cluster # 3985

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Anopheles gambiae
cluster # 3985 cluster # 3985 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3985#0 length = 610 sequences # 2

consensus_3985#1 length = 129 sequences # 1

consensusID : consensus_3985#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 610
fasta sequence

                              [GGCTTCTGGCTGCTGGGCGAGGATGAGCTGGCCGAGGCCCTGTACGGCCAGGTGGAAACGCTGCCGGCCGCCATGCAGCAGCTGGAGGATCCGCTTGCCCGCGCGCTGCTGCTCGCGTTCCACGCCAAGCGCGGCTTGATCACCAAGACGGAATCGAGCTTTGAGACGATCTTTGGCCACTGTAATGCAAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCAACATCTGCAAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGACTGGCTCCTGGAAGCCCGAACGGCCCTCTGGGAGATCGAAAAGGATATGCGCTACAACCAGCAGCTGCACCAAACGGTGCCGGGGCAAATTTTGGCCGCCTTCCAGGCCGACCTGAACCTGCTCCGCATGGTGACGAGCAAATTCCCGAATGCCCAGTCGCGCGTGTTTCTGTACGAGGCGGTCTGCCGGCTGATGGCGGGTGCGGCGCCCGGTCCGACCCAGCAGCTGCTGGACCGCAGCCTGCGCCAGCGCAACTCCCGCTCGTCGCTCATCTGCGGCAAGGACCGGTCGGCCCAGCTGGCCGGTGGGCGGGAGCGGGCCGCCGCCCTGT]

[+] EMBL BX602717             [GGCTTCTGGCTGCTGGGCGAGGATGAGCTGGCCGAGGCCCTGTACGGCCAGGTGGAAACGCTGCCGGCCGCCATGCAGCAGCTGGAGGATCCGCTTGCCCGCGCGCTGCTGCTCGCGTTCCACGCCAAGCGCGGCTTGATCACCAAGACGGAATCGAGCTTTGAGACGATCTTTGGCCACTGTAATGCAAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCAACATCTGCAAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGACTGGCTCCTGGAAGCCCGAACGGCCCTCTGGGAGATCGAAAAGGATATGCGCTACAACCAGCAGCTGCACCAAACGGTGCCGGGGCAAATTTTGGCCGCCTTCCAGGCCGACCTGAACCTGCTCCGCATGGTGACGAGCAAATTCCCGAATGCCCAGTCGCGCGTGTTTCTGTACGAGGCGGTCTGCCGGCTGATGGCGGGTGCGGCGCCCGGTCCGACCCAGCAGCTGCTGGACCGCAGCCTGCGCCAGCGCAACTCCCGCTCGTCGCTCATCTGCGGCAAGGACCGGTCGGCCCAGCTGGCCGGTGGGCGGGAGCGGGCCGCCGCCCTGT]
[+] EMBL BX610752             [                                                             TGCCGGCCGCCATGCAGCAGCTGGAGGATCCGCTTGCCCGCGCGCTGCTGCTCGCGTTCCACGCCAAGCGCGGCTTGATCACCAAGACGGAATCGAGCTTTGAGACGATCTTTGGCCACTGTAATGCAAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCAACATCTGCAAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGACTGGCTCCTGGAAGCCCGAACGGCCCTCTGGGAGATTGAAAAGGATATGCGCTACAACCAGCAGCTGCACCAAACGGTGCCGGGGCAAATTTTGGCCGCCTTCCAAGCCGACCTGAACCTGCTCCGCATGGTGACGAGCAAATTCCCGAATGCCCAGTCGCG                                                                                                                                                                          ]




