cluster # 4010

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Anopheles gambiae
cluster # 4010 cluster # 4010 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4010#0 length = 671 sequences # 2

consensus_4010#1 length = 439 sequences # 1

consensusID : consensus_4010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 671
fasta sequence

                              [CGTCCCTTCCGGGGAAACGCGCACGTGGTTTACAATGGGTCTTTCTACTATAACGAGCGTAACTCGCCCCGCATCATCAAGTACGATCTGAACGTGGAACGACAGACGGCAATGAACGAGCTGGAGGGTGTCACCACGAACGGTTCCAATTATCTGTACACTACCGAAATTAATTACATGGACTTCAACGTGGACGACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAACACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAGCGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGATTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGACCTCTACCACAGCAAGCTGCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACCACCGTGGGGTACAATTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTACCCGATACGGTACCACGAGATAGGCTACAATACGACAGCCACCGAGAAGGCGGACGACGGTTTGAACCCGCAGATGCAGACCGGATACGACATTTACAACGATCACGACGCCGAAACGGAGGATGTACGCTAATGCGGCCA]

[+] EMBL BX605388             [CGTCCCTTCCGGGGAAACGCGCACGTGGTTTACAATGGGTCTTTCTACTATAACGAGCGTAACTCGCCCCGCATCATCAAGTACGATCTGAACGTGGAACGACAGACGGCAATGAACGAGCTGGAGGGTGTCACCACGAACGGTTCCAATTATCTGTACACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX602617             [                                                                                                           GGCAATGAACGAGCTGGAGGGTGTCACCACGAACGGTTCCAATTATCTGTACACTACCGAAATTAATTACATGGACTTCAACGTGGACGACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAACACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAGCGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGATTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGACCTCTACCACAGCAAGCTGCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACCACCGTGGGGTACAATTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTACCCGATACGGTACCACGAGATAGGCTACAATACGACAGCCACCGAGAAGGCGGACGACGGTTTGAACCCGCAGATGCAGACCGGATACGACATTTACAACGATCACGACGCCGAAACGGAGGATGTACGCTAATGCGGCCA]




>consensus_4010#0
CGTCCCTTCCGGGGAAACGCGCACGTGGTTTACAATGGGTCTTTCTACTATAACGAGCGT
AACTCGCCCCGCATCATCAAGTACGATCTGAACGTGGAACGACAGACGGCAATGAACGAG
CTGGAGGGTGTCACCACGAACGGTTCCAATTATCTGTACACTACCGAAATTAATTACATG
GACTTCAACGTGGACGACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAAC
ACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAGC
GTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGAT
TCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGACCTCTACCACAGCAAGCTG
CTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACCACCGTGGGGTACAAT
TTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTACCCGATACGG
TACCACGAGATAGGCTACAATACGACAGCCACCGAGAAGGCGGACGACGGTTTGAACCCG
CAGATGCAGACCGGATACGACATTTACAACGATCACGACGCCGAAACGGAGGATGTACGC
TAATGCGGCCA

consensusID : consensus_4010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [TCGCCNGAGGTTNACATGGACTTCAACGTGGACGCACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAACACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAGCGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGATTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGAACTCTAACACAGCAAGCTGCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACACCGTGGGGTACAATTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTAACCGATACGGTACCACGAGATAGGCTACAATACGACAGGCAACGAGAAGGCGGACGACGGTTTGAACCCGC]

[+] EMBL AL929758             [TCGCCNGAGGTTNACATGGACTTCAACGTGGACGCACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAACACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAGCGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGATTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGAACTCTAACACAGCAAGCTGCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACACCGTGGGGTACAATTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTAACCGATACGGTACCACGAGATAGGCTACAATACGACAGGCAACGAGAAGGCGGACGACGGTTTGAACCCGC]




>consensus_4010#1
TCGCCNGAGGTTNACATGGACTTCAACGTGGACGCACAATGGACTGTGGGTAATTTACGG
GACGCCCGATTCGAACAACACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACA
GTACGGGTGGAACATTAGCGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGG
TGTCCTGTACGCGATCGATTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGA
ACTCTAACACAGCAAGCTGCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGAC
GACACCGTGGGGTACAATTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAG
TTGACCTAACCGATACGGTACCACGAGATAGGCTACAATACGACAGGCAACGAGAAGGCG
GACGACGGTTTGAACCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4010#0      CGTCCCTTCCGGGGAAACGCGCACGTGGTTTACAATGGGTCTTTCTACTATAACGAGCGT 60
consensus_4010#1      ------------------------------------------------------------
                                                                                  

consensus_4010#0      AACTCGCCCCGCATCATCAAGTACGATCTGAACGTGGAACGACAGACGGCAATGAACGAG 120
consensus_4010#1      ------------------------------------------------------------
                                                                                  

consensus_4010#0      CTGGAGGGTGTCACCACGAACGGTTCCAATTATCTGTACACTACCGAAATTAATTACATG 180
consensus_4010#1      ----------------------------------------TCGCCNGAGGT--TNACATG 18
                                                                 **  *  *  * *****

consensus_4010#0      GACTTCAACGTGGACG-ACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAA 239
consensus_4010#1      GACTTCAACGTGGACGCACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAA 78
                      **************** *******************************************

consensus_4010#0      CACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAG 299
consensus_4010#1      CACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAG 138
                      ************************************************************

consensus_4010#0      CGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGA 359
consensus_4010#1      CGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGA 198
                      ************************************************************

consensus_4010#0      TTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGACCTCTACCACAGCAAGCT 419
consensus_4010#1      TTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGAACTCTAACACAGCAAGCT 258
                      ****************************************** ***** ***********

consensus_4010#0      GCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACCACCGTGGGGTACAA 479
consensus_4010#1      GCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGAC-ACCGTGGGGTACAA 317
                      ********************************************* **************

consensus_4010#0      TTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTACCCGATACG 539
consensus_4010#1      TTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTAACCGATACG 377
                      *************************************************** ********

consensus_4010#0      GTACCACGAGATAGGCTACAATACGACAGCCACCGAGAAGGCGGACGACGGTTTGAACCC 599
consensus_4010#1      GTACCACGAGATAGGCTACAATACGACAGGCAACGAGAAGGCGGACGACGGTTTGAACCC 437
                      ***************************** ** ***************************

consensus_4010#0      GCAGATGCAGACCGGATACGACATTTACAACGATCACGACGCCGAAACGGAGGATGTACG 659
consensus_4010#1      GC---------------------------------------------------------- 439
                      **                                                          

consensus_4010#0      CTAATGCGGCCA 671
consensus_4010#1      ------------