cluster # 4032

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4032 cluster # 4032 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4032#0 length = 859 sequences # 2

consensus_4032#1 length = 842 sequences # 1

consensusID : consensus_4032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 859
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTACATGAAAAACATGACGTACGCCAGCATGACAATTATATTGTTACAGTTCGTAGGTTATCCCTCCACGTGTCCTTTGTAGACCCTTTACGCAG-ACAAAACCAAAGCCCACCAACTGCCAATAACAAACATTAATCCTTTTTTATCTTCTCTCTTAAGCATTTCATGCTTTCGTCTGACAATTTTCGAAACCAGCTGTTCGCTACCTGTTTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCGCTGGATGATCGCGCGCTCCGC-C-CCTAGGAACCGTACTCCTCCATCGCACACTTCCAGGCGTGCACGTGC-GGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATACGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGATCCGTTCAGTTGTGCAACTTCGTCGGTGTGTGGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTTGTTGCCGTTGCGATCCTTGCGCACGCTTTTCGGGCTTGACGGTGGCGTAAAGAACGCATCCTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGACCCGTTCAGCTGGAGCGGTTCCTTTCCACCACCGCTACGGTAAGTGTGGAAGTCGACCACAACCGGCGCTGGTGCCAGTTCCGACGCCGAAGTGGTCCGAATCGCACGCTTTTCGCGCCGTTTGTTCATTCGCTCCATTATGCCCGGAGGCGGCCGGTGCCGGC]

[+] EMBL CNS09FXJ             [TTTTTTTTTTTTTTTTTTTTTTACATGAAAAACATGACGTACGCCAGCATGACAATTATATTGTTACAGTTCGTAGGTTATCCCTCCACGTGTCCTTTGTAGACCCTTTACGCAG ACAAAACCAAAGCCCACCAACTGCCAATAACAAACATTAATCCTTTTTTATCTTCTCTCTTAAGCATTTCATGCTTTCGTCTGACAATTTTCGAAACCAGCTGTTCGCTACCTGTTTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCGCTGGATGATCGCGCGCTCCGC C CCTAGGAACCGTACTCCTCCATCGCACACTTCCAGGCGTGCACGTGC GGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATACGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGATCCGTTCAGTTGTGCAACTTCGTCGGTGTGTGGCGCCCCGTT                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CNS09OUJ             [                                                    CAATTATATTGTTACAGTTCGTAGGTTATCCCTCCACGTGTCCTTTGTAGACCCTTTACGCAGTACAAAACCAAAGCCCACCAACTGCCAATAACAAACATTAATCCTTTTTTATCTTCTCTCTTAAGCATTTCATGCTTTCGTCTGACAATTTTCGAAACCAGCTGTTCGCTACCTGTTTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCGCTGGATGATCGCGCGCTCCGCACACCTAGGAACCGTACTCCTCCATCGCACACTTCCAGGCGTGCACGTGCGGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATACGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGATCCGTTCAGTTGTGCTCCTTCGTCGGTGTGTAGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTTGTTGCCGTTGCGATCCTTGCGCACGCTTTTCGGGCTTGACGGTGGCGTAAAGAACGCATCCTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGACCCGTTCAGCTGGAGCGGTTCCTTTCCACCACCGCTACGGTAAGTGTGGAAGTCGACCACAACCGGCGCTGGTGCCAGTTCCGACGCCGAAGTGGTCCGAATCGCACGCTTTTCGCGCCGTTTGTTCATTCGCTCCATTATGCCCGGAGGCGGCCGGTGCCGGC]




