cluster # 3984

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Anopheles gambiae
cluster # 3984 cluster # 3984 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3984#0 length = 708 sequences # 2

consensus_3984#1 length = 390 sequences # 1

consensusID : consensus_3984#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 708
fasta sequence

                              [CCGGACCAAACCCCGCGTGTGCACATTATCCCAGGTCAGTCAGAAGAAACCGGTCAGTATTGGTGGAAATTTGCATAGAACCAATCATGTACCACAACACTCCGAGGCACACTCGAACGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACGAAGAACGCCGGGCAGAATTTAAGAACGCCTCGTCTATATCGCGCAGATCGGTTCCTCCCGTTCCACGGGCAGTGTTGTAGAGTTGTAGATGAACGGAATTGCCGTCCCGTAAGAGCCTGGTTCCGGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCAACAGAAGGGGCCAGGCGAAAAAAAAGAGAGAGAAAGTAACAACGTCCAACCGTGTGCCGGAGATTGGCTTCAACGGGCACGGAAGCCGCCGTTCCAGCCGCCGTAAGCGGGGACGGTGGGGCCCTTTTGCAAACCGTAGGAAATTGTTTGTTTAATTAAATTTTGCACCAGGAAATAGCACGACTTTTAGCAAACATACAACAAAAAAACCAAGGAAATGGCATCAACATTCCGCTGTCCGTTCTCGCTGGTTCTCTGGTTTCAACGCAGAAGCACATCGTCACGCAGTAGATAGCACGAGGTGGTGTGGTGTTTCGCTGAATCTTGATAGTGTAAATGTGATTTTAATTTCGAAAGGAACAGGCTAGTACAAG]

[+] EMBL BM584484             [CCGGACCAAACCCCGCGTGTGCACATTATCCCAGGTCAGTCAGAAGAAACCGGTCAGTATTGGTGGAAATTTGCATAGAACCAATCATGTACCACAACACTCCGAGGCACACTCGAACGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACGAAGAACGCCGGGCAGAATTTAAGAACGCCTCGTCTATATCGCGCAGATCGGTTCCTCCCGTTCCACGGGCAGTGTTGTAGAGTTGTAGATGAACGGAATTGCCGTCCCGTAAGAGCCTGGTTCCGGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCAACAGAAGGGGCCAGGCGAAAAAAAAGAGAGAGAAAGTAACAACGTCCAACCGTGTGCCGGAGATTGGCTTCAACGGGCACGGAAGCCGCCGTTCCAGCCGCCGTAAGCGGGGACGGTGGGGCCCTT                                                                                                                                                                                                                                                        ]
[+] EMBL BX622556             [                              CCAGGTCAGTCAGAAGAAACCGGTCAGTATTGGTGGAAATTTGCATAGAACCAATCATGTACCACAACACTCCGAGGCACACTCGAACGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACGAAGAACGCCGGGCAGAATTTAAGAACGCCTCGTCTATATCGCGCAGATCGGTTCCTCCCGTTCCACGGGCAGTGTTGTAGAGTTGTAGATGAACGGAATTGCCGTCCCGTAAGAGCCTGGTTCCGGTCGGCGAGAGTCGCGNTGCTGGTGACGCACGACGCAACAGAAGGGGCCAGGCGAAAAAAAAGAGAGAGAAAGTAACAACGTCCAACCGTGTGCCGGAGATTGGCTTCAACGGGCACGGAAGCCGCCGTTCCAGCCGCCGTAAGC GGGACGGTGGGGCCCTTTTGCAAACCGTAGGAAATTGTTTGTTTAATTAAATTTTGCACCAGGAAATAGCACGACTTTTAGCAAACATACAACAAAAAAACCAAGGAAATGGCATCAACATTCCGCTGTCCGTTCTCGCTGGTTCTCTGGTTTCAACGCAGAAGCACATCGTCACGCAGTAGATAGCACGAGGTGGTGTGGTGTTTCGCTGAATCTTGATAGTGTAAATGTGATTTTAATTTCGAAAGGAACAGGCTAGTACAAG]




