cluster # 3986

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Anopheles gambiae
cluster # 3986 cluster # 3986 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3986#0 length = 802 sequences # 2

consensus_3986#1 length = 536 sequences # 1

consensusID : consensus_3986#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 802
fasta sequence

                              [CCGAACGCAATGAGCCAAACACAGCTCACATACAAACACAACACTCACATACAAGGTCAGGTACGGCCAGAACCCCCAGGAGCGAGCGATATACGGTGAAAATGGGTTGCTTGTTTACTCTCTAGCAGCAAAATAGCCAAATGTCCTGTTTGAGTTCCTTTTTCCTCTGTGAGTTATCAAGCAATCGAAAGAGCGAGAGCGAGAAAGGAAGACATTCTACTCTTGTTGTTTC--TTTTTTTTGGAATGGGATTGAAAATATTACATTTTTTTTAAACAATTGTTTTCAATTGTTCTACGCCGATTGTTGTTTGCTCCAACAATTCACCAACAATGGAAGTAGCGGAGTATCGAAATATGTTCCCGACTTCTTCCCCTATGCCCGATGCCCCTATTTATACGCATGCAGTGCACGAGAGTTTGTCAGTTAAAGTTTTGATTGACTGAAACCTTCAAACCGATTCCATTTAAAGCTGTGATACGAAAACTCTTCTTTGTAAGCCTCCTCCCTCCTCCACCCCAGCCAAATTGCATCCGCCGCTCGTATAAGCAGGCGGATGCTTCCAGCTCACAGGTGTTCCGTTTCCCCGTGGATGACTGGGGGGGGAGACTCATCATCAATCCTGCCCACCGGTTCCACTCACAGGACCAGTGTTTTGCTCTGGTTCAACGTTGTTTTCATCATTGTTTTTTTTTATGATTTGCTTTATTTTGTTTTTTACTCTCTGGGGTAACTTTTTTCTCTCCAAAAGTATCCCTTTCATCTCACCTGGCTTATGCTTTTGCACCCTTTTTATACTTTTGT]

[+] EMBL BM654502             [CCGAACGCAATGAGCCAAACACAGCTCACATACAAACACAACACTCACATACAAGGTCAGGTACGGCCAGAACCCCCAGGAGCGAGCGATATACGGTGAAAATGGGTTGCTTGTTTACTCTCTAGCAGCAAAATAGCCAAATGTCCTGTTTGAGTTCCTTTTTCCTCTGTGAGTTATCAAGCAATCGAAAGAGCGAGAGCGAGAAAGGAAGACATTCTACTCTTGTTGTTTC  TTTTTTTTGGAATGGGATTGAAAATATTACATTTTTTTTAAACAATTGTTTTCAATTGTTCTACGCCGATTGTTGTTTGCTCCAACAATTCACCAACAATGGAAGTAGCGGAGTATCGAAATATGTTCCCGACTTCTTCCCCTATGCCCGATGCCCCTATTTATACGCATGCAGTGCACGAGAGTTTGTCAGTTAAAGTTTTGATTGACTGAAACCTTCAAACCGATTCCATTTAAAGCTGTGATACGAAA                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM618000             [                                                                           CCGGGAGCGAGCGATATACGGTGAAAATGGGTAGCTTGTTTACTCTCTAGCAGCAAAATAGCCAAATGTCCTGTTTGAGTTCCTTTTTCCTCTGTGAGTTATCAAGCAATCGAAAGAGCGAGAGCGAGAAAGGAAGACATTCTACTCTTGTTGTTTCGTTTTTTTTTGGAATGGGATTGAAAATATTACATTTTTTTTAAACAATTGTTTTCAATTGTTCTACGCCGATTGTTGTTTGCTCCAACAATTCACCAACAATGGAAGTAGCGGAGTATCGAAATATGCTCCCGACTTCTTCCCCTATGCCCGATGCCCCTATTTATACGCATGCAGTGCACGAGAGTTTGTCAGTTAAAGTTTTGATTGACTGAGACCTTCAAA CGATTCCATTTAAAGCTGTGATACGAAAACTCTTCTTTGTAAGCCTCCTCCCTCCTCCACCCCAGCCAAATTGCATCCGCCGCTCGTATAAGCAGGCGGATGCTTCCAGCTCACAGGTGTTCCGTTTCCCCGTGGATGACTGGGGGGGGAGACTCATCATCAATCCTGCCCACCGGTTCCACTCACAGGACCAGTGTTTTGCTCTGGTTCAACGTTGTTTTCATCATTGTTTTTTTTTATGATTTGCTTTATTTTGTTTTTTACTCTCTGGGGTAACTTTTTTCTCTCCAAAAGTATCCCTTTCATCTCACCTGGCTTATGCTTTTGCACCCTTTTTATACTTTTGT]