>consensus_4032#0
TTTTTTTTTTTTTTTTTTTTTTACATGAAAAACATGACGTACGCCAGCATGACAATTATA
TTGTTACAGTTCGTAGGTTATCCCTCCACGTGTCCTTTGTAGACCCTTTACGCAGACAAA
ACCAAAGCCCACCAACTGCCAATAACAAACATTAATCCTTTTTTATCTTCTCTCTTAAGC
ATTTCATGCTTTCGTCTGACAATTTTCGAAACCAGCTGTTCGCTACCTGTTTTATTCGAG
ATTCGAGACACAATCGTTCGAGACACAATCCCGCTGGATGATCGCGCGCTCCGCCCCTAG
GAACCGTACTCCTCCATCGCACACTTCCAGGCGTGCACGTGCGGATGCGTCTGCGGATCG
ATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCG
GAAATGAATACGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGG
CTCGTATCCATCGATCCGTTCAGTTGTGCAACTTCGTCGGTGTGTGGCGCCCCGTTCAGC
AAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTTGTTGCCGTTGCGATCCTTGCGCACG
CTTTTCGGGCTTGACGGTGGCGTAAAGAACGCATCCTCTTCCTGCTCGTTCTCGGAATCG
CTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGACCCGTTCAGCTGGAGCGGTTCCTTT
CCACCACCGCTACGGTAAGTGTGGAAGTCGACCACAACCGGCGCTGGTGCCAGTTCCGAC
GCCGAAGTGGTCCGAATCGCACGCTTTTCGCGCCGTTTGTTCATTCGCTCCATTATGCCC
GGAGGCGGCCGGTGCCGGC

consensusID : consensus_4032#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 842
fasta sequence

                              [ACGNGTTCGGTCTAGCAATGACAAGTTAATNATCTGTTACAGGTTNCGTAGGGTNATNCCCTCCNACGGTGTCCNTTTTGGTAGACCCTTGTTTAACGCAGTTACCTAAATACCCANAAGGCCCCCAACCTAAACCTGCCAAATTAACAAACCANTTAAATCCCGTGTCTGTTGTATCCGTTCTCTCCTTAAAGCATGTGCAATGCTTTTCGGTCTTGACAATTTTTCCAAACCAGCTGTTCGCTACCTGTCTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCACAGGATGATCGCGCGCCCCCGCCCCTAGGAACCGTACTCCACCATCGCACACTTCCAGGCGTGCACGTGCGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATGCGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGAACCGTTCAGTTGTGCTCCTTCGTCGGTGTGTAGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTTGTTGCCGTTGCGATCCTTGCGCAGCGCTTTCGGGCTTGACGGTGGCGTAAAGAACGCATCCTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGACCCGTTCAGCTGGAGCGGCTCCTTCCCGCCACCGCTACGGTACGTGTGGAAGTCGACCACAACCGGCGATGGTGCCGGTTCCGACGCCGAAGTGGTCCGAATCGCACCANCGTGCCGAATTCTGC]

[-] EMBL BX468142             [ACGNGTTCGGTCTAGCAATGACAAGTTAATNATCTGTTACAGGTTNCGTAGGGTNATNCCCTCCNACGGTGTCCNTTTTGGTAGACCCTTGTTTAACGCAGTTACCTAAATACCCANAAGGCCCCCAACCTAAACCTGCCAAATTAACAAACCANTTAAATCCCGTGTCTGTTGTATCCGTTCTCTCCTTAAAGCATGTGCAATGCTTTTCGGTCTTGACAATTTTTCCAAACCAGCTGTTCGCTACCTGTCTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCACAGGATGATCGCGCGCCCCCGCCCCTAGGAACCGTACTCCACCATCGCACACTTCCAGGCGTGCACGTGCGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATGCGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGAACCGTTCAGTTGTGCTCCTTCGTCGGTGTGTAGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTTGTTGCCGTTGCGATCCTTGCGCAGCGCTTTCGGGCTTGACGGTGGCGTAAAGAACGCATCCTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGACCCGTTCAGCTGGAGCGGCTCCTTCCCGCCACCGCTACGGTACGTGTGGAAGTCGACCACAACCGGCGATGGTGCCGGTTCCGACGCCGAAGTGGTCCGAATCGCACCANCGTGCCGAATTCTGC]




>consensus_4032#1
ACGNGTTCGGTCTAGCAATGACAAGTTAATNATCTGTTACAGGTTNCGTAGGGTNATNCC
CTCCNACGGTGTCCNTTTTGGTAGACCCTTGTTTAACGCAGTTACCTAAATACCCANAAG
GCCCCCAACCTAAACