cluster # 3930

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Anopheles gambiae
cluster # 3930 cluster # 3930 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3930#0 length = 666 sequences # 2

consensus_3930#1 length = 325 sequences # 1

consensusID : consensus_3930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 666
fasta sequence

                              [CCGCGAAACGTAAACATTGAAGTTGCTTTTCTGGCATTTTCTCCTTTTTGCAAAAGAAATCCATAATTAAAGAAATATGCAAAGAAAGGGCGACGGAAAGCCGGCCGATCTGTTGGAACACTTCAAACCGGCACAGGAGGCAGACCTGGCGATACACGTGAAAAAGATAGAAGAAGTGAAGCAATGGCTAACAGCAGCGAAAAAACTACACCCCGCAACGCAAATCCTGCTCGTTACGGGCCCATCCGGCAGCGGCAAAAGCGTTTGCCTGAAAACGCTCGCCAAATCGCTCGGCTACAGCATCCATGAGTGGACGACACCGGTCGATGTGGATCTGTACTACGACGATAAGTTCGATTTCGACCAGGATCGGGTGGAGAAGCAAGGCCGCCGGCCACAGAAGGCACTGTTTGATGATTTCCTGTACAAAACGTCACGCTACTGCTCGCTGTTTGCCAGTGCGGCGGGCGAATCGTCGAAGCTGCTGCTGGTGAAGGATTTTCCCAACTCGATGCTCCGGTCGCCGGAAGAGTTTCACGATTCGCTGGACCGCTTCCGGGACAGCAGCACGGATCCGATCGTCTTCATCGCCACCGATACGGCCAGCAAATCGCTGGACGTGGCGTACAATCTGTTCCCGCCGGCCGTGCTGGAAAGCTTCCAGAT]

[+] EMBL BM575782             [CCGCGAAACGTAAACATTGAAGTTGCTTTTCTGGCATTTTCTCCTTTTTGCAAAAGAAATCCATAATTAAAGAAATATGCAAAGAAAGGGCGACGGAAAGCCGGCCGATCTGTTGGAACACTTCAAACCGGCACAGGAGGCAGACCTGGCGATACACGTGAAAAAGATAGAAGAAGTGAAGCAATGGCTAACAGCAGCGAAAAAACTACACCCCGCAACGCAAATCCTGCTCGTTACGGGCCCATCCGGCAGCGGCAAAAGCGTTTGCCTGAAAACGCTCGCCAAATCGCTCGGCTACAGCATCCATGAGTGGACGACACCGGTCGATGTGGATCTGTACTACGACGATAAGTTCGATTTCGACCAGGATCGGGTGGAGAAGCAAGGCCGCCGGCCACAGAAGGCACTGTTTGATGATTTCCTGTACAAAACGTCACGCTACTGCTCGCTGTTTGCCAGTGCGGCGGGCGAATCGTCGAAGCTGCTGCTGGTGAAGGATTTTCCCAACTCGATGCTCCGGTCGCCGGAAGAGTTTCACGATTCGCTGGACCGCTTCCGGGACAGCAGCACGGATCCGATCGTCTTCATCGCCACCGATACGGCCAGCAAATCGCTGGACGTGGCGTACAATCTGTTCCCGCCGGCCGTGCTGGAAAGCTTCCAGAT]
[+] EMBL BX626293             [                                              TTTGCATAAGAAATCCACAATTAAAGAAATATGCAAAGAAAGGGCGACGGAAAGCCGGCCGATCTGTTGGAACACTTCAAACCGGCACAGGAGGCAGACCTGGCGATACACGTGAAAAAGATAGAAGAAGTGAAGCAATGGCTAACAGCAGCGAAAAAACT CACCCCGCAACGCAAATCCTGCTCGTCACGGGCCCATCCGGCAGCGGCAAAAGCGTTTGCCTGAAAACGCTCGCCAAAGCGCTCGGCTACAGCATCCATGAGTGGACGACACCGGTCGATNTGGATCTGTACTACGACGATAAGTTCGATTTCGACCAGGATCGGGTGGAGAAGCAAGGCCGCCGGCCACAGAAGGCCCTGTTTGACGATTTCCTGTACAAAACGTCACGNTACTGCTCGCTGTTTGCCAGTGCG                                                                                                                                                                                                           ]




>consensus_3930#0
CCGCGAAACGTAAACATTGAAGTTGCTTTTCTGGCATTTTCTCCTTTTTGCAAAAGAAAT
CCATAATTAAAGAAATATGCAAAGAAAGGGCGACGGAAAGCCGGCCGATCTGTTGGAACA
CTTCAAACCGGCACAGGAGGCAGACCTGGCGATACACGTGAAAAAGATAGAAGAAGTGAA
GCAATGGCTAACAGCAGCGAAAAAACTACACCCCGCAACGCAAATCCTGCTCGTTACGGG
CCCATCCGGCAGCGGCAAAAGCGTTTGCCTGAAAACGCTCGCCAAATCGCTCGGCTACAG
CATCCATGAGTGGACGACACCGGTCGATGTGGATCTGTACTACGACGATAAGTTCGATTT
CGACCAGGATCGGGTGGAGAAGCAAGGCCGCCGGCCACAGAAGGCACTGTTTGATGATTT
CCTGTACAAAACGTCACGCTACTGCTCGCTGTTTGCCAGTGCGGCGGGCGAATCGTCGAA
GCTGCTGCTGGTGAAGGATTTTCCCAACTCGATGCTCCGGTCGCCGGAAGAGTTTCACGA
TTCGCTGGACCGCTTCCGGGACAGCAGCACGGATCCGATCGTCTTCATCGCCACCGATAC
GGCCAGCAAATCGCTGGACGTGGCGTACAATCTGTTCCCGCCGGCCGTGCTGGAAAGCTT
CCAGAT

consensusID : consensus_3930#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence

                              [GATCGCAGAGTGAAGTCCAAATAATCGGTTTTAAACCGGAAAACGTTAAACATTGAAGTTGCTTTTCTGGGGGCATTTTCTCCTTTTTGCATAAGAAATCCACAATTAAGAATATGCAAAGAAAGGGCGACGGAAAGCCGGCGATCTGTTGGGGGAAAAACACTTCAAAAAAACCCGGCACAGGAGGCAGACCTGGCGATACACGTGAAAAAGATAGAAGAAGTGAAGCAATGGCTAACAGCAGCGAAAAAACTACACCCCGGAACGCAAATCCTGCTCGTCACGGGCCCATCCGGCAGCGGCAAAAGCGTTTGCCTGAAAACGC]

[+] EMBL AL696245             [GATCGCAGAGTGAAGTCCAAATAATCGGTTTTAAACCGGAAAACGTTAAACATTGAAGTTGCTTTTCTGGGGGCATTTTCTCCTTTTTGCATAAGAAATCCACAATTAAGAATATGCAAAGAAAGGGCGACGGAAAGCCGGCGATCTGTTGGGGGAAAAACACTTCAAAAAAACCCGGCACAGGAGGCAGACCTGGCGATACACGTGAAAAAGATAGAAGAAGTGAAGCAATGGCTAACAGCAGCGAAAAAACTACACCCCGGAACGCAAATCCTGCTCGTCACGGGCCCATCCGGCAGCGGCAAAAGCGTTTGCCTGAAAACGC]




>consensus_3930#1
GATCGCAGAGTGAAGTCCAAATAATCGGTTTTAAACCGGAAAACGTTAAACATTGAAGTT
GCTTTTCTGGGGGCATTTTCTCCTTTTTGCATAAGAAATCCACAATTAAGAATATGCAAA
GAAAGGGCGACGGAAAGCCGGCGATCTGTTGGGGGAAAAACACTTCAAAAAAACCCGGCA
CAGGAGGCAGACCTGGCGATACACGTGAAAAAGATAGAAGAAGTGAAGCAATGGCTAACA
GCAGCGAAAAAACTACACCCCGGAACGCAAATCCTGCTCGTCACGGGCCCATCCGGCAGC
GGCAAAAGCGTTTGCCTGAAAACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3930#0      -----------------------------------CCGCGAAACGT-AAACATTGAAGTT 24
consensus_3930#1      GATCGCAGAGTGAAGTCCAAATAATCGGTTTTAAACCGGAAAACGTTAAACATTGAAGTT 60
                                                         ***  ****** *************

consensus_3930#0      GCTTTTCTGG---CATTTTCTCCTTTTTGCAAAAGAAATCCATAATTAAAGAAATATGCA 81
consensus_3930#1      GCTTTTCTGGGGGCATTTTCTCCTTTTTGCATAAGAAATCCACAATTAA--GAATATGCA 118
                      **********   ****************** ********** ******   ********

consensus_3930#0      AAGAAAGGGCGACGGAAAGCCGGCCGATCTGTTGG------AACACTTCAAA-----CCG 130
consensus_3930#1      AAGAAAGGGCGACGGAAAGCCGGC-GATCTGTTGGGGGAAAAACACTTCAAAAAAACCCG 177
                      ************************ **********      ***********     ***

consensus_3930#0      GCACAGGAGGCAGACCTGGCGATACACGTGAAAAAGATAGAAGAAGTGAAGCAATGGCTA 190
consensus_3930#1      GCACAGGAGGCAGACCTGGCGATACACGTGAAAAAGATAGAAGAAGTGAAGCAATGGCTA 237
                      ************************************************************

consensus_3930#0      ACAGCAGCGAAAAAACTACACCCCGCAACGCAAATCCTGCTCGTTACGGGCCCATCCGGC 250
consensus_3930#1      ACAGCAGCGAAAAAACTACACCCCGGAACGCAAATCCTGCTCGTCACGGGCCCATCCGGC 297
                      ************************* ****************** ***************

consensus_3930#0      AGCGGCAAAAGCGTTTGCCTGAAAACGCTCGCCAAATCGCTCGGCTACAGCATCCATGAG 310
consensus_3930#1      AGCGGCAAAAGCGTTTGCCTGAAAACGC-------------------------------- 325
                      ****************************                                

consensus_3930#0      TGGACGACACCGGTCGATGTGGATCTGTACTACGACGATAAGTTCGATTTCGACCAGGAT 370
consensus_3930#1      ------------------------------------------------------------
                                                                                  

consensus_3930#0      CGGGTGGAGAAGCAAGGCCGCCGGCCACAGAAGGCACTGTTTGATGATTTCCTGTACAAA 430
consensus_3930#1      ------------------------------------------------------------
                                                                                  

consensus_3930#0      ACGTCACGCTACTGCTCGCTGTTTGCCAGTGCGGCGGGCGAATCGTCGAAGCTGCTGCTG 490
consensus_3930#1      ------------------------------------------------------------
                                                                                  

consensus_3930#0      GTGAAGGATTTTCCCAACTCGATGCTCCGGTCGCCGGAAGAGTTTCACGATTCGCTGGAC 550
consensus_3930#1      ------------------------------------------------------------
                                                                                  

consensus_3930#0      CGCTTCCGGGACAGCAGCACGGATCCGATCGTCTTCATCGCCACCGATACGGCCAGCAAA 610
consensus_3930#1      ------------------------------------------------------------
                                                                                  

consensus_3930#0      TCGCTGGACGTGGCGTACAATCTGTTCCCGCCGGCCGTGCTGGAAAGCTTCCAGAT 666
consensus_3930#1      --------------------------------------------------------