|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence
[AGCAGAATCCCGCNGGTTNAATGTCTCGTTTGTGAGACACTTGCAACTGGTCNTACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGGCATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCCTTTGCGAGTGTAGGAAACATTGTTAGGAATGTATCGTTTGTTATGGTGTCGTGTGTTAGTGTGTTGAAACATTCCTTTCCTGAATCATACAGTATGGCAGCTGTATAAACTTGTTGCTGGAACATANCATAATCACATGCACATAGTGACATACAGTGTGCATGGTTGCAACATGCATCGCTTGTNNTTTCTCAACACTGCTTAACTTTNACAAGCTANCTCAAACATTGTTACCCGCGCAAACACTGTTTCACAAACATAAGGCTACGAGCACGTGCAGCGAACAAACGGCACGGGGCGCTATACANAGGGGTGTAGCTTTCACTTACACGTTCCTGTAAGTAACTGCTAGACAGGGGTCGTATCAACATTGCATAAACTTGCATNGTAAGANATACTGCTGGTCACGGTACANCNNATAGGGACCACAGTTCTCCTCAGGAGNGTATAGNNAACCGTCGAGGCCACNGCNCGTACCGTCNCAAAACCAGTTTCTACTTACAGCTTANCTAACGCTGGTAATTCGCGNGGAACNCCATTGACTTTGCCAAACTAGGACGCGAACTCTAAAAAACACGTAATGATTGCATNTGGTGANCANACANCGACTGTCAAGCATCACTTGCTGGGATTACCGGACTACCCAGCACACGGCANGNTCAAGNCACTGTNTTAAAAAATCCCCACGGNNTCAACAAGCGTTTAACAACCCNTCTACCACACATCATACCACCGGGGAGACTAACACAGCGACAAGGATTATGAACAA]
[+] EMBL AL929951 [AGCAGAATCCCGCNGGTTNAATGTCTCGTTTGTGAGACACTTGCAACTGGTCNTACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGGCATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCCTTTGCGAGTGTAGGAAACATTGTTAGGAATGTATCGTTTGTTATGGTGTCGTGTGTTAGTGTGTTGAAACATTCCTTTCCTGAATCATACAGTATGGCAGCTGTATAAACTTGTTGCTGGAACATANCATAATCACATGCACATAGTGACATACAGTGTGCATGGTTGCAACATGCATCGCTTGTNNTTTCTCAACACTGCTTAACTTTNACAAGCTANCTCAAACATTGTTACCCGCGCAAACACTGTTTCACAAACATAAGGCTACGAGCACGTGCAGCGAACAAACGGCACGGGGCGCTATACANAGGGGTGTAGCTTTCACTTACACGTTCCTGTAAGTAACTGCTAGACAGGGGTCGTATCAACATTGCATAAACTTGCATNGTAAGANATACTGCTGGTCACGGTACANCNNATAGGGACCACAGTTCTCCTCAGGAGNGTATAGNNAACCGTCGAGGCCACNGCNCGTACCGTCNCAAAACCAGTTTCTACTTACAGCTTANCTAACGCTGGTAATTCGCGNGGAACNCCATTGACTTTGCCAAACTAGGACGCGAACTCTAAAAAACACGTAATGATTGCATNTGGTGANCANACANCGACTGTCAAGCATCACTTGCTGGGATTACCGGACTACCCAGCACACGGCANGNTCAAGNCACTGTNTTAAAAAATCCCCACGGNNTCAACAAGCGTTTAACAACCCNTCTACCACACATCATACCACCGGGGAGACTAACACAGCGACAAGGATTATGAACAA]
consensusID : consensus_3951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 878 fasta sequence
[CCNAGCAGAATTCCCGAGGTTACACTTTTGTCATACTACAATGAAGACGCGCTCGTACGTGCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACCGANCGATCATCATTCGTCATTGTGCTGCAAGCAGTGTCTCGTTTGTGAGACCACTTGCAAACTGGTCGACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCGGATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTANTCGAGCAAAATTCGTGTGCAACCCCCTTTGCGAGTGTAGGGAAACATTGTTAGGGAACTGTTCGTTCTGTTTGGGTGTCGTGTGTTAGGTGTGGTGAAAACCATTTCCTTTCCTGAAATCATACCAAGGTATGGGCCACAGTGGTATAAAACTTGGTTGGCCTCGGGCAAAATTAACATAAATCAACATTGAACCATTAGGTGGAACATTACAAGTGGTGCATTGGGTCTTGCGACAAANTCGATCGGTTGTATCTTAAAAAATGGCCTTAAACTTTTTATACCACAGGCTTAACCTCAAAAACATTGGTTCCCCGNCGAAAAAACCTTCGTTTCCAACCACACATAAAGGGGCTTACCGAANGCCACGTGCAANCCCGAAACAAAACGACAGGGGCCGCTTATTACACACAAGGGGTTGTCGCNTTTACCAACCTTTTACCCACGTTTCCCTGTACAAGGTTAACCGCTAAGGANCAGGGGTTCCGTTCAACATGAATAAACTTGCAATTGTAACGAGTTGTCNTCTGCTGAGTCGGTTGTTCAAGATTATGGGGACCCACAGTCTCTCCCTCAAGAGGGTTGCTTCCCGTTCGGCCAAGCTACAGATCGAAACA]
