cluster # 3980

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3980 cluster # 3980 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3980#0 length = 735 sequences # 1

consensus_3980#1 length = 399 sequences # 1
consensus_3980#2 length = 349 sequences # 1

consensusID : consensus_3980#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 735
fasta sequence

                              [CCGCGGCTGGTGACATGTCCGGCCCCGTGCCGATGGATACGTCCGAAGAGGGCAGTGGGATGGGAGCGGACAGTCCTTCCTCGTCCCCGGAAAAGAAAGGCGATGACGTTTCGAGTGCTTCGGAGTACTTCGATCCAAAGGAACGGTCAAAGGAGCGCAAAAGACGGTCGAGATGAACCGCACGGACGACAAGCGCAGCAACGCGATGGCAATGCTGAAGGCGAAGCGCGAGGGCAAGGCGAAACGGGAGGAGGAGGAAGCGAAGCGCGAGGCACAGCGAAAGCAGGACGCCAGCCAGCAGGAGGACAAGGAGGAGCTGGCCGACGTGCCCGGCGGCAAGTCGCAGATGAAGCTCAAGGCGTCCGACATCTATTCCGACGATTCGGGCAGCTCGGAGAGCGTCCAGTGTGTCAGTGGGCTTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCATTCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCGAGCGTTCATCTTTACTGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACACGCATACACGCACACACCTTAGCAAACACATACAGTCACAGGCAGCACAGCAACAACAAAGATGGTGAAACGCAAACCACAGGCTATGATCGATTCGGAAAGCAGCAGTGATTCGGATTCCCGGTTCCGATCTCGATT]

[+] EMBL BM621855             [CCGCGGCTGGTGACATGTCCGGCCCCGTGCCGATGGATACGTCCGAAGAGGGCAGTGGGATGGGAGCGGACAGTCCTTCCTCGTCCCCGGAAAAGAAAGGCGATGACGTTTCGAGTGCTTCGGAGTACTTCGATCCAAAGGAACGGTCAAAGGAGCGCAAAAGACGGTCGAGATGAACCGCACGGACGACAAGCGCAGCAACGCGATGGCAATGCTGAAGGCGAAGCGCGAGGGCAAGGCGAAACGGGAGGAGGAGGAAGCGAAGCGCGAGGCACAGCGAAAGCAGGACGCCAGCCAGCAGGAGGACAAGGAGGAGCTGGCCGACGTGCCCGGCGGCAAGTCGCAGATGAAGCTCAAGGCGTCCGACATCTATTCCGACGATTCGGGCAGCTCGGAGAGCGTCCAGTGTGTCAGTGGGCTTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCATTCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCGAGCGTTCATCTTTACTGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACACGCATACACGCACACACCTTAGCAAACACATACAGTCACAGGCAGCACAGCAACAACAAAGATGGTGAAACGCAAACCACAGGCTATGATCGATTCGGAAAGCAGCAGTGATTCGGATTCCCGGTTCCGATCTCGATT]




>consensus_3980#0
CCGCGGCTGGTGACATGTCCGGCCCCGTGCCGATGGATACGTCCGAAGAGGGCAGTGGGA
TGGGAGCGGACAGTCCTTCCTCGTCCCCGGAAAAGAAAGGCGATGACGTTTCGAGTGCTT
CGGAGTACTTCGATCCAAAGGAACGGTCAAAGGAGCGCAAAAGACGGTCGAGATGAACCG
CACGGACGACAAGCGCAGCAACGCGATGGCAATGCTGAAGGCGAAGCGCGAGGGCAAGGC
GAAACGGGAGGAGGAGGAAGCGAAGCGCGAGGCACAGCGAAAGCAGGACGCCAGCCAGCA
GGAGGACAAGGAGGAGCTGGCCGACGTGCCCGGCGGCAAGTCGCAGATGAAGCTCAAGGC
GTCCGACATCTATTCCGACGATTCGGGCAGCTCGGAGAGCGTCCAGTGTGTCAGTGGGCT
TGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCATT
CCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTT
TCCGAGCGTTCATCTTTACTGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACACGC
ATACACGCACACACCTTAGCAAACACATACAGTCACAGGCAGCACAGCAACAACAAAGAT
GGTGAAACGCAAACCACAGGCTATGATCGATTCGGAAAGCAGCAGTGATTCGGATTCCCG
GTTCCGATCTCGATT

consensusID : consensus_3980#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [GGCCGGGCTGGGGCTTGGCAAGAGCGAATCGCGTAACCATCACAGCAACGCCAGCAATTTTAGCCGGAAAGTGATCAACCCGCAACGGACAGAAAGCTTCCGTGCTGGGGGCAGGTAAATTGTTGACCGTCGGACCGTCTAGAACACCGGATAAAAGCGGTCCCAGCTGCCGCATTCCCCCCGTAACCATCACCGCCGTCGGAGAGCGTCCAGTGTGTCAGTGGGCTTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCATTCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCGAGCGTTCATCTTTACTGCTGAAATTCAAGAATCACAGCTCTTGCACGC]