>consensus_3984#0
CCGGACCAAACCCCGCGTGTGCACATTATCCCAGGTCAGTCAGAAGAAACCGGTCAGTAT
TGGTGGAAATTTGCATAGAACCAATCATGTACCACAACACTCCGAGGCACACTCGAACGG
TACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACGAAGAACGC
CGGGCAGAATTTAAGAACGCCTCGTCTATATCGCGCAGATCGGTTCCTCCCGTTCCACGG
GCAGTGTTGTAGAGTTGTAGATGAACGGAATTGCCGTCCCGTAAGAGCCTGGTTCCGGTC
GGCGAGAGTCGCGTTGCTGGTGACGCACGACGCAACAGAAGGGGCCAGGCGAAAAAAAAG
AGAGAGAAAGTAACAACGTCCAACCGTGTGCCGGAGATTGGCTTCAACGGGCACGGAAGC
CGCCGTTCCAGCCGCCGTAAGCGGGGACGGTGGGGCCCTTTTGCAAACCGTAGGAAATTG
TTTGTTTAATTAAATTTTGCACCAGGAAATAGCACGACTTTTAGCAAACATACAACAAAA
AAACCAAGGAAATGGCATCAACATTCCGCTGTCCGTTCTCGCTGGTTCTCTGGTTTCAAC
GCAGAAGCACATCGTCACGCAGTAGATAGCACGAGGTGGTGTGGTGTTTCGCTGAATCTT
GATAGTGTAAATGTGATTTTAATTTCGAAAGGAACAGGCTAGTACAAG

consensusID : consensus_3984#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [CCAATCATGTACCACAACACTCCGNAGGCACACTCNGTAACGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACAGAAGAACGCCGGGCAGAATNTTAAGAACGCCCCGTCTATATCTGCGTAGATCGGTTCCTCCCGTNTCCACGGGCAGTGTTGTANGAGNTTGTATGATGAACGGAATTGCCGTCCNCGTAAGAGCCTGGTTCCAGGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCANACAGAAGGGGCCAGACAAAAAAAAGAGAGAAAGTAACAATCGTGCTCAACTCGTGTGCCGGAGATGTGGCTTCAACGGGCACGGAAGCCGCGCGGTGGGGCCCCTTATGTCANAACCTGTAGG]

[+] EMBL BX619415             [CCAATCATGTACCACAACACTCCGNAGGCACACTCNGTAACGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACAGAAGAACGCCGGGCAGAATNTTAAGAACGCCCCGTCTATATCTGCGTAGATCGGTTCCTCCCGTNTCCACGGGCAGTGTTGTANGAGNTTGTATGATGAACGGAATTGCCGTCCNCGTAAGAGCCTGGTTCCAGGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCANACAGAAGGGGCCAGACAAAAAAAAGAGAGAAAGTAACAATCGTGCTCAACTCGTGTGCCGGAGATGTGGCTTCAACGGGCACGGAAGCCGCGCGGTGGGGCCCCTTATGTCANAACCTGTAGG]




>consensus_3984#1
CCAATCATGTACCACAACACTCCGNAGGCACACTCNGTAACGGTACCGACACTGTCCAGG
GCAGGGCGAAACAGCGGAAAAGAAACGAGCACACAGAAGAACGCCGGGCAGAATNTTAAG
AACGCCCCGTCTATATCTGCGTAGATCGGTTCCTCCCGTNTCCACGGGCAGTGTTGTANG
AGNTTGTATGATGAACGGAATTGCCGTCCNCGTAAGAGCCTGGTTCCAGGTCGGCGAGAG
TCGCGTTGCTGGTGACGCACGACGCANACAGAAGGGGCCAGACAAAAAAAAGAGAGAAAG
TAACAATCGTGCTCAACTCGTGTGCCGGAGATGTGGCTTCAACGGGCACGGAAGCCGCGC
GGTGGGGCCCCTTATGTCANAACCTGTAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3984#0      CCGGACCAAACCCCGCGTGTGCACATTATCCCAGGTCAGTCAGAAGAAACCGGTCAGTAT 60
consensus_3984#1      ------------------------------------------------------------
                                                                                  