[+] EMBL AL696523 [CCNAGCAGAATTCCCGAGGTTACACTTTTGTCATACTACAATGAAGACGCGCTCGTACGTGCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACCGANCGATCATCATTCGTCATTGTGCTGCAAGCAGTGTCTCGTTTGTGAGACCACTTGCAAACTGGTCGACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCGGATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTANTCGAGCAAAATTCGTGTGCAACCCCCTTTGCGAGTGTAGGGAAACATTGTTAGGGAACTGTTCGTTCTGTTTGGGTGTCGTGTGTTAGGTGTGGTGAAAACCATTTCCTTTCCTGAAATCATACCAAGGTATGGGCCACAGTGGTATAAAACTTGGTTGGCCTCGGGCAAAATTAACATAAATCAACATTGAACCATTAGGTGGAACATTACAAGTGGTGCATTGGGTCTTGCGACAAANTCGATCGGTTGTATCTTAAAAAATGGCCTTAAACTTTTTATACCACAGGCTTAACCTCAAAAACATTGGTTCCCCGNCGAAAAAACCTTCGTTTCCAACCACACATAAAGGGGCTTACCGAANGCCACGTGCAANCCCGAAACAAAACGACAGGGGCCGCTTATTACACACAAGGGGTTGTCGCNTTTACCAACCTTTTACCCACGTTTCCCTGTACAAGGTTAACCGCTAAGGANCAGGGGTTCCGTTCAACATGAATAAACTTGCAATTGTAACGAGTTGTCNTCTGCTGAGTCGGTTGTTCAAGATTATGGGGACCCACAGTCTCTCCCTCAAGAGGGTTGCTTCCCGTTCGGCCAAGCTACAGATCGAAACA]
consensusID : consensus_3951#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[TTATTAAAAAGGAACAACTTTTGTCATACTACAATGAAGACGCGCTCGTACGTGCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACCACCGATCATCATTCGTCATTGTGCTGCAAGCAGTGTCTCGTTTGTGAGACCACTTGCAAACTGGTCGACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGGATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCCTTTGCGAGTGTAGGAAACATTGTTAGGAATGTTCGTTTGTTTGGTGTCGTGTGTTAGTGTGTTGAAACATTCCTTTCCTGAATCATACAGTTGGCAGTGTATAAACTTGTTGCTGGAAATAAATAATCACATGACATAGTGACATACAGTGTGCATGGTTGCAAATGATCGTTGTTTTTAAAATGCTTAACTTTTACAAGCTACCTCAAACATTGTTCCGCGAAAACTGTTTCAAAAATAAGGCTACGAGCACGTGCAGCCGAACAACGACGGGCGCTATAAAAGGGTGTGCTTTCACTTACACGTTCCTGTAAGTAACGCTAGACAGGGGTCGTTCAACATGAATAACTTGCATGTAGTTTTTCTGCTGGTCGTGTTAGTTATGGGACCACAGCTCTCCTCAGG]
[+] EMBL BX628999 [TTATTAAAAAGGAACAACTTTTGTCATACTACAATGAAGACGCGCTCGTACGTGCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACCACCGATCATCATTCGTCATTGTGCTGCAAGCAGTGTCTCGTTTGTGAGACCACTTGCAAACTGGTCGACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGGATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCCTTTGCGAGTGTAGGAAACATTGTTAGGAATGTTCGTTTGTTTGGTGTCGTGTGTTAGTGTGTTGAAACATTCCTTTCCTGAATCATACAGTTGGCAGTGTATAAACTTGTTGCTGGAAATAAATAATCACATGACATAGTGACATACAGTGTGCATGGTTGCAAATGATCGTTGTTTTTAAAATGCTTAACTTTTACAAGCTACCTCAAACATTGTTCCGCGAAAACTGTTTCAAAAATAAGGCTACGAGCACGTGCAGCCGAACAACGACGGGCGCTATAAAAGGGTGTGCTTTCACTTACACGTTCCTGTAAGTAACGCTAGACAGGGGTCGTTCAACATGAATAACTTGCATGTAGTTTTTCTGCTGGTCGTGTTAGTTATGGGACCACAGCTCTCCTCAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3951#1 CCNAGCAGAATTCCCGAGGTTACACTTTTGTCATACTACAATGAAGACGCGCTCGTACGT 60
