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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1219 fasta sequence
[GCAGATCCCCACGCAGNNTANCTTTACATCGTTGTCGTCAAACCCAAGAAAGCGAATGCAAAACCACTTACATGCATACTTAGTAGTATATATACAGACATGCGTACTTGCTAAGAGTTAGTTAGTTAAGAAAGATGTTTAGCAATAAACCCGACCGGTATTAAGTTCTCTCCCCGCGGCTGTGTGTCCCTTAGTGCTCGCTCCATTACCCCCCGCATTACCTCATTAGGCGATTAGGAACAGCGGCTGGGACGCACGCGGGAGAGATTTCTACTGACTGAGGGTGCTTGGTATATTACAGGTCAGTTAGGTCCGGTGCTTTGCAGGGTGATCCCTTTGCACAACGATCAACTGCGGCAGCCGGAAATAGATTAATTAAGGAAAGCTTGGCACGTTCGTCGCTTGCTTACCGTTGAGTGTATTCAGTTTTCGTAATGTTGTGCTAGTTTATTTTCCTGCATTCTTCANAGCTGGTCATACATATATACATTTACGATANCGTTTGTACATAGGTTTGCGATAGTATNNTTTGCGTGAGTATTTTAAACCGTGTCTTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCCANCGTGCGCCCCATAGGGGCCGGAAAGATAAAAATAGGCACATTGAAAACACCAGCGAAAGCGAGCATCCGTATTATGATTCATTAACTGTGGAGGGTGGAGTGTCTCAACGTTTTCCCAAATACAAGTGGGAATTGTTTGGAATTGTTTTTTTAGCTCTATTTCATGGTGCTCTAATTTTGGAAACGATTCGAGTTTGCTCCTTCAAAACACATGGTGAAGGAGATTGAGAAGATCTTCGTCTGACGGGGAACGTCGTAAATGTCACTCGACTGTTCGTTTCAATCGGTTCCAGTGGCCGCGTGCGGAAAGGGCAGGTTAAATTTAGACTGACGACCGTTCACTCCATTAGCCTTAACAGGTTCCAGCTGAAAGCAATATGATTTAAAAATAAAACACAACGGACACAACATACGCACGATCACATACATAGCCCGTATCCATAGCACAGTGGATCATCAATCCGCATAGAATATGATCCGCACGCTTGCTGTAAGTTGATGAGAAATGAGGAGAAATGAGAAATCGCTACGCTTCGCACAGTTTAAGACAGTGNTGTAGTGCGCAGATTTAGTCNACGGCNATATTTATTATACCTTCNCATGGGGGANATGCTTTTGGTGCAGTAAG]
[+] EMBL AL696347 [GCAGATCCCCACGCAGNNTANCTTTACATCGTTGTCGTCAAACCCAAGAAAGCGAATGCAAAACCACTTACATGCATACTTAGTAGTATATATACAGACATGCGTACTTGCTAAGAGTTAGTTAGTTAAGAAAGATGTTTAGCAATAAACCCGACCGGTATTAAGTTCTCTCCCCGCGGCTGTGTGTCCCTTAGTGCTCGCTCCATTACCCCCCGCATTACCTCATTAGGCGATTAGGAACAGCGGCTGGGACGCACGCGGGAGAGATTTCTACTGACTGAGGGTGCTTGGTATATTACAGGTCAGTTAGGTCCGGTGCTTTGCAGGGTGATCCCTTTGCACAACGATCAACTGCGGCAGCCGGAAATAGATTAATTAAGGAAAGCTTGGCACGTTCGTCGCTTGCTTACCGTTGAGTGTATTCAGTTTTCGTAATGTTGTGCTAGTTTATTTTCCTGCATTCTTCANAGCTGGTCATACATATATACATTTACGATANCGTTTGTACATAGGTTTGCGATAGTATNNTTTGCGTGAGTATTTTAAACCGTGTCTTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCCANCGTGC ]
[+] EMBL BX620001 [ TTCCTGCATTCTTCA GGCTGGTCATACATATATACATTTACGATAGCGTTTGTACATAGGTTTGCGATAGTAT TTTTGCGTGAGTATTTTAAACCGTGT TTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCCAGCGTGCGCCCCATAGGGGCCGGAAAGATAAAAATAGGCACATTGAAAACACCAGCGAAAGCGAGCATCCGTATTATGATTCATTAACTGTGGAGGGTGGAGTGTCTCAACGTTTTCCCAAATACAAGTGGGAATTGTTTGGAATTGTTTTTTTAGCTCTATTTCATGGTGCTCTAATTTTGGAAACGATTCGAGTTTGCTCCTTCAAAACACATGGTGAAGGAGATTGAGAAGATCTTCGTCTGACGGGGAACGTCGTAAATGTCACTCGACTGTTCGTTTCAATCGGTTCCAGTGGCCGCGTGCGGAAAGGGCAGGTTAAATTTAGACTGACGACCGTTCACTCCATTAGCCTTAACAGGTTCCAGCTGAAAGCAATATGATTTAAAAATAAAACACAACGGACACAACATACGCACGATCACATACATAGCCCGTATCCATAGCACAGTGGATCATCAATCCGCATAGAATATGATCCGCACGCTTGCTGTAAGTTGATGAGAAATGAGGAGAAATGAGAAATCGCTACGCTTCGCACAGTTTAAGACAGTGNTGTAGTGCGCAGATTTAGTCNACGGCNATATTTATTATACCTTCNCATGGGGGANATGCTTTTGGTGCAGTAAG]
