cluster # 3929

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Anopheles gambiae
cluster # 3929 cluster # 3929 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3929#0 length = 642 sequences # 1

consensus_3929#1 length = 584 sequences # 1
consensus_3929#2 length = 502 sequences # 1

consensusID : consensus_3929#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [GATCGCAGCAGGTTAAGCACTGTTGTGGAGCAGACGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGAAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCAAATCTGAGGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAACGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGANACAAGGCCAAGGAACAGAGCTGCAAGCAAGGGTNATGCATACACCTCGAAACTGCATCTATGTATCAACGCAGAAGCAACTCGGAGCCGTGCCCTGAACGATCGTTCANNAGCGACGTCTACAATCCAAAAGCACTAGTNGCTGGAGCCAGAGCCAAAACTTCCCAACTACTCG]

[+] EMBL AL696224             [GATCGCAGCAGGTTAAGCACTGTTGTGGAGCAGACGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGAAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCAAATCTGAGGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAACGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGANACAAGGCCAAGGAACAGAGCTGCAAGCAAGGGTNATGCATACACCTCGAAACTGCATCTATGTATCAACGCAGAAGCAACTCGGAGCCGTGCCCTGAACGATCGTTCANNAGCGACGTCTACAATCCAAAAGCACTAGTNGCTGGAGCCAGAGCCAAAACTTCCCAACTACTCG]




>consensus_3929#0
GATCGCAGCAGGTTAAGCACTGTTGTGGAGCAGACGCCAACCTTCCCAACTACTGAAGAG
TCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAG
ACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAG
AACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTA
TGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACAACCCAA
AGCACTGTTGTGAAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCAAATCTGAGGAG
GATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAACG
CGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGANACAAGGCCAAGG
AACAGAGCTGCAAGCAAGGGTNATGCATACACCTCGAAACTGCATCTATGTATCAACGCA
GAAGCAACTCGGAGCCGTGCCCTGAACGATCGTTCANNAGCGACGTCTACAATCCAAAAG
CACTAGTNGCTGGAGCCAGAGCCAAAACTTCCCAACTACTCG

consensusID : consensus_3929#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [AAGAGGAGTNTACCACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGNAAGAGTCCGAAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCTCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTANGAAGCGTGGNTCACCCTGAGACGTGCAACAAATACATCCTCCTGCTACAAGAACAAGGCCAAGGAACNGAGCTGCAAGAAGGGNTATGCATACACCTCGAAACCTGCNTCTATGTATCCAAGCAGAAGAATGGGAGCGGTGCCCCTGAACNATGTTCAAGAGG]

[+] EMBL BX626127             [AAGAGGAGTNTACCACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGNAAGAGTCCGAAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCTCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTANGAAGCGTGGNTCACCCTGAGACGTGCAACAAATACATCCTCCTGCTACAAGAACAAGGCCAAGGAACNGAGCTGCAAGAAGGGNTATGCATACACCTCGAAACCTGCNTCTATGTATCCAAGCAGAAGAATGGGAGCGGTGCCCCTGAACNATGTTCAAGAGG]




>consensus_3929#1
AAGAGGAGTNTACCACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTG
NAAGAGTCCGAAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGT
GCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGC
TACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTG
CATCTATGTATCAAGCAGAAGAATGGAGCGTGCTCTGACGATGTTCAAGAGGAGTCTACA
ACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACT
GGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTA
NGAAGCGTGGNTCACCCTGAGACGTGCAACAAATACATCCTCCTGCTACAAGAACAAGGC
CAAGGAACNGAGCTGCAAGAAGGGNTATGCATACACCTCGAAACCTGCNTCTATGTATCC
AAGCAGAAGAATGGGAGCGGTGCCCCTGAACNATGTTCAAGAGG

consensusID : consensus_3929#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [ATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAACTCTGGAACGTACGATTATCTGTGTGTCAATGCTATTCAAGGTAGCGTGCCCCATCCCGACTCCTGCACGAAATACATCGTCTGTTCCAATAGTAAGGCGAATGAAGAAAGCTGCAAGAATGGATACTACTTCTCGGTCTACCTGAAGTCATGCATCAAAGGAAACAGCGAAACTTGCGCTGAAATCAATGGAAACGATGGTAC]

