensus_3921#1      GTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGT 277
consensus_3921#2      GTTCGTGTAAATAAACCACGTTGGAGTGATTCTTTTTCCACCCCCCTCGTGTAATCGTGT 235
consensus_3921#0      NGGGATGGNANCNTANNAAGTAGGCCCTAAACGCCGTGNGANACCCAGGGACCACTATGT 599
                           **  *    *  * ** **    *  *    *      ***  *    *   ***

consensus_3921#1      AATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCC 337
consensus_3921#2      AATTGACGAAACCACACAACAGCACGCAGTAGACGGAAGGAAGCATTGAAGGATCTCTCC 295
consensus_3921#0      AGTAGCTGAAANANTCCGGCCGGAAA-GCTNGATTNACAGATGGCACGAGTGNGTCCCCT 658
                      * * *  ****     *  * * *     * **   *  ** *    **  *    * * 

consensus_3921#1      CTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGA----ATATTAAT 393
consensus_3921#2      CTAATCCAATGTCTAAACTAAACTCCCATGGGGCTACAGGGCTTAAGA----ATATTAAT 351
consensus_3921#0      NCAAANAAGGGGGGAAGCTGCTTGGCTACCNGGCAAGAAGTTCTTAACCCCCACGTNACA 718
                        **   *  *   ** **      * *   *** * * *   * *      *  * *  

consensus_3921#1      CTTGAAGAGATATGGAC----CGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGA 449
consensus_3921#2      CTTGAAGAGATATGGAC----CGATCTGGAAGCTGGGATAAAGCAGGTGTACAAACGGGA 407
consensus_3921#0      TGTNAACGGGCCTGGGAATTGCAGCCCNTGGACAGTCNCTCGGCGNACACNACGACTGGT 778
                        * **  *   ***      *   *      * *       **          ** ** 

consensus_3921#1      GCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACACACA-TGTCTACAATTACTGTA 508
consensus_3921#2      GCTCAGTTTGGGCATCGCACGCTACATGGAACTCTACAC--------------------- 446
consensus_3921#0      NTACGACACNGACNACATACNCT---TGGAACNAAACNCACAATGGCCCAAGCGGTNNAA 835
                         *      * *  *  ** **   ******   ** *                     

consensus_3921#1      CGAGTGTCCACCAGCAGCCCAACTCGCGCACGGGCTCGTCGAAGATATCGAAAAAAGGCA 568
consensus_3921#2      ------------------------------------------------------------
consensus_3921#0      CANACAGGCACAACCGGCATCACTGTAGGCCANTCTNGAANACNCGGAGACGTNTGGAAG 895
                                                                                  

consensus_3921#1      TCAGCGCACCGCCGGGCGGGGCCCAGTTGGTCGGCCAGGAGCTGTACAAACGGGTTGAAG 628
consensus_3921#2      ------------------------------------------------------------
consensus_3921#0      TGAACGGAACNGGCGGCCCGAAGCACCGCCACCACTNTGCGGGGGGAANAACACAGGTAA 955
                                                                                  

consensus_3921#1      GAGTTTCTC--------------------------------------------------- 637
consensus_3921#2      ------------------------------------------------------------
consensus_3921#0      GTACCCNAAACATATACCCCAGCCGNNAACAGCCAGGGATTGTTCCCCACGCGCGCATNG 1015
                                                                                  

consensus_3921#1      ------------------------------------------------------------
consensus_3921#2      ------------------------------------------------------------
consensus_3921#0      TCNACCACTACCGACAACTTATGGTANTGTAAACACAGCAGTACACAGAAGCGCCTCACN 1075
                                                                                  

consensus_3921#1      --
consensus_3921#2      --
consensus_3921#0      AG 1077