consensus_3984#0      TGGTGGAAATTTGCATAGAACCAATCATGTACCACAACACTCCGA-GGCACACTCG--AA 117
consensus_3984#1      --------------------CCAATCATGTACCACAACACTCCGNAGGCACACTCNGTAA 40
                                          ************************  *********   **

consensus_3984#0      CGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACAC-GAAGA 176
consensus_3984#1      CGGTACCGACACTGTCCAGGGCAGGGCGAAACAGCGGAAAAGAAACGAGCACACAGAAGA 100
                      ****************************************************** *****

consensus_3984#0      ACGCCGGGCAGAATTT-AAGAACGCCTCGTCTATATC-GCGCAGATCGGTTCCTCCCGTT 234
consensus_3984#1      ACGCCGGGCAGAATNTTAAGAACGCCCCGTCTATATCTGCGTAGATCGGTTCCTCCCGTN 160
                      ************** * ********* ********** *** ***************** 

consensus_3984#0      -CCACGGGCAGTGTTGTAGA--GTTGTA-GATGAACGGAATTGCCGTCCC-GTAAGAGCC 289
consensus_3984#1      TCCACGGGCAGTGTTGTANGAGNTTGTATGATGAACGGAATTGCCGTCCNCGTAAGAGCC 220
                       *****************     ***** ********************  *********

consensus_3984#0      TGGTTCC-GGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCAA-CAGAAGGGGCCA 347
consensus_3984#1      TGGTTCCAGGTCGGCGAGAGTCGCGTTGCTGGTGACGCACGACGCANACAGAAGGGGCCA 280
                      ******* **************************************  ************

consensus_3984#0      GGCGAAAAAAAAGAGAGAGAAAGTAACAACGTCCAAC-CGTGTGCCGGAGAT-TGGCTTC 405
consensus_3984#1      GACAAAAAAAAGAGAGAAAGTAACAATCGTGCTCAACTCGTGTGCCGGAGATGTGGCTTC 340
                      * * *******      *   *  **    *  **** ************** *******

consensus_3984#0      AACGGGCACGGAAGCCGC-CGTTCCAGCCGCCGTAAGCGGGGACGGTGGGGCCCTTTTGC 464
consensus_3984#1      AACGGGCACGGAAGCCGCGCGGTGGGGCCCCTTATGTCANAACCTGTAGG---------- 390
                      ****************** ** *   *** *      *     * ** **          

consensus_3984#0      AAACCGTAGGAAATTGTTTGTTTAATTAAATTTTGCACCAGGAAATAGCACGACTTTTAG 524
consensus_3984#1      ------------------------------------------------------------
                                                                                  

consensus_3984#0      CAAACATACAACAAAAAAACCAAGGAAATGGCATCAACATTCCGCTGTCCGTTCTCGCTG 584
consensus_3984#1      ------------------------------------------------------------
                                                                                  

consensus_3984#0      GTTCTCTGGTTTCAACGCAGAAGCACATCGTCACGCAGTAGATAGCACGAGGTGGTGTGG 644
consensus_3984#1      ------------------------------------------------------------
                                                                                  

consensus_3984#0      TGTTTCGCTGAATCTTGATAGTGTAAATGTGATTTTAATTTCGAAAGGAACAGGCTAGTA 704
consensus_3984#1      ------------------------------------------------------------
                                                                                  

consensus_3984#0      CAAG 708
consensus_3984#1      ----