cluster # 3997

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Anopheles gambiae
cluster # 3997 cluster # 3997 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3997#0 length = 594 sequences # 2

consensus_3997#1 length = 508 sequences # 1

consensusID : consensus_3997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 594
fasta sequence

                              [AGATCGCCGACGGGTTAAATGTGTGTGATTATTACATANAAATATTAGCATTATTTGATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCGTGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAGAGAATAAAGCCAGGAAATACAATAAAACCAAAAATTAGTCAGGAAAGCATCAACCCAAAAATGGAAACCAAAAAACAAATGAAGCAAAAACAAATGAACAAACAATTTATTTATTGCANAATGATTCTGATCGTGCGCTGCGATATTCGATAGTGGATTTNTAATTGTAACCCAACTACCACTGTTTGGAGTGCTAGCGTNTTGAACTTTNCGCAATCATTCATGCTGCGCTTACTNTANATAAGTTAACTGAAACGAGGAGCAATACTAGCCTTCAATTATTTCCCTTAACCGCGTGACACTGTAACAAACGTGCTCAGCATACGTGTTGAAAGCATCTTACTTTATTCATCACACTTCAGAACGTTAACATCGAACACCGCATGTGTTATACACTCTGCTAAACTTTTGTTAAAC]

[+] EMBL AL697490             [AGATCGCCGACGGGTTAAATGTGTGTGATTATTACATANAAATATTAGCATTATTTGATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCGTGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAGAGAATAAAGCCAGGAAATACAATAAAACCAAAAATTAGTCAGGAAAGCATCAACCCAAAAATGGAAACCAAAAAACAAATGAAGCAAAAACAAATGAACAAACAATTTATTTATTGCANAATGATTCTGATCGTGCGCTGCGATATTCGATAGTGGATTTNTAATTGTAACCCAACTACCACTGTTTGGAGTGCTAGCGTNTTGAACTTTNCGCAATCATTCATGCTGCGCTTACTNTANATAAGTTAACTGAAACGAGGAGCAATACTAGCCTTCAATTATTTCCCTTAACCGCGTGACACTGTAACAAACGTGCTCAGCATACGTGTTGAAAGCATCTTACTTTATTCATCACACTTCAGAACGTTAACATCGAACACCGCATGTGTTATACACTCTGCT               ]
[+] EMBL BX615445             [                                                                                                                                                                                                                                                                                                                                                                                                                                aATAAGTTAACTGAAA GAGGAGCAATACTAGCTTTCAATTATTTCCCTTAACCGCGTGACACTGTAA AAACGTGCTCAGCATACGTGTTGAAAGCATCTT CTTTATTCATCACACTTCAGAACGTTAA ATCGAACACCGCATGTGTTATACACTCTGTTAAACTTTTGTTAAAC]




>consensus_3997#0
AGATCGCCGACGGGTTAAATGTGTGTGATTATTACATANAAATATTAGCATTATTTGATA
ACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCGTGC
GTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAGAGA
ATAAAGCCAGGAAATACAATAAAACCAAAAATTAGTCAGGAAAGCATCAACCCAAAAATG
GAAACCAAAAAACAAATGAAGCAAAAACAAATGAACAAACAATTTATTTATTGCANAATG
ATTCTGATCGTGCGCTGCGATATTCGATAGTGGATTTNTAATTGTAACCCAACTACCACT
GTTTGGAGTGCTAGCGTNTTGAACTTTNCGCAATCATTCATGCTGCGCTTACTNTANATA
AGTTAACTGAAACGAGGAGCAATACTAGCCTTCAATTATTTCCCTTAACCGCGTGACACT
GTAACAAACGTGCTCAGCATACGTGTTGAAAGCATCTTACTTTATTCATCACACTTCAGA
ACGTTAACATCGAACACCGCATGTGTTATACACTCTGCTAAACTTTTGTTAAAC

consensusID : consensus_3997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [CAGAATCGCCACGAGGNGCAAATGTGTGTGATTATTACATAAAAATATTAGCATTATTTGATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCGTGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAGAGAATAAAGCCAGGAAATACAATAAAACAAAAATTAGTCAGGAAAGCATCAACCCAAAAATGGAAACCAAAAAACAAATGAAGCAAAAGACAAATGAACAAACAATTTATTTATTGCCAAATGATTCTGATCGTGCGCTGCGATATTCGATAGCTGGATTTTAAGTTGTAACCCAACTACCACTGATTCTGGAGTGCTAGCGTNATTAGAACTTTTNCGCNAAGTCATTCATGGTGCGACTTACTTGAATAAGTTCAACNTGAAAAGAGGAGCAATTACTAGGCCGTTCNANTGTATTGCCCGTTAAGCACAGCGGTGACACATGTAG]

