cluster # 4026

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Anopheles gambiae
cluster # 4026 cluster # 4026 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4026#0 length = 706 sequences # 2

consensus_4026#1 length = 357 sequences # 1

consensusID : consensus_4026#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 706
fasta sequence

                              [CCGGACAGGAACCTCGAGGAGTAGCCGCAACAGCACTTTGCACACAGGCTTGCTAAAATGTTAACCAAGTTACTTCCCAGACTTTCCGGCAAATTATGCGAAACTACCATCAGCAAGTACGGTGGGCAGTGCATCAGTGTGTGCTACGCCCACAAGGCAGCCGTCCTGCGCGAAGCCGGCAAACCCGTCGCACTGGAAACGGTGAAAAAGAACGAGAAGCTAAAAAACGATGAGGTGCGCGTTAAGGTACACTATTGCAGCCTCAACACAACGGACGTGAAAATCATTGCCGGAAAGCATGCGGAGCTGAACGTGCCCTTGCCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATCGTCGAAATCGGCCAAGACAATCCGCACCATTTCAACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTTAAAAATCGTGACGTATGGACCGTGCCGCAGTCAGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTATGGGCACGGTACCGCGCTGCTAACGTTCGCGCTGCACTGCAATTTAAAGGAAAACGATCTAATACTGATAACGGCCGGTCCGGCCGGAATGGGACTGGCGGCGATCCGATCTGGCGGTCAGCGTGTACAAAGACGAAGGTGATTGCCGTGTGCGACACGGAGAGCAGCTCCGATCT]

[+] EMBL BM585706             [CCGGACAGGAACCTCGAGGAGTAGCCGCAACAGCACTTTGCACACAGGCTTGCTAAAATGTTAACCAAGTTACTTCCCAGACTTTCCGGCAAATTATGCGAAACTACCATCAGCAAGTACGGTGGGCAGTGCATCAGTGTGTGCTACGCCCACAAGGCAGCCGTCCTGCGCGAAGCCGGCAAACCCGTCGCACTGGAAACGGTGAAAAAGAACGAGAAGCTAAAAAACGATGAGGTGCGCGTTAAGGTACACTATTGCAGCCTCAACACAACGGACGTGAAAATCATTGCCGGAAAGCATGCGGAGCTGAACGTGCCCTTGCCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATCGTCGAAATCGGCCAAGACAATCCGCACCATTTCAACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTTAAAAATCGTGACGTATGGACCGTGCCGCAGTCAGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTATGGGCACGGTACCGCGCTGCTAACGTTCGCGCTGCACTGCAATTTAAAGGAAAACGATCTAATACTGATAACGGCCGGTCCGGCCGGAATGGGACTGGCGGCGATCCGATCTGGCGGTCAGCGTGTACAAAGACGAAGGTGATTGCCGT                           ]
[+] EMBL BM639561             [                                       ccgCACAGGCTTGCTAAAATGTTAACCAAGTTACTTCCCAGACTTTCCGGCAAATTATGCGAAACAACCATCAGCAAGTACGGTGGGCAGTGCATCAGTGTGTGCTACGCCCACAAGGCAGCCGTCCTGCGCGAAGCCGGCAAACCCGTCGCACTGGAAACGGTGAAAAAGAACGAGAAGCTAAAAAACGATGAGGTGCGCGTTAAGGTACACTATTGCAGCCTCAACACTACGGACGTGAAAATCATTGCCGGAAAGCATGCGGAGCTGAACGTGCCCTTGCCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATTGTCGAAATCGGCCAAGACAACCCGCACCATTTCAACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTGAAAAATCGAGACGTCTGGACCGTACCGCAGTCGGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTACGGGCACGGAACGGCGCTGCTAACGTTCGCCCTGCACTGCAATTTGAAGGAAAACGATCTGATACTGATAACGGCCGGTCCGGCCGGTATGGGACTGGCGGCGAT CGATCTGGCGGTCAGCGTGTACAAAG CGAAGGTGATTGCCGTGTGCGACACGGAGAGCAGCTCCGATCT]




>consensus_4026#0
CCGGACAGGAACCTCGAGGAGTAGCCGCAACAGCACTTTGCACACAGGCTTGCTAAAATG
TTAACCAAGTTACTTCCCAGACTTTCCGGCAAATTATGCGAAACTACCATCAGCAAGTAC
GGTGGGCAGTGCATCAGTGTGTGCTACGCCCACAAGGCAGCCGTCCTGCGCGAAGCCGGC
AAACCCGTCGCACTGGAAACGGTGAAAAAGAACGAGAAGCTAAAAAACGATGAGGTGCGC
GTTAAGGTACACTATTGCAGCCTCAACACAACGGACGTGAAAATCATTGCCGGAAAGCAT
GCGGAGCTGAACGTGCCCTTGCCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATCGTC
GAAATCGGCCAAGACAATCCGCACCATTTCAACCGGGGCGATCGGGTGGTGGTGATGAAC
GATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTTAAAAATCGTGACGTA
TGGACCGTGCCGCAGTCAGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTATGGGCACGGT
ACCGCGCTGCTAACGTTCGCGCTGCACTGCAATTTAAAGGAAAACGATCTAATACTGATA
ACGGCCGGTCCGGCCGGAATGGGACTGGCGGCGATCCGATCTGGCGGTCAGCGTGTACAA
AGACGAAGGTGATTGCCGTGTGCGACACGGAGAGCAGCTCCGATCT

