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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 835 fasta sequence
[GCAAGAATCGCCGAGNGATACGGTACACTCGATACTGTGGCGGGTGTACTGGAACAGACAAGTACCGCCCGANNGCTTACGAGTGGTTTCGGCAAAGTGTTGCCTTCTATCAGTGTGAATGAACCAGTGAAGTGATTCGCAGCAGAACGACGGTGATCCTTTCGCTCACTTACTGAGTGACGAACATTACGTCACCTACAATATTCTTGACCTGATAGTGCCTGTATACCTGTACCATCTTATTCTTTGATTATCTGGTCGTCCGAGATTGGAAATTTCTATGAAATTATCGAACCAATCATTGCACTGCATGGCAGGTATACTTGCTCTATCATCACAAGGAAGAACTGGCAGCATGTAACGCTGTGCCATAAAGCTGCAACCATCATTGAGTCACACTCTGGTCTGTCACAGTTCCATGCCACGTTCCCTACTTGCCATTACACCACCCCGTTAATTTGAGTTTGATTTCAAAGTGACTGAAAGGGTACAGGCCTCGTTGCTCGAGCGTAAACTTGCAACTCTGGCGACTGGGTTTTGTTCCGACGATTTTGCTCGACGTGGCAACGAATTCAATACCTGTGCCACCCTGCTGTTCATGTTGCACGGTACTTACCCTGTAACCTGCTTGAGGCAGTGTGGCGCCATCCGATATTCGAACGCGGATCTACTTTTTGCTCATTTGCTCAGCAGCTTTCTAAGGGTGTGTCGATCTAACGCTGGAACCTGTATCCACAGCTGCTTGAATCCACGAGCCTTTCGATTGGCCATCNGNATTTCAGAATGTGTACCACATATGGCTCGGGTGGGCCAAAGGTGCCTGGTCTGTCCGAAG]
[+] EMBL AL931334 [GCAAGAATCGCCGAGNGATACGGTACACTCGATACTGTGGCGGGTGTACTGGAACAGACAAGTACCGCCCGANNGCTTACGAGTGGTTTCGGCAAAGTGTTGCCTTCTATCAGTGTGAATGAACCAGTGAAGTGATTCGCAGCAGAACGACGGTGATCCTTTCGCTCACTTACTGAGTGACGAACATTACGTCACCTACAATATTCTTGACCTGATAGTGCCTGTATACCTGTACCATCTTATTCTTTGATTATCTGGTCGTCCGAGATTGGAAATTTCTATGAAATTATCGAACCAATCATTGCACTGCATGGCAGGTATACTTGCTCTATCATCACAAGGAAGAACTGGCAGCATGTAACGCTGTGCCATAAAGCTGCAACCATCATTGAGTCACACTCTGGTCTGTCACAGTTCCATGCCACGTTCCCTACTTGCCATTACACCACCCCGTTAATTTGAGTTTGATTTCAAAGTGACTGAAAGGGTACAGGCCTCGTTGCTCGAGCGTAAACTTGCAACTCTGGCGACTGGGTTTTGTTCCGACGATTTTGCTCGACGTGGCAACGAATTCAATACCTGTGCCACCCTGCTGTTCATGTTGCACGGTACTTACCCTGTAACCTGCTTGAGGCAGTGTGGCGCCATCCGATATTCGAACGCGGATCTACTTTTTGCTCATTTGCTCAGCAGCTTTCTAAGGGTGTGTCGATCTAACGCTGGAACCTGTATCCACAGCTGCTTGAATCCACGAGCCTTTCGATTGGCCATCNGNATTTCAGAATGTGTACCACATATGGCTCGGGTGGGCCAAAGGTGCCTGGTCTGTCCGAAG]
consensusID : consensus_4019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence
[CCGAGGTTTACCTACTGATCGTTGAGTAGCGCTCGCATCTTATTCNTTTGATTATCGGTCGTCCGAGATTGGAAAGTTTCTATGAAATTATCGAACCAATCATTGCACGCATGGCAGGTATACTGCTCTATCATCACAAGGACGAACGGCAGCATGTAACGCTGGCCATAAAGCGCAATCATCATGCGTCACACTCGGTCGTCACAGTTCCAGCCACGTTCCCTACTGTCATCACACCAACNCCCGTTAATTGAGTTGATTTCAAAGGATGTAAAGTGTACAGGCCTCGATATGCTCGAGCGTAAACTGCAACTATGGCGCTGGATTTCGTTCCGACGATTTGCTTGACGTGGAAGAGTTCAATACCGTGCCACCCGCGTTCATGTGCACGGTACTTACCCTGTACCGNCTTGAGACAGTGTGGCGCCATCCGCATATTCGAAGCGGATCTACTTNTAAGCTCATTGCTCAGACAGCTTTACTAAGGGTGTGTNNCGATCTAACGCTGGAACCGTATCCACAGCAGCTTGACATCCACGAGCCTTATCGATTCGGCCATTGTATTTCAGAATGTGTACCACCATATGGCTCGGGTGGCC]
[+] EMBL AL929884 [CCGAGGTTTACCTACTGATCGTTGAGTAGCGCTCGCATCTTATTCNTTTGATTATCGGTCGTCCGAGATTGGAAAGTTTCTATGAAATTATCGAACCAATCATTGCACGCATGGCAGGTATACTGCTCTATCATCACAAGGACGAACGGCAGCATGTAACGCTGGCCATAAAGCGCAATCATCATGCGTCACACTCGGTCGTCACAGTTCCAGCCACGTTCCCTACTGTCATCACACCAACNCCCGTTAATTGAGTTGATTTCAAAGGATGTAAAGTGTACAGGCCTCGATATGCTCGAGCGTAAACTGCAACTATGGCGCTGGATTTCGTTCCGACGATTTGCTTGACGTGGAAGAGTTCAATACCGTGCCACCCGCGTTCATGTGCACGGTACTTACCCTGTACCGNCTTGAGACAGTGTGGCGCCATCCGCATATTCGAAGCGGATCTACTTNTAAGCTCATTGCTCAGACAGCTTTACTAAGGGTGTGTNNCGATCTAACGCTGGAACCGTATCCACAGCAGCTTGACATCCACGAGCCTTATCGATTCGGCCA ]
[+] EMBL BM625629 [ ccGCAGGTATACTGCTCTATCATCACAAGGAAGAACGGCAGCATGTAACGCTGGCCATAAAGCGCAATCATCATGAGTCACACTCGGTCGTCACAGTTCCAGCCACGTTCCCTACTGCCATCACACC ACCCCCGTTAATTGAGTTGATTTCAAAGGATG AAAGTGTACAGGCCTTG T TGCTCGAGCGTAAACTGCAACTCTGGCGATGGGTTT GTTCCGACGATTTGCTTGACGTGGAAGAGTTCAATACCGTGCCACCCGCGTTCATGTGCACGGTACTTACCCTGTACCG CTTGAGGCAGTGTGGCGCCATCCGCATATTCGAAGCGGATCTACTTTT GCTCATTGCTCAG CAGCTTT CTAAGGGTGTGT TCGATCTAACGCTGGAACCTCATCCACAGC GCCTGA ATCCACGAGCCTT TCGATT GGCATTTGTATTTCAGAATGTGTACCACCATATGGCTCGGGTGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4019#0 GCAAGAATCGCCGAGNGATACGGTACACTCGATACTGTGGCGGGTGTACTGGAACAGACA 60
consensus_4019#1 ------------------------------------------------------------
consensus_4019#0 AGTACCGCCCGANNGCTTACGAGTGGTTTCGGCAAAGTGTTGCCTTCTATCAGTGTGAAT 120
consensus_4019#1 ------------------------------------------------------------
consensus_4019#0 GAACCAGTGAAGTGATTCGCAGCAGAACGACGGTGATCCTTTCGCTCACTTACTGAGTGA 180
consensus_4019#1 ------------------------------------------------------------
consensus_4019#0 CGAACATTACGTCACCTACAATATTCTTGACCTGATAGTGCCTGTATACCTGTACCATCT 240
consensus_4019#1 --------------------CCGAGGTTTACCTACTGATCGTTGAGTAGCGCTCGCATCT 40
** **** * * ** ** * * *****
consensus_4019#0 TATTCTTT-GATTATCTGGTCGTCCGAGATTGGAAA-TTTCTATGAAATTATCGAACCAA 298