[+] EMBL BX469085             [CAGAATCGCCACGAGGNGCAAATGTGTGTGATTATTACATAAAAATATTAGCATTATTTGATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCGTGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAGAGAATAAAGCCAGGAAATACAATAAAACAAAAATTAGTCAGGAAAGCATCAACCCAAAAATGGAAACCAAAAAACAAATGAAGCAAAAGACAAATGAACAAACAATTTATTTATTGCCAAATGATTCTGATCGTGCGCTGCGATATTCGATAGCTGGATTTTAAGTTGTAACCCAACTACCACTGATTCTGGAGTGCTAGCGTNATTAGAACTTTTNCGCNAAGTCATTCATGGTGCGACTTACTTGAATAAGTTCAACNTGAAAAGAGGAGCAATTACTAGGCCGTTCNANTGTATTGCCCGTTAAGCACAGCGGTGACACATGTAG]




>consensus_3997#1
CAGAATCGCCACGAGGNGCAAATGTGTGTGATTATTACATAAAAATATTAGCATTATTTG
ATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCG
TGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAG
AGAATAAAGCCAGGAAATACAATAAAACAAAAATTAGTCAGGAAAGCATCAACCCAAAAA
TGGAAACCAAAAAACAAATGAAGCAAAAGACAAATGAACAAACAATTTATTTATTGCCAA
ATGATTCTGATCGTGCGCTGCGATATTCGATAGCTGGATTTTAAGTTGTAACCCAACTAC
CACTGATTCTGGAGTGCTAGCGTNATTAGAACTTTTNCGCNAAGTCATTCATGGTGCGAC
TTACTTGAATAAGTTCAACNTGAAAAGAGGAGCAATTACTAGGCCGTTCNANTGTATTGC
CCGTTAAGCACAGCGGTGACACATGTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3997#0      --AGATCGCCGACGGGT-TAAATGTGTGTGATTATTACATANAAATATTAGCATTATTTG 57
consensus_3997#1      CAGAATCGCCACGAGGNGCAAATGTGTGTGATTATTACATAAAAATATTAGCATTATTTG 60
                          ******    **   ********************** ******************

consensus_3997#0      ATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCG 117
consensus_3997#1      ATAACTTTAATAACAAACTGCGCCGCAAATGAGTGTGTGTGTGTTGTGTGTGTGTTGCCG 120
                      ************************************************************

consensus_3997#0      TGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAG 177
consensus_3997#1      TGCGTGCGTTTAGCCGGATAAAATAAATGGAAAAGAGAAAGAGAGAATGAAGAAGGGTAG 180
                      ************************************************************

consensus_3997#0      AGAATAAAGCCAGGAAATACAATAAAACCAAAAATTAGTCAGGAAAGCATCAACCCAAAA 237
consensus_3997#1      AGAATAAAGCCAGGAAATACAATAAAAC-AAAAATTAGTCAGGAAAGCATCAACCCAAAA 239
                      **************************** *******************************

consensus_3997#0      ATGGAAACCAAAAAACAAATGAAGCAAAA-ACAAATGAACAAACAATTTATTTATTGCAN 296
consensus_3997#1      ATGGAAACCAAAAAACAAATGAAGCAAAAGACAAATGAACAAACAATTTATTTATTGCCA 299
                      ***************************** ****************************  

consensus_3997#0      AATGATTCTGATCGTGCGCTGCGATATTCGATAG-TGGATTTNTAATTGTAACCCAACTA 355
consensus_3997#1      AATGATTCTGATCGTGCGCTGCGATATTCGATAGCTGGATTTTAAGTTGTAACCCAACTA 359
                      ********************************** *******  * **************

consensus_3997#0      CCACTG--TTTGGAGTGCTAGCGTNTT--GAACTTTNC---GCAATCATTCATGCTGCGC 408
consensus_3997#1      CCACTGATTCTGGAGTGCTAGCGTNATTAGAACTTTTNCGCNAAGTCATTCATGGTGCGA 419
                      ******  * *************** *  *******       * ********* **** 

consensus_3997#0      TTACTNTANATAAGTTAA--CTGAAACGAGGAGCAAT-ACTAGCC--TTCAATTATTTCC 463
consensus_3997#1      CTTACTTGAATAAGTTCAACNTGAAAAGAGGAGCAATTACTAGGCCGTTCNANTGTATTG 479
                       *    *  ******* *   ***** ********** ***** *  *** * * * *  

consensus_3997#0      CTTAACCGCGTGACACTGTAACAAACGTGCTCAGCATACGTGTTGAAAGCATCTTACTTT 523
consensus_3997#1      CCCG-TTAAGCACAGCGGTGACACATGTAG------------------------------ 508
                      *        *     * ** *** * **                                

consensus_3997#0      ATTCATCACACTTCAGAACGTTAACATCGAACACCGCATGTGTTATACACTCTGCTAAAC 583
consensus_3997#1      ------------------------------------------------------------
                                                                                  

consensus_3997#0      TTTTGTTAAAC 594
consensus_3997#1      -----------