consensus_3951#2 -------TTATTAAAAAGGAACAACTTTTGTCATACTACAATGAAGACGCGCTCGTACGT 53
consensus_3951#0 ------------------------------------------------------------
consensus_3951#1 GCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACCGANCG 120
consensus_3951#2 GCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACC-ACCG 112
consensus_3951#0 ------------------------------------------------------------
consensus_3951#1 ATCATCATTCGTCATTGTGCTGCAAG--CAGTGTCTCGTTTGTGAGACCACTTGCAAACT 178
consensus_3951#2 ATCATCATTCGTCATTGTGCTGCAAG--CAGTGTCTCGTTTGTGAGACCACTTGCAAACT 170
consensus_3951#0 ----------AGCAGAATCCCGCNGGTTNAATGTCTCGTTTGTGAGAC-ACTTGCAA-CT 48
** * * ** * * ***************** ******** **
consensus_3951#1 GGTCG-ACTGTCCGGTGGAACCCGACACGGAATGCAATTGCC-GG-ATGGGTTCACCTTC 235
consensus_3951#2 GGTCG-ACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGG-ATGGGTTCACCTTC 228
consensus_3951#0 GGTCNTACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGGCATGGGTTCACCTTC 108
**** ************************************ ** **************
consensus_3951#1 AATGGGAAGGCGTGCATGCAGGACTANTCGAGCAAAATTCGTGTGCAACCCCCTTTGCGA 295
consensus_3951#2 AATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCC-TTTGCGA 287
consensus_3951#0 AATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCC-TTTGCGA 167
************************** ************************* *******
consensus_3951#1 GTGTAGGGAAACATTGTTAGGGAACTGTTCGTTCTGTTTGGGTGTCGTGTGTTAGGTGTG 355
consensus_3951#2 GTGTAGG-AAACATTGTTAGGAA--TGTTCGTT-TGTTTGG-TGTCGTGTGTTAG-TGTG 341
consensus_3951#0 GTGTAGG-AAACATTGTTAGGAATGTAT-CGTT-TGTTATGGTGTCGTGTGTTAG-TGTG 223
******* ************* * * * **** **** * ************* ****
consensus_3951#1 GTGAAAACCATTTCCTTTCCTGAAATCATACCAAGGTATGGGCCACAGTGGTATAAAACT 415
consensus_3951#2 TTGAAA--CATT-CCTTTCCTGAA-TCATAC--AGTTG---------GCAGTGTATAAAC 386
consensus_3951#0 TTGAAA--CATT-CCTTTCCTGAA-TCATAC---AGTATGG----CAGCTGTATAAA--C 270
***** **** *********** ****** * * ** ** *
consensus_3951#1 TGGTTGGCCTCGGGCAAAATTAACATAAATCAACATTGAACCATTAGGTGGAACATTACA 475
consensus_3951#2 TTGTTG--CTGGAAATAAATAATCACA---TGACATAGTGACATACAGTG---------- 431
consensus_3951#0 TTGTTG--CTGGAACATANCATAATCACATGCACATAGTGACATACAGTG---------- 318
* **** ** * * * **** * *** ***
consensus_3951#1 AGTGGTGCATTGGGTCTTGCGACAAANTCGATCGGTTGTATCTTAAAAAATGGCCTTAAA 535
consensus_3951#2 -----TGCATGG----TTGC-----AAATGATCG-TTGTTTTT---AAAATG--CTTAAC 471
consensus_3951#0 -----TGCATGG----TTGCAAC---ATGCATCGCTTGTNNTTTCTCAACACTGCTTAAC 366
***** * **** **** **** * ** *****
consensus_3951#1 CTTTTTATACCACAGGCTTAACCTCAAAAACATTGGTTCCCCGNCGAAAAAACCTTCGTT 595