[+] EMBL BX627606             [ATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAACTCTGGAACGTACGATTATCTGTGTGTCAATGCTATTCAAGGTAGCGTGCCCCATCCCGACTCCTGCACGAAATACATCGTCTGTTCCAATAGTAAGGCGAATGAAGAAAGCTGCAAGAATGGATACTACTTCTCGGTCTACCTGAAGTCATGCATCAAAGGAAACAGCGAAACTTGCGCTGAAATCAATGGAAACGATGGTAC]




>consensus_3929#2
ATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCG
TGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAAC
AGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGA
ATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGGAGC
CAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAACT
CTGGAACGTACGATTATCTGTGTGTCAATGCTATTCAAGGTAGCGTGCCCCATCCCGACT
CCTGCACGAAATACATCGTCTGTTCCAATAGTAAGGCGAATGAAGAAAGCTGCAAGAATG
GATACTACTTCTCGGTCTACCTGAAGTCATGCATCAAAGGAAACAGCGAAACTTGCGCTG
AAATCAATGGAAACGATGGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3929#0      -----GATCGCAGCAGGTTAAGCACTGTTGTGGAGCAGACGCCAACCTTCCCAACTACTG 55
consensus_3929#1      AAGAGGAGTNTACCACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTG 60
consensus_3929#2      ------------------------------------------------------------
                                                                                  

consensus_3929#0      AA-GAGTCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGT 114
consensus_3929#1      NAAGAGTCCGAAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGT 120
consensus_3929#2      ----------------------ATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGT 38
                                            **************************************

consensus_3929#0      GCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGC 174
consensus_3929#1      GCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGC 180
consensus_3929#2      GCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGC 98
                      ************************************************************

consensus_3929#0      TACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTG 234
consensus_3929#1      TACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTG 240
consensus_3929#2      TACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTG 158
                      ************************************************************

consensus_3929#0      CATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACA 294
consensus_3929#1      CATCTATGTATCAAGCAGAAGAATGGAGCGTGCTCTGACGATGTTCAAGAGGAGTCTACA 300
consensus_3929#2      CATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACA 218
                      ********************************* **************************

consensus_3929#0      ACCCAAAGCACTGTTGTGAAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCAAATCT 354
consensus_3929#1      ACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACT 360
consensus_3929#2      ACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACT 278
                      ****************** ***********************************  * **

consensus_3929#0      GAGGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTA 414
consensus_3929#1      GGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTA 420
consensus_3929#2      GGAGAGGATTCCTCGGAGAACTCTGGAACGTACGATTATCTGTGTGTCAATGCTATTCAA 338
                      *  **************** ************************** ***  ** **  *

consensus_3929#0      GGAACGCGTGGCTCACCCTGAGACGTGCAACAAATACATC-TCCTGCTACAAGANACAAG 473
consensus_3929#1      NGAA-GCGTGGNTCACCCTGAGACGTGCAACAAATACATCCTCCTGCTACAAGAA-CAAG 478
consensus_3929#2      GGTA-GCGTGCCCCATCCCGACTCCTGCACGAAATACATC-GTCTGTTCCAATAG-TAAG 395
                       * * *****   ** ** **  * ****  *********   *** * *** *   ***

consensus_3929#0      GCCAAGGAACAGAGCTGCAAGCAAGGGTNATGCATACACCTCGAA--AC-TGCATCTATG 530
consensus_3929#1      GCCAAGGAACNGAGCTGCAAG-AAGGGNTATGCATACACCTCGAA--ACCTGCNTCTATG 535
consensus_3929#2      GCGAATGAAGAAAGCTGCAAG-AATGGATAC---TACTTCTCGGTCTACCTGAAGTCATG 451
                      ** ** ***   ********* ** **  *    ***  ****    ** **     ***

consensus_3929#0      TATCAACGCAGAAGCAACTCGGAGCCGTGCCC-TGAACGATCGTTCANNAGCGACGTCTA 589
consensus_3929#1      TATCCAAGCAGAAGAA--TGGGAGCGGTGCCCCTGAACNAT-GTTCAAGAGG-------- 584
consensus_3929#2      CATCAAAG--GAAACA---GCGAAACTTGCGCTGAAATCAATGGAAACGATGGTAC---- 502
                       *** * *  ***  *     **    *** *   **  *  *   *  *          

consensus_3929#0      CAATCCAAAAGCACTAGTNGCTGGAGCCAGAGCCAAAACTTCCCAACTACTCG 642
consensus_3929#1      -----------------------------------------------------
consensus_3929#2      -----------------------------------------------------