>consensus_3986#0
CCGAACGCAATGAGCCAAACACAGCTCACATACAAACACAACACTCACATACAAGGTCAG
GTACGGCCAGAACCCCCAGGAGCGAGCGATATACGGTGAAAATGGGTTGCTTGTTTACTC
TCTAGCAGCAAAATAGCCAAATGTCCTGTTTGAGTTCCTTTTTCCTCTGTGAGTTATCAA
GCAATCGAAAGAGCGAGAGCGAGAAAGGAAGACATTCTACTCTTGTTGTTTCTTTTTTTT
GGAATGGGATTGAAAATATTACATTTTTTTTAAACAATTGTTTTCAATTGTTCTACGCCG
ATTGTTGTTTGCTCCAACAATTCACCAACAATGGAAGTAGCGGAGTATCGAAATATGTTC
CCGACTTCTTCCCCTATGCCCGATGCCCCTATTTATACGCATGCAGTGCACGAGAGTTTG
TCAGTTAAAGTTTTGATTGACTGAAACCTTCAAACCGATTCCATTTAAAGCTGTGATACG
AAAACTCTTCTTTGTAAGCCTCCTCCCTCCTCCACCCCAGCCAAATTGCATCCGCCGCTC
GTATAAGCAGGCGGATGCTTCCAGCTCACAGGTGTTCCGTTTCCCCGTGGATGACTGGGG
GGGGAGACTCATCATCAATCCTGCCCACCGGTTCCACTCACAGGACCAGTGTTTTGCTCT
GGTTCAACGTTGTTTTCATCATTGTTTTTTTTTATGATTTGCTTTATTTTGTTTTTTACT
CTCTGGGGTAACTTTTTTCTCTCCAAAAGTATCCCTTTCATCTCACCTGGCTTATGCTTT
TGCACCCTTTTTATACTTTTGT

consensusID : consensus_3986#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [GCTCAGCAGAATCGCCCCGAGGTTTCAGATGGGAATCGGAGGCATCGCATGAGGATGTGTTTGCTGCTTCGGTTTTTGGAAAACCGGAAAGGGCTAACTAATGTAAGGGCAAACTGTGTTTAGATATAAATTATACACATAAACACATCCCCACACACAAACACACACACACACACACACATACAAAAGCACCCACTGCAGAGTTGGCATTTGATACCCGAATTAATCAAGCATACATTACGAACAAAAGCAAATAACATCATGATTATTCATATGTACAGTAAAAACCACGCAAACGCAATGAGCCAAACACAGCTCACATACCAAACACAAACTCACATACAAGGTCAGGTACGGGCCAGATCCCCCAGGAGCTGAGCGATACGGTGAACAATGGGTTGCTTGCCTTTACTCTCTAGCAGGCAAAATAGGCCAAATGTCCTGTATCGCACGTTACCATATTAGATCCTCTGTGACGTTCATCAACGCAATTCGAAAGAGCGGAAGAGGCGAGACAACTGGGAAAGACATTTCTA]

[+] EMBL AL697213             [GCTCAGCAGAATCGCCCCGAGGTTTCAGATGGGAATCGGAGGCATCGCATGAGGATGTGTTTGCTGCTTCGGTTTTTGGAAAACCGGAAAGGGCTAACTAATGTAAGGGCAAACTGTGTTTAGATATAAATTATACACATAAACACATCCCCACACACAAACACACACACACACACACACATACAAAAGCACCCACTGCAGAGTTGGCATTTGATACCCGAATTAATCAAGCATACATTACGAACAAAAGCAAATAACATCATGATTATTCATATGTACAGTAAAAACCACGCAAACGCAATGAGCCAAACACAGCTCACATACCAAACACAAACTCACATACAAGGTCAGGTACGGGCCAGATCCCCCAGGAGCTGAGCGATACGGTGAACAATGGGTTGCTTGCCTTTACTCTCTAGCAGGCAAAATAGGCCAAATGTCCTGTATCGCACGTTACCATATTAGATCCTCTGTGACGTTCATCAACGCAATTCGAAAGAGCGGAAGAGGCGAGACAACTGGGAAAGACATTTCTA]




>consensus_3986#1
GCTCAGCAGAATCGCCCCGAGGTTTCAGATGGGAATCGGAGGCATCGCATGAGGATGTGT
TTGCTGCTTCGGTTTTTGGAAAACCGGAAAGGGCTAACTAATGTAAGGGCAAACTGTGTT
TAGATATAAATTATACACATAAACACATCCCCACACACAAACACACACACACACACACAC
ATACAAAAGCACCCACTGCAGAGTTGGCATTTGATACCCGAATTAATCAAGCATACATTA
CGAACAAAAGCAAATAACATCATGATTATTCATATGTACAGTAAAAACCACGCAAACGCA
ATGAGCCAAACACAGCTCACATACCAAACACAAACTCACATACAAGGTCAGGTACGGGCC
AGATCCCCCAGGAGCTGAGCGATACGGTGAACAATGGGTTGCTTGCCTTTACTCTCTAGC
AGGCAAAATAGGCCAAATGTCCTGTATCGCACGTTACCATATTAGATCCTCTGTGACGTT
CATCAACGCAATTCGAAAGAGCGGAAGAGGCGAGACAACTGGGAAAGACATTTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3986#0      CCGAACGCAATGAGCCAAACACAGCTCACATACAAACACAACACTCACATACAAGGTCAG 60
consensus_3986#1      ------------------------------------------------------------
                                                                                  

consensus_3986#0      GTACGGCCAGAACCCCCAGGAGCGAGCGATATACGGTGAAAATGGGTTGCTTGTTTACTC 120
consensus_3986#1      ------------------------------------------------------------
                                                                                  

consensus_3986#0      TCTAGCAGCAAAATAGCCAAATGTCCTGTTTGAGTTCCTTTTTCCTCTGTGAGTTATCAA 180
consensus_3986#1      ------------------------------------------------------------
                                                                                  

consensus_3986#0      GCAATCGAAAGAGCGAGAGCGAGAAAGGAAGACATTCTACTCTTGTTGTTTCTTTTTTTT 240
consensus_3986#1      ----------------------------------GCTCAGCAGAATCGCCCCGAGGTTTC 26
                                                            *      * *   *    *** 

consensus_3986#0      GGAATGGGATTGAAAATATTACATTTTTTTTAAACAATTGTTTTCAATTGTTCTACGCCG 300
consensus_3986#1      AGATGGGAATCGGAGGCATCGCATGAGGATGTGTTTGCTGCTTCGGTTTTTGGAAAACCG 86
                       **  ** ** * *   **  ***     *        ** **    ** *   *  ***

consensus_3986#0      ---ATTGTTGTTTGCTCCAACAATTCACCAACAATGGAAGTAGCGGA-GTATCGAAATAT 356
consensus_3986#1      GAAAGGGCTAACTAATGTAAGGGCAAACTGTGTTTAGATATAAATTATACACATAAACAC 146
                         *  * *   *  *  **      **      * **  **    *   *   *** * 

consensus_3986#0      GTTCCCG-ACTTCTTCCCCTATGCCCGATGCCCCTATTTATACGCATGCAGTGCACGAGA 415
consensus_3986#1      ATCCCCACACACAAACACACACACAC-ACACACACATACAAAAGCACCCACTGCA---GA 202
                       * ***  **     * *  *  * * *  * *  **  * * ***  ** ****   **

consensus_3986#0      GTTTGTCAGTTAAAGTTTTGATTGACTGAAACCTTCAAACCGATTCCATTTAAAGCTGTG 475
consensus_3986#1      GTT-GGCATTTGATACCCGAATTAA-TCAAGCATACATTACGAACAAAAGCAAA-TAACA 259
                      *** * ** ** *       *** * * ** * * **   ***    *   ***      

consensus_3986#0      ATACGAAAACTCTTCTTTGTAAGCCTCCTCCCTCCTCCACCCCAGCCAAATTGCATCCGC 535
consensus_3986#1      TCATGATTATTCATATGTACAGTAAAAACCACGCAAACGCAATGAGCCAAACACAGCTCA 319
                        * **  * ** * * *  *        * * *   * *      * **   ** *   

consensus_3986#0      CGCTCGTATAAGCAGGCGGATGCTTCCAGCTCACAGGTGTTCCGTTTCCCCGTGGATGAC 595
consensus_3986#1      CATAC-CAAACACAAACTCACA-TACAAGGTCAGGTACGGGCCAGATCCCCCAGGA--GC 375
                      *   *  * *  **  *  *   * * ** ***     *  **   *****  ***   *

consensus_3986#0      TGGGGGGGGAGACTCATCATCAAT--CCTGCCCACCGGTTCCA-CTCACAGGACCAGTGT 652
consensus_3986#1      TGAGCGATACGGTGAACAATGGGTTGCTTGCCTTTACTCTCTAGCAGGCAAAATAGGCCA 435
                      ** * *    *    *  **   *  * ****       ** * *   **  *   *   

consensus_3986#0      TTTGCTCTGGTTCAACGTTGTTTTCATCATTGTTTTTTTTTATGATTTGCTTTATTTTGT 712
consensus_3986#1      AATGTCCTGTATCGC--ACGTTACCATATTAGATCCTCT--GTGACGTTCATCAACGCAA 491
                        **  ***  **      ***  ***  * * *  * *   ***  * * * *      

consensus_3986#0      TTTTTACTCTCTGGGGTAACTTTTTTCTCTCCAAAAGTATCCCTTTCATCTCACCTGGCT 772
consensus_3986#1      TTCGAAAGAGCGGAAGAGGCGAGACAACTGGGAAAGACATTTCTA--------------- 536
                      **   *    * *  *   *            ***   **  **                

consensus_3986#0      TATGCTTTTGCACCCTTTTTATACTTTTGT 802
consensus_3986#1      ------------------------------