[+] EMBL BX602708             [GGCCGGGCTGGGGCTTGGCAAGAGCGAATCGCGTAACCATCACAGCAACGCCAGCAATTTTAGCCGGAAAGTGATCAACCCGCAACGGACAGAAAGCTTCCGTGCTGGGGGCAGGTAAATTGTTGACCGTCGGACCGTCTAGAACACCGGATAAAAGCGGTCCCAGCTGCCGCATTCCCCCCGTAACCATCACCGCCGTCGGAGAGCGTCCAGTGTGTCAGTGGGCTTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCATTCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCGAGCGTTCATCTTTACTGCTGAAATTCAAGAATCACAGCTCTTGCACGC]




>consensus_3980#1
GGCCGGGCTGGGGCTTGGCAAGAGCGAATCGCGTAACCATCACAGCAACGCCAGCAATTT
TAGCCGGAAAGTGATCAACCCGCAACGGACAGAAAGCTTCCGTGCTGGGGGCAGGTAAAT
TGTTGACCGTCGGACCGTCTAGAACACCGGATAAAAGCGGTCCCAGCTGCCGCATTCCCC
CCGTAACCATCACCGCCGTCGGAGAGCGTCCAGTGTGTCAGTGGGCTTGCAAGGGAAGTA
GCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCATTCCGTTCGTTGAAA
GGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCGAGCGTTCAT
CTTTACTGCTGAAATTCAAGAATCACAGCTCTTGCACGC

consensusID : consensus_3980#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [AGCAGATTCGCCCGANGGANANCGTTCGTTGAAGGTCACACGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCCGAGCGTTCATCTTTACTGGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACACGCATACACGCACACACCTTAGCAAACACATACAGCTCACAGGCAGCACAGCAAACAACAAAGATGGTGAAAACGCAAAACCACAGGCTATGATCCGATTCGGAAAGCAGCAGTGATTTCGGGATTCCGGGTTTCCGATCTCGGATTCGGGAACTGCTTTTCATTTGGCCAAGAAAGGAAGAAGACCAAACCCGTTTGGGCGTCCGGCTCG]

[+] EMBL AL697155             [AGCAGATTCGCCCGANGGANANCGTTCGTTGAAGGTCACACGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCCGAGCGTTCATCTTTACTGGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACACGCATACACGCACACACCTTAGCAAACACATACAGCTCACAGGCAGCACAGCAAACAACAAAGATGGTGAAAACGCAAAACCACAGGCTATGATCCGATTCGGAAAGCAGCAGTGATTTCGGGATTCCGGGTTTCCGATCTCGGATTCGGGAACTGCTTTTCATTTGGCCAAGAAAGGAAGAAGACCAAACCCGTTTGGGCGTCCGGCTCG]




>consensus_3980#2
AGCAGATTCGCCCGANGGANANCGTTCGTTGAAGGTCACACGAATTGCGAATCAGAGAAA
AAGCGGACCGCAGCAGTTTTCCCGAGCGTTCATCTTTACTGGCTGAAATTAAAGAATCAC
AGCTCTTGCACGCACACACGCATACACGCACACACCTTAGCAAACACATACAGCTCACAG
GCAGCACAGCAAACAACAAAGATGGTGAAAACGCAAAACCACAGGCTATGATCCGATTCG
GAAAGCAGCAGTGATTTCGGGATTCCGGGTTTCCGATCTCGGATTCGGGAACTGCTTTTC
ATTTGGCCAAGAAAGGAAGAAGACCAAACCCGTTTGGGCGTCCGGCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3980#0      CCGCGGCTGGTGACATGTCCGGCCCCGTGCCGATGGATACGTCCGAAGAGGGCAGTGGGA 60
consensus_3980#2      ------------------------------------------------------------
consensus_3980#1      ------------------------------------------------------------
                                                                                  