>consensus_3985#0
GGCTTCTGGCTGCTGGGCGAGGATGAGCTGGCCGAGGCCCTGTACGGCCAGGTGGAAACG
CTGCCGGCCGCCATGCAGCAGCTGGAGGATCCGCTTGCCCGCGCGCTGCTGCTCGCGTTC
CACGCCAAGCGCGGCTTGATCACCAAGACGGAATCGAGCTTTGAGACGATCTTTGGCCAC
TGTAATGCAAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCAACATCTGCAAGACGCCG
AGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGACTGGCTCCTGGAAGCCCGAACG
GCCCTCTGGGAGATCGAAAAGGATATGCGCTACAACCAGCAGCTGCACCAAACGGTGCCG
GGGCAAATTTTGGCCGCCTTCCAGGCCGACCTGAACCTGCTCCGCATGGTGACGAGCAAA
TTCCCGAATGCCCAGTCGCGCGTGTTTCTGTACGAGGCGGTCTGCCGGCTGATGGCGGGT
GCGGCGCCCGGTCCGACCCAGCAGCTGCTGGACCGCAGCCTGCGCCAGCGCAACTCCCGC
TCGTCGCTCATCTGCGGCAAGGACCGGTCGGCCCAGCTGGCCGGTGGGCGGGAGCGGGCC
GCCGCCCTGT

consensusID : consensus_3985#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 129
fasta sequence

                              [CGAGGCAAGATGCAGAGGGTTGACTTTGGCCACTGTAATGCAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCACATCTGCAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGAC]

[+] EMBL AL697192             [CGAGGCAAGATGCAGAGGGTTGACTTTGGCCACTGTAATGCAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCACATCTGCAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGAC]




>consensus_3985#1
CGAGGCAAGATGCAGAGGGTTGACTTTGGCCACTGTAATGCAGCAGCCGCTTCCTCGAGG
ACAGTCTTACCGGCACATCTGCAGACGCCGAGCCGGCTGAAGTTGCTATCGCAACTGCTC
GCCTGCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3985#0      GGCTTCTGGCTGCTGGGCGAGGATGAGCTGGCCGAGGCCCTGTACGGCCAGGTGGAAACG 60
consensus_3985#1      ------------------------------------------------------------
                                                                                  

consensus_3985#0      CTGCCGGCCGCCATGCAGCAGCTGGAGGATCCGCTTGCCCGCGCGCTGCTGCTCGCGTTC 120
consensus_3985#1      ------------------------------------------------------------
                                                                                  

consensus_3985#0      CACGCCAAGCGCGGCTTGATCACCAAGACGGAATCGAGCTTTGAGACGATCTTTGGCCAC 180
consensus_3985#1      -----------------------CGAGGCAAGATGCAG----AGGGTTGACTTTGGCCAC 33
                                             * ** *   **  **      *     **********

consensus_3985#0      TGTAATGCAAGCAGCCGCTTCCTCGAGGACAGTCTTACCGGCAACATCTGCAAGACGCCG 240
consensus_3985#1      TGTAATGCA-GCAGCCGCTTCCTCGAGGACAGTCTTACCGGCA-CATCTGCA-GACGCCG 90
                      ********* ********************************* ******** *******

consensus_3985#0      AGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGACTGGCTCCTGGAAGCCCGAACG 300
consensus_3985#1      AGCCGGCTGAAGTTGCTATCGCAACTGCTCGCCTGCGAC--------------------- 129
                      ***************************************                     

consensus_3985#0      GCCCTCTGGGAGATCGAAAAGGATATGCGCTACAACCAGCAGCTGCACCAAACGGTGCCG 360
consensus_3985#1      ------------------------------------------------------------
                                                                                  

consensus_3985#0      GGGCAAATTTTGGCCGCCTTCCAGGCCGACCTGAACCTGCTCCGCATGGTGACGAGCAAA 420
consensus_3985#1      ------------------------------------------------------------
                                                                                  

consensus_3985#0      TTCCCGAATGCCCAGTCGCGCGTGTTTCTGTACGAGGCGGTCTGCCGGCTGATGGCGGGT 480
consensus_3985#1      ------------------------------------------------------------
                                                                                  

consensus_3985#0      GCGGCGCCCGGTCCGACCCAGCAGCTGCTGGACCGCAGCCTGCGCCAGCGCAACTCCCGC 540
consensus_3985#1      ------------------------------------------------------------
                                                                                  

consensus_3985#0      TCGTCGCTCATCTGCGGCAAGGACCGGTCGGCCCAGCTGGCCGGTGGGCGGGAGCGGGCC 600
consensus_3985#1      ------------------------------------------------------------
                                                                                  

consensus_3985#0      GCCGCCCTGT 610
consensus_3985#1      ----------