cluster # 3988

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3988 cluster # 3988 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3988#0 length = 902 sequences # 2

consensus_3988#1 length = 358 sequences # 1

consensusID : consensus_3988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 902
fasta sequence

                              [CCGGTCGGTTGTTTTATGTAATTTTTGTTGTAAATATTTGTAGTCCCAGTGCGCCCAGTGTGGTGTAGTTTTGTTTATTGTTTAGTGCTGTTTCGTGTTATTTGTGTTTGTGTGTGTGTGTATGTGACTACCTGTAAGAATGTGTACCACTGCTCGCGAGCCAATATGCTGCAACGACCAAAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACGACAGCCCGAGCCATACGTCCGATACGGCGTATGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTCTCACGCAACTGCGTGGTGGACAAAGACAAGCGCAACCAGTGCCGGTACTGTAGGCTGAAGAAATGCTTCAAAGCGGGCATGAAAAAAGGAGGCGGTCCAGAACGAGCGGGACCGCATCAGCTGCCGCAAGCCGAGCACGGACGATAAGAACACCATCAACGGGCTGTCGGTGAAGTTTCTGCTGCGGGCGGAAAACTTTAGCCGCCACTTCGGCGCGGCGCTGGACGAAACGAACGACGCGGAGGAGGCCGACCTGTCGTCGAAGCGGTTCGCCAGCATCAACGACGTGTGCGACTCGATGAAGCAGCAGCTGCTGATACTGGTCGAGTGGGCCAAATCGATACCGGCCTTCGCCGAGCTGCAGCTGGACGATCAGGTCGCGCTGCTGCGGGCGCACGCGGGCGAACATCTGCTGCTCGGGCTGTCCCGCCGGTCGATGCACCTGCAGGACAT]

[+] EMBL BM598135             [CCGGTCGGTTGTTTTATGTAATTTTTGTTGTAAATATTTGTAGTCCCAGTGCGCCCAGTGTGGTGTAGTTTTGTTTATTGTTTAGTGCTGTTTCGTGTTATTTGTGTTTGTGTGTGTGTGTATGTGACTACCTGTAAGAATGTGTACCACTGCTCGCGAGCCAATATGCTGCAACGACCAAAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACGACAGCCCGAGCCATACGTCCGATACGGCGTATGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTCTCACGCAACTGCGTGGTGGACAAAGACAAGCGCAACCAGTGCCGGTACTGTAGGCTGAAGAAATGCTTCAAAGCGGGCATGAAAAAAGGAGGCGGTCCAGAACGAGCGGGACCGCATCAGCTGCCGCAAGCCGAGCACGGACGATAAGAACACCATCAA                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM618330             [                                                                                                                                                                                                                                                       GACCCACGCGTCCG    GGCGTATGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTCTCACGCAACTGCGTGGTGGACAAAGACAAGCGCAACCAGTGTCGGTACTGTAGGCTGAAGAAATGCTTCAAAGCGGGCATG AAAAAGGAGGCGGTCCAGAACGAGCGGGACCGCATCAGCTGCCGCAAGCCGAGCACGGACGATAAGAACACCATCAACGGGCTGTCGGTGAAGTTTCTGCTGCGGGCGGAAAACTTTAGCCGCCACTTCGGCGCGGCGCTGGACGAAACGAACGACGCGGAGGAGGCCGACCTGTCGTCGAAGCGGTTCGCCAGCATCAACGACGTGTGCGACTCGATGAAGCAGCAGCTGCTGATACTGGTCGAGTGGGCCAAATCGATACCGGCCTTCGCCGAGCTGCAGCTGGACGATCAGGTCGCGCTGCTGCGGGCGCACGCGGGCGAACATCTGCTGCTCGGGCTGTCCCGCCGGTCGATGCACCTGCAGGACAT]




>consensus_3988#0
CCGGTCGGTTGTTTTATGTAATTTTTGTTGTAAATATTTGTAGTCCCAGTGCGCCCAGTG
TGGTGTAGTTTTGTTTATTGTTTAGTGCTGTTTCGTGTTATTTGTGTTTGTGTGTGTGTG
TATGTGACTACCTGTAAGAATGTGTACCACTGCTCGCGAGCCAATATGCTGCAACGACCA
AAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACG
ACAGCCCGAGCCATACGTCCGATACGGCGTATGAATCATGCCTGAGTCCCCTGCAGCCGA
ACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGG
GCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAA
GGAAAAACCATACCTACTCCTGCAGATTCTCACGCAACTGCGTGGTGGACAAAGACAAGC
GCAACCAGTGCCGGTACTGTAGGCTGAAGAAATGCTTCAAAGCGGGCATGAAAAAAGGAG
GCGGTCCAGAACGAGCGGGACCGCATCAGCTGCCGCAAGCCGAGCACGGACGATAAGAAC
ACCATCAACGGGCTGTCGGTGAAGTTTCTGCTGCGGGCGGAAAACTTTAGCCGCCACTTC
GGCGCGGCGCTGGACGAAACGAACGACGCGGAGGAGGCCGACCTGTCGTCGAAGCGGTTC
GCCAGCATCAACGACGTGTGCGACTCGATGAAGCAGCAGCTGCTGATACTGGTCGAGTGG
GCCAAATCGATACCGGCCTTCGCCGAGCTGCAGCTGGACGATCAGGTCGCGCTGCTGCGG
GCGCACGCGGGCGAACATCTGCTGCTCGGGCTGTCCCGCCGGTCGATGCACCTGCAGGAC
AT

consensusID : consensus_3988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [CCGCCCACGCGTTCGGCACATAACTGTAGTGATGTCGGGTGTTTTATAGTGTGTACCACTGCTCGCGAGCCAATATGCTGCGACGACCAAAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACGACAGCCCGAGCCATACGTCCGATACGGGGTATGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTC]

