cluster # 3977

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Anopheles gambiae
cluster # 3977 cluster # 3977 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3977#0 length = 767 sequences # 2

consensus_3977#1 length = 259 sequences # 1

consensusID : consensus_3977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 767
fasta sequence

                              [CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCATCACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCACCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCAGCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGAACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCTGGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAAGCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAACGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAAGGAGGCGTCCCCGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGAACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCCCCAAGCTGAAGGACAAATCCAAGACGAAGGAAAGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACCACGCCCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG]

[+] EMBL BM653009             [CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCATCACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCACCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCAGCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGAACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCTGGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAAGCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAACGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAA                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM633527             [                                                                                                                                                                                                                                        ccgGGCGAACTGGCCGACCCGCCGCCGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCTGGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAAGCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAACGGGCGC AAAAAACCGACGGCGCCGGACGGCGCTGG   TGGCAGCAAGGAGGCGTCCCCGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGAACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCCCCAAGCTGAAGGACAAATCCAAGACGAAGGAAAGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACCACGCCCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG]




>consensus_3977#0
CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCAT
CACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCA
CCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCA
GCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGA
ACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCT
GGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAA
GCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAA
CGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAAGGAGGCGTCCC
CGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGA
ACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCC
CCAAGCTGAAGGACAAATCCAAGACGAAGGAAAGCTCTCCCTACGGTGCCCGGTGTGCCT
CCGACGACTGCCTTAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACCACGC
CCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG

consensusID : consensus_3977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [AAGATCGCCNGAGGTCAAGTCATGCTTTGATATGAGAAGCATTAGTTGTGGTACGAAGGAAAGGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAAAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACAACGCCCGATGCTGCCGGCCCGAACATCATCACCACAACAGTACACGCCGATCGGGCGCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCCTCCGCTTGCCCCTCAACTA]

[+] EMBL AL697063             [AAGATCGCCNGAGGTCAAGTCATGCTTTGATATGAGAAGCATTAGTTGTGGTACGAAGGAAAGGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAAAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACAACGCCCGATGCTGCCGGCCCGAACATCATCACCACAACAGTACACGCCGATCGGGCGCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCCTCCGCTTGCCCCTCAACTA]




>consensus_3977#1
AAGATCGCCNGAGGTCAAGTCATGCTTTGATATGAGAAGCATTAGTTGTGGTACGAAGGA
AAGGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAAAACACGAACGGAGC
GGCGGCGACGGGTTCGCCCACCACCACAACGCCCGATGCTGCCGGCCCGAACATCATCAC
CACAACAGTACACGCCGATCGGGCGCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCC
TCCGCTTGCCCCTCAACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3977#0      CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCAT 60
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      CACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCA 120
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      CCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCA 180
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      GCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGA 240
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      ACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCT 300
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      GGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAA 360
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      GCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAA 420
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      CGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAAGGAGGCGTCCC 480
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      CGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGA 540
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      ACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCC 600
consensus_3977#1      ----------------------------------AAGATCGCCNGAGGTCAAGTCATGCT 26
                                                          * *       * ****    * * 

consensus_3977#0      CCAAGCTGAAGGACA---AATCCAAGACGAAGGAAAG-CTCTCCCTACGGTGCCCGGTGT 656
consensus_3977#1      TTGATATGAGAAGCATTAGTTGTGGTACGAAGGAAAGGCTCTCCCTACGGTGCCCGGTGT 86
                         *  ***    **     *     *********** **********************

consensus_3977#0      GCCTCCGACGACTGCCTTAA--CACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCA 714
consensus_3977#1      GCCTCCGACGACTGCCTTAAAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCA 146
                      ********************  **************************************

consensus_3977#0      CCACGCCCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG------- 767
consensus_3977#1      CAACGCCCGATGCTGCCGGCCCGAAC-ATCATCACCACAACAG-TACACGCCGATCGGGC 204
                      * ************************ **************** *********       

consensus_3977#0      -------------------------------------------------------
consensus_3977#1      GCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCCTCCGCTTGCCCCTCAACTA 259