consensus_3980#0      TGGGAGCGGACAGTCCTTCCTCGTCCCCGGAAAAGAAAGGCGATGACGTTTCGAGTGCTT 120
consensus_3980#2      ------------------------------------------------------------
consensus_3980#1      ------------------------------------------------------------
                                                                                  

consensus_3980#0      CGGAGTACTTCGATCCAAAGGAACGGTCAAAGGAGCGCAAAAGACGGTCGAGATGAACCG 180
consensus_3980#2      ------------------------------------------------------------
consensus_3980#1      ------------------------------------------------------------
                                                                                  

consensus_3980#0      CACGGACGACAAGCGCAGCAACGCGATGGCAATGCTGAAGGCGAAGCGCGAGGGCAAGGC 240
consensus_3980#2      ------------------------------------------------------------
consensus_3980#1      --------------GGCCGGGCTGGGGCTTGGCAAGAGCGAATCGCGTAACCATCACAGC 46
                                                                                  

consensus_3980#0      GAAACGGGAGGAGGAGGAAGCGAAGCGCGAGGCACAGCGAAAGCAGGACGCCAGCCAGCA 300
consensus_3980#2      ------------------------------------------------------------
consensus_3980#1      AACGCCAGCAATTTTAGCCGGAAAGTGATCAACCCGCAACGGACAGAAAGCTTCCGTGCT 106
                                                                                  

consensus_3980#0      GGAGGACAAGGAGGAGCTGGCCGACGTGCCCGGCGGCAAGTCGCAGATGAA-GCTCAAGG 359
consensus_3980#2      ------------------------------------------------------------
consensus_3980#1      GGGGGCAGGTAAATTGTTGACCGTCGGACCGTCTAGAACACCGGATAAAAGCGGTCCCAG 166
                                                                                  

consensus_3980#0      CGTCCGACATCTATTCCGACGATTCGGGCAGCTCGGAGAGCGTCCAGTGTGTCAGTGGGC 419
consensus_3980#2      ------------------------------------------------------------
consensus_3980#1      CTGCCGCATTCCCCCCGTAACCATCACCGCCGTCGGAGAGCGTCCAGTGTGTCAGTGGGC 226
                                                                                  

consensus_3980#0      TTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCAT 479
consensus_3980#2      -------------------------------------AGCAGATTCGCCCG---ANGGAN 20
consensus_3980#1      TTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCAT 286
                                                           ***     ***  *     * * 

consensus_3980#0      TCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTT 539
consensus_3980#2      ANCGTTCGTTGAA-GGTCACAC-GAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTT 78
consensus_3980#1      TCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTT 346
                        *********** ******** *************************************

consensus_3980#0      TTCC-GAGCGTTCATCTTTACTG-CTGAAATTAAAGAATCACAGCTCTTGCACGCACACA 597
consensus_3980#2      TTCCCGAGCGTTCATCTTTACTGGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACA 138
consensus_3980#1      TTCC-GAGCGTTCATCTTTACTG-CTGAAATTCAAGAATCACAGCTCTTGCACGC----- 399
                      **** ****************** ******** **********************     

consensus_3980#0      CGCATACACGCACACACCTTAGCAAACACATACAG-TCACAGGCAGCACAGCAA-CAACA 655
consensus_3980#2      CGCATACACGCACACACCTTAGCAAACACATACAGCTCACAGGCAGCACAGCAAACAACA 198
consensus_3980#1      ------------------------------------------------------------
                                                                                  

consensus_3980#0      AAGATGGTGAAA-CGCAAA-CCACAGGCTATGATC-GATTCGGAAAGCAGCAGTGATTC- 711
consensus_3980#2      AAGATGGTGAAAACGCAAAACCACAGGCTATGATCCGATTCGGAAAGCAGCAGTGATTTC 258
consensus_3980#1      ------------------------------------------------------------
                                                                                  

consensus_3980#0      -GGATTCCCGGTT-CCGATCTCGATT---------------------------------- 735
consensus_3980#2      GGGATTCCGGGTTTCCGATCTCGGATTCGGGAACTGCTTTTCATTTGGCCAAGAAAGGAA 318
consensus_3980#1      ------------------------------------------------------------
                                                                                  

consensus_3980#0      -------------------------------
consensus_3980#2      GAAGACCAAACCCGTTTGGGCGTCCGGCTCG 349
consensus_3980#1      -------------------------------