[+] EMBL BM656222             [CCGCCCACGCGTTCGGCACATAACTGTAGTGATGTCGGGTGTTTTATAGTGTGTACCACTGCTCGCGAGCCAATATGCTGCGACGACCAAAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACGACAGCCCGAGCCATACGTCCGATACGGGGTATGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTC]




>consensus_3988#1
CCGCCCACGCGTTCGGCACATAACTGTAGTGATGTCGGGTGTTTTATAGTGTGTACCACT
GCTCGCGAGCCAATATGCTGCGACGACCAAAATGTCTAACGCCGGAATAGAGTACAGCGA
GCTGAACGACCGAACGAAAGGAAGCCACGACAGCCCGAGCCATACGTCCGATACGGGGTA
TGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGT
GTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGG
ATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3988#0      CCGGTCGGTTGTTTTATGTAATTTTTGTTGTAAATATTTGTAGTCCCAGTGCGCCCAGTG 60
consensus_3988#1      ------------------------------------------------------------
                                                                                  

consensus_3988#0      TGGTGTAGTTTTGTTTATTGTTTAGTGCTGTTTCGTGTTATTTGTGTTTGTGTGTGTGTG 120
consensus_3988#1      ---------------------------CCGCC-CACGCGTTCGGCACATAACTGTAGTGA 32
                                                 * *   *  *   *  *    *   ***     

consensus_3988#0      TATGTGACTACCTGTAAGAATGTGTACCACTGCTCGCGAGCCAATATGCTGCAACGACCA 180
consensus_3988#1      TGTCGGGTGTTTTATAG---TGTGTACCACTGCTCGCGAGCCAATATGCTGCGACGACCA 89
                      * *  *      * **    ******************************** *******

consensus_3988#0      AAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACG 240
consensus_3988#1      AAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACG 149
                      ************************************************************

consensus_3988#0      ACAGCCCGAGCCATACGTCCGATACGGCGTATGAATCATGCCTGAGTCCCCTGCAGCCGA 300
consensus_3988#1      ACAGCCCGAGCCATACGTCCGATACGGGGTATGAATCATGCCTGAGTCCCCTGCAGCCGA 209
                      *************************** ********************************

consensus_3988#0      ACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGG 360
consensus_3988#1      ACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGG 269
                      ************************************************************

consensus_3988#0      GCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAA 420
consensus_3988#1      GCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAA 329
                      ************************************************************

consensus_3988#0      GGAAAAACCATACCTACTCCTGCAGATTCTCACGCAACTGCGTGGTGGACAAAGACAAGC 480
consensus_3988#1      GGAAAAACCATACCTACTCCTGCAGATTC------------------------------- 358
                      *****************************                               

consensus_3988#0      GCAACCAGTGCCGGTACTGTAGGCTGAAGAAATGCTTCAAAGCGGGCATGAAAAAAGGAG 540
consensus_3988#1      ------------------------------------------------------------
                                                                                  

consensus_3988#0      GCGGTCCAGAACGAGCGGGACCGCATCAGCTGCCGCAAGCCGAGCACGGACGATAAGAAC 600
consensus_3988#1      ------------------------------------------------------------
                                                                                  

consensus_3988#0      ACCATCAACGGGCTGTCGGTGAAGTTTCTGCTGCGGGCGGAAAACTTTAGCCGCCACTTC 660
consensus_3988#1      ------------------------------------------------------------
                                                                                  

consensus_3988#0      GGCGCGGCGCTGGACGAAACGAACGACGCGGAGGAGGCCGACCTGTCGTCGAAGCGGTTC 720
consensus_3988#1      ------------------------------------------------------------
                                                                                  

consensus_3988#0      GCCAGCATCAACGACGTGTGCGACTCGATGAAGCAGCAGCTGCTGATACTGGTCGAGTGG 780
consensus_3988#1      ------------------------------------------------------------
                                                                                  

consensus_3988#0      GCCAAATCGATACCGGCCTTCGCCGAGCTGCAGCTGGACGATCAGGTCGCGCTGCTGCGG 840
consensus_3988#1      ------------------------------------------------------------
                                                                                  

consensus_3988#0      GCGCACGCGGGCGAACATCTGCTGCTCGGGCTGTCCCGCCGGTCGATGCACCTGCAGGAC 900
consensus_3988#1      ------------------------------------------------------------
                                                                                  

consensus_3988#0      AT 902
consensus_3988#1      --