consensus_3951#2 TTTT-------ACAAGCT--ACCTCAAA--CATTGTTCC----GCGAAAA-----CTGTT 511
consensus_3951#0 TTTN-------ACAAGCT--ANCTCAAA--CATTGTTACCCGCGCAAACA-----CTGTT 410
** *** *** * ****** ***** * * * ** * ***
consensus_3951#1 TCCAACCACACATAAAGGGGCTTACCGAANGCCACGTGCAANCCCGAAACAAAACGACAG 655
consensus_3951#2 TCAAA--------AATAAGGCT-----ACGAGCACGTGCAGCC--------GAACAACGA 550
consensus_3951#0 TCACA------AACATAAGGCT-----ACGAGCACGTGCAGCG-----AACAAACGGCAC 454
** * * **** * ******** *** *
consensus_3951#1 GGGCCGCTTATTACACACAAGGGGTTGTCGCNTTTACCAACCTTTTACCCACGTTTCCCT 715
consensus_3951#2 CGGGCGCT--------ATAAAAGGGTGT-GCTTTCACTTAC---------ACGTTCCTGT 592
consensus_3951#0 GGGGCGCT------ATACANAGGGGTGTAGCTTTCACTTAC---------ACGTTCCTGT 499
** **** * * ** *** ** ** ** ** ***** * *
consensus_3951#1 GTACAAG-GTTAACCGCTAAGGANCAGGGGTTCCGTTCAACATGAATAAACTTGCAATTG 774
consensus_3951#2 AAGTAAC-GCTAG----------ACAGGGGT--CGTTCAACATGAATAA-CTTGCA--TG 636
consensus_3951#0 AAGTAACTGCTAG----------ACAGGGGTCGTATCAACATTGCATAAACTTGCA-TNG 548
** * ** ******* * * ** **** ****** *
consensus_3951#1 TAACGAGTTGTCNTCTGCTGAGTCGGTTGTTCAAGATTATGGGGACCCACAGTCTCTCCC 834
consensus_3951#2 TAGT------TTTTCTGCTG-GTCG--TGTT---AGTTATGGGA--CCACAG-CTCTCC- 680
consensus_3951#0 TAAGA-----NATACTGCTG-GTCA--CGGTACANCNNATAGGGA-CCACAGTTCTCCTC 599
** ****** *** * * ** ** ****** *
consensus_3951#1 TCAAGAGGGTTGCTTCCCGTTC-GGCCAAGCTACAGATCGAAACA--------------- 878
consensus_3951#2 TCAGG------------------------------------------------------- 685
consensus_3951#0 AGGAGNGTATAGNNAACCGTCGAGGCCACNGCNCGTACCGTCNCAAAACCAGTTTCTACT 659
*
consensus_3951#1 ------------------------------------------------------------
consensus_3951#2 ------------------------------------------------------------
consensus_3951#0 TACAGCTTANCTAACGCTGGTAATTCGCGNGGAACNCCATTGACTTTGCCAAACTAGGAC 719
consensus_3951#1 ------------------------------------------------------------
consensus_3951#2 ------------------------------------------------------------
consensus_3951#0 GCGAACTCTAAAAAACACGTAATGATTGCATNTGGTGANCANACANCGACTGTCAAGCAT 779
consensus_3951#1 ------------------------------------------------------------
consensus_3951#2 ------------------------------------------------------------
consensus_3951#0 CACTTGCTGGGATTACCGGACTACCCAGCACACGGCANGNTCAAGNCACTGTNTTAAAAA 839
consensus_3951#1 ------------------------------------------------------------
consensus_3951#2 ------------------------------------------------------------
consensus_3951#0 ATCCCCACGGNNTCAACAAGCGTTTAACAACCCNTCTACCACACATCATACCACCGGGGA 899
consensus_3951#1 ------------------------------
consensus_3951#2 ------------------------------
consensus_3951#0 GACTAACACAGCGACAAGGATTATGAACAA 929
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||