consensusID : consensus_3936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[TAGCTAANCTATTTTCCTGCATTCTTCAACGCTGGGTCATACATATATACATTTACGATAGCGTTTGTACATAAGTTTGCGATAGNTATTTTCTCGCGTGAGTATTTTAAACCGTGTTTAACGGTCAGCGCATTTAAAGCTTTTCTACTTNCCCAGCGTGCGCCCCATANGGGCCGGAAAGATNAACATAGTGCACATTGANAAACACCAGCGAAAGCGAGCATCCGCTATTATGATTCATTAAGCTGCTGCGAGCGGTGCGAGCTGTCTCAACGTATTTTCCCAAATACAACGCTGGGAACTNTGGTCTGGGNACTCTGTCTTNTCTCAGCTCTATTTCCATGGGTGGCTCCTAATTTTGGAAACGATTCGAGTTTTGCTCCTTCAAAGACACATTGTGTGACACGGACGACTTGACCGAACGCATCTTCGTCCTGACGGGGGAACGTTCGTAACATGTCCACTCGAACTNGGTGCGNTTTTCAACTCTGGGTTCCAGTGTGCCCGCGTGCCGNGAAAGAGGCGAGCGTTAANAAGTTTACGGACTGGACGAACCGGTTCACCTCCACTATAGACCTTTAAACAGGGTTTCCANACTGAAAAGGCACAACTATTGATTTTACAAAACTACAAACACAAACGGGAGA]
[+] EMBL AL933382 [TAGCTAANCTATTTTCCTGCATTCTTCAACGCTGGGTCATACATATATACATTTACGATAGCGTTTGTACATAAGTTTGCGATAGNTATTTTCTCGCGTGAGTATTTTAAACCGTGTTTAACGGTCAGCGCATTTAAAGCTTTTCTACTTNCCCAGCGTGCGCCCCATANGGGCCGGAAAGATNAACATAGTGCACATTGANAAACACCAGCGAAAGCGAGCATCCGCTATTATGATTCATTAAGCTGCTGCGAGCGGTGCGAGCTGTCTCAACGTATTTTCCCAAATACAACGCTGGGAACTNTGGTCTGGGNACTCTGTCTTNTCTCAGCTCTATTTCCATGGGTGGCTCCTAATTTTGGAAACGATTCGAGTTTTGCTCCTTCAAAGACACATTGTGTGACACGGACGACTTGACCGAACGCATCTTCGTCCTGACGGGGGAACGTTCGTAACATGTCCACTCGAACTNGGTGCGNTTTTCAACTCTGGGTTCCAGTGTGCCCGCGTGCCGNGAAAGAGGCGAGCGTTAANAAGTTTACGGACTGGACGAACCGGTTCACCTCCACTATAGACCTTTAAACAGGGTTTCCANACTGAAAAGGCACAACTATTGATTTTACAAAACTACAAACACAAACGGGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3936#0 GCAGATCCCCACGCAGNNTANCTTTACATCGTTGTCGTCAAACCCAAGAAAGCGAATGCA 60
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 AAACCACTTACATGCATACTTAGTAGTATATATACAGACATGCGTACTTGCTAAGAGTTA 120
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 GTTAGTTAAGAAAGATGTTTAGCAATAAACCCGACCGGTATTAAGTTCTCTCCCCGCGGC 180
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 TGTGTGTCCCTTAGTGCTCGCTCCATTACCCCCCGCATTACCTCATTAGGCGATTAGGAA 240
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 CAGCGGCTGGGACGCACGCGGGAGAGATTTCTACTGACTGAGGGTGCTTGGTATATTACA 300
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 GGTCAGTTAGGTCCGGTGCTTTGCAGGGTGATCCCTTTGCACAACGATCAACTGCGGCAG 360
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 CCGGAAATAGATTAATTAAGGAAAGCTTGGCACGTTCGTCGCTTGCTTACCGTTGAGTGT 420
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 ATTCAGTTTTCGTAATGTTGTGCTAGTTTATTTTCCTGCATTCTTCANAGCTGG-TCATA 479
consensus_3936#1 -------------------TAGCTAANCTATTTTCCTGCATTCTTCAACGCTGGGTCATA 41
**** ******************* ***** *****
consensus_3936#0 CATATATACATTTACGATANCGTTTGTACATAGGTTTGCGATAGTA--TNNTTTGCGTGA 537