consensusID : consensus_4026#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [GAATTGCCCCCGAGGGTATTATTGCCCGGAAAGGGCCAAATTGGCGGGGGAAGGCTGAACGTGCCCTNGCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATTGTCGAAATCGGCCAAGACAACCCGCACATTTCACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTGAAAAATCGAGACGTCTGGACCGTACCGCAGTCGGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTACGGGCACGGAACGGCGCTGCTAACGTTCGCCCTGCACTGCAATTTGAAGGAAAACGATCTGATACTGATAACGGCGGTCCGG]

[+] EMBL AL930168             [GAATTGCCCCCGAGGGTATTATTGCCCGGAAAGGGCCAAATTGGCGGGGGAAGGCTGAACGTGCCCTNGCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATTGTCGAAATCGGCCAAGACAACCCGCACATTTCACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTGAAAAATCGAGACGTCTGGACCGTACCGCAGTCGGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTACGGGCACGGAACGGCGCTGCTAACGTTCGCCCTGCACTGCAATTTGAAGGAAAACGATCTGATACTGATAACGGCGGTCCGG]




>consensus_4026#1
GAATTGCCCCCGAGGGTATTATTGCCCGGAAAGGGCCAAATTGGCGGGGGAAGGCTGAAC
GTGCCCTNGCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATTGTCGAAATCGGCCAAG
ACAACCCGCACATTTCACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCG
AATGGGGGCCTCATCTCGGAGGCGGTCGTGAAAAATCGAGACGTCTGGACCGTACCGCAG
TCGGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTACGGGCACGGAACGGCGCTGCTAACG
TTCGCCCTGCACTGCAATTTGAAGGAAAACGATCTGATACTGATAACGGCGGTCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4026#0      CCGGACAGGAACCTCGAGGAGTAGCCGCAACAGCACTTTGCACACAGGCTTGCTAAAATG 60
consensus_4026#1      ------------------------------------------------------------
                                                                                  

consensus_4026#0      TTAACCAAGTTACTTCCCAGACTTTCCGGCAAATTATGCGAAACTACCATCAGCAAGTAC 120
consensus_4026#1      ------------------------------------------------------------
                                                                                  

consensus_4026#0      GGTGGGCAGTGCATCAGTGTGTGCTACGCCCACAAGGCAGCCGTCCTGCGCGAAGCCGGC 180
consensus_4026#1      ------------------------------------------------------------
                                                                                  

consensus_4026#0      AAACCCGTCGCACTGGAAACGGTGAAAAAGAACGAGAAGCTAAAAAACGATGAGGTGCGC 240
consensus_4026#1      ---------------------------------------------------GAATTGCCC 9
                                                                         **  *** *

consensus_4026#0      GTTAAGGTACACTATTGCAGCCTCAACACAACGGACGTGAAAATCATTGCCGGAAAGCAT 300
consensus_4026#1      CCGAGGGTAT--TATTGCC-------CGGAAAGGGCC---AAATTGGCGGGGGAAGGC-- 55
                         * ****   ******        *  ** ** *    ****    *  **** **  

consensus_4026#0      GCGGAGCTGAACGTGCCCTTGCCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATCGTC 360
consensus_4026#1      -------TGAACGTGCCCTNGC-GTTCATCCCCGGGCACGAATTTTCCGGCGAAATTGTC 107
                             ************ ** ********************************* ***

consensus_4026#0      GAAATCGGCCAAGACAATCCGCACCATTTCAACCGGGGCGATCGGGTGGTGGTGATGAAC 420
consensus_4026#1      GAAATCGGCCAAGACAACCCGCAC-ATTTCA-CCGGGGCGATCGGGTGGTGGTGATGAAC 165
                      ***************** ****** ****** ****************************

consensus_4026#0      GATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTTAAAAATCGTGACGTA 480
consensus_4026#1      GATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTGAAAAATCGAGACGTC 225
                      ******************************************** ******** ***** 

consensus_4026#0      TGGACCGTGCCGCAGTCAGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTATGGGCACGGT 540
consensus_4026#1      TGGACCGTACCGCAGTCGGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTACGGGCACGGA 285
                      ******** ******** ******************************** ******** 

consensus_4026#0      ACCGCGCTGCTAACGTTCGCGCTGCACTGCAATTTAAAGGAAAACGATCTAATACTGATA 600
consensus_4026#1      ACGGCGCTGCTAACGTTCGCCCTGCACTGCAATTTGAAGGAAAACGATCTGATACTGATA 345
                      ** ***************** ************** ************** *********

consensus_4026#0      ACGGCCGGTCCGGCCGGAATGGGACTGGCGGCGATCCGATCTGGCGGTCAGCGTGTACAA 660
consensus_4026#1      ACGGC-GGTCCGG----------------------------------------------- 357
                      ***** *******                                               

consensus_4026#0      AGACGAAGGTGATTGCCGTGTGCGACACGGAGAGCAGCTCCGATCT 706
consensus_4026#1      ----------------------------------------------