consensus_4019#1 TATTCNTTTGATTATC-GGTCGTCCGAGATTGGAAAGTTTCTATGAAATTATCGAACCAA 99
***** ** ******* ******************* ***********************
consensus_4019#0 TCATTGCACTGCATGGCAGGTATACTTGCTCTATCATCACAAGGAAGAACTGGCAGCATG 358
consensus_4019#1 TCATTGCAC-GCATGGCAGGTATACT-GCTCTATCATCACAAGGACGAAC-GGCAGCATG 156
********* **************** ****************** **** *********
consensus_4019#0 TAACGCTGTGCCATAAAGCTGCAACCATCATTGAGTCACACTCTGGTCTGTCACAGTTCC 418
consensus_4019#1 TAACGCTG-GCCATAAAGC-GCAATCATCAT-GCGTCACACTC-GGTC-GTCACAGTTCC 211
******** ********** **** ****** * ********* **** ***********
consensus_4019#0 ATGCCACGTTCCCTACTTGCCATTACACCA--CCCCGTTAATTTGAGTTTGATTTCAAAG 476
consensus_4019#1 A-GCCACGTTCCCTACT-GTCATCACACCAACNCCCGTTAATT-GAGTT-GATTTCAAAG 267
* *************** * *** ****** ********** ***** **********
consensus_4019#0 TGACTGAAAGGGTACAGGCCTCGTT--GCTCGAGCGTAAACTTGCAACTCTGGCGACTGG 534
consensus_4019#1 -GATGTAAAGTGTACAGGCCTCGATATGCTCGAGCGTAAACT-GCAACTATGGCG-CTGG 324
** **** ************ * *************** ****** ***** ****
consensus_4019#0 GTTTTGTTCCGACGATTTTGCTCGACGTGGCAACGAATTCAATACCTGTGCCACCCTGCT 594
consensus_4019#1 ATTTCGTTCCGACGATTT-GCTTGACGTGGAA--GAGTTCAATACC-GTGCCACCC--GC 378
*** ************* *** ******* * ** ********* *********
consensus_4019#0 GTTCATGTTGCACGGTACTTACCCTGTAACCTGCTTGAGGCAGTGTGGCGCCATCCG-AT 653
consensus_4019#1 GTTCATGT-GCACGGTACTTACCCTGTA-CCGNCTTGAGACAGTGTGGCGCCATCCGCAT 436
******** ******************* ** ****** ***************** **
consensus_4019#0 ATTCGAACGCGGATCTACTTTTTGCTCATTTGCTCAG-CAGCTTT-CTAAGGGTGTGTCG 711
consensus_4019#1 ATTCGAA-GCGGATCTACTTNTAAGCTCATTGCTCAGACAGCTTTACTAAGGGTGTGTNN 495
******* ************ * ******** ******* ************
consensus_4019#0 --ATCTAACGCTGGAACCTGTATCCACAGCTGCTTGA-ATCCACGAGCCTT-TCGATTGG 767
consensus_4019#1 CGATCTAACGCTGGAACC-GTATCCACAGCAGCTTGACATCCACGAGCCTTATCGATTCG 554
**************** *********** ****** ************* ****** *
consensus_4019#0 CCATCNGNATTTCAGAATGTGTACCAC-ATATGGCTCGGGTGGGCCAAAGGTGCCTGGTC 826
consensus_4019#1 GCCATTGTATTTCAGAATGTGTACCACCATATGGCTCGGGTGGCC--------------- 599
* * ******************* *************** *
consensus_4019#0 TGTCCGAAG 835
consensus_4019#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||