consensus_3936#1 CATATATACATTTACGATAGCGTTTGTACATAAGTTTGCGATAGNTATTTTCTCGCGTGA 101
******************* ************ *********** * * ******
consensus_3936#0 GTATTTTAAACCGTGTCTTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCC-ANCGTGC 596
consensus_3936#1 GTATTTTAAACCGTGTTTAACGGTCAGCGCATTTAAAGCTTTTCTACTTNCCCAGCGTGC 161
**************** * * **************************** ** * *****
consensus_3936#0 GCCCCATAGGGGCCGGAAAGATAAAAATAG-GCACATTGAAAA-CACCAGCGAAAGCGAG 654
consensus_3936#1 GCCCCATANGGGCCGGAAAGATNAACATAGTGCACATTGANAAACACCAGCGAAAGCGAG 221
******** ************* ** **** ********* ** ****************
consensus_3936#0 CATCCG-TATTATGATTCATTAA----CTGTGGAGGGTG-GAG-TGTCTCAACGT--TTT 705
consensus_3936#1 CATCCGCTATTATGATTCATTAAGCTGCTGCGAGCGGTGCGAGCTGTCTCAACGTATTTT 281
****** **************** *** * **** *** *********** ***
consensus_3936#0 CCCAAATACAAG--TGGGAATTGT----TTGGAATTGT----TTTTTTAGCTCTATTTC- 754
consensus_3936#1 CCCAAATACAACGCTGGGAACTNTGGTCTGGGNACTCTGTCTTNTCTCAGCTCTATTTCC 341
*********** ****** * * * ** * * * * * * ***********
consensus_3936#0 ATGGT--GCTC-TAATTTTGGAAACGATTCGAGTTT-GCTCCTTCAAA-ACACATGGTG- 808
consensus_3936#1 ATGGGTGGCTCCTAATTTTGGAAACGATTCGAGTTTTGCTCCTTCAAAGACACATTGTGT 401
**** **** ************************ *********** ****** ***
consensus_3936#0 ---AAGGA------GATTGAGAAGATCTTCGTC-TGACGGGG-AACGT-CGTAA-ATGTC 855
consensus_3936#1 GACACGGACGACTTGACCGAACGCATCTTCGTCCTGACGGGGGAACGTTCGTAACATGTC 461
* *** ** ** ********* ******** ***** ***** *****
consensus_3936#0 -ACTCGAC-----TGTTCGTTTCAATC---GGTTCCAGTGG--CCGCGTGC---GGAAAG 901
consensus_3936#1 CACTCGAACTNGGTGCGNTTTTCAACTCTGGGTTCCAGTGTGCCCGCGTGCCGNGAAAGA 521
****** ** ****** ********** ******** * **
consensus_3936#0 GGCAGGTTAAATTTAGACTGACGACCGTTCACTCCA-TTAGCCTTAACAGGTTCCAGCTG 960
consensus_3936#1 GGCGAGCGTTAANAAGTTTACGGACTGGACGAACCGGTTCACCTCCACTA--TAGACCTT 579
*** * * ** * *** * * ** ** *** ** * * **
consensus_3936#0 AAAGCAATATGATTTAAAAATAAAACACAACGGACACAACATACGCACGATCACATACAT 1020
consensus_3936#1 TAAACAGGGT--TTCCANACTGAAAAGGCACAACTATTGATTTTACAAAACTACAAACAC 637
** ** * ** * * * *** ** * * ** * *** ***
consensus_3936#0 AGCCCGTATCCATAGCACAGTGGATCATCAATCCGCATAGAATATGATCCGCACGCTTGC 1080
consensus_3936#1 AAACGGGAGA-------------------------------------------------- 647
* * * *
consensus_3936#0 TGTAAGTTGATGAGAAATGAGGAGAAATGAGAAATCGCTACGCTTCGCACAGTTTAAGAC 1140
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 AGTGNTGTAGTGCGCAGATTTAGTCNACGGCNATATTTATTATACCTTCNCATGGGGGAN 1200
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 ATGCTTTTGGTGCAGTAAG 1219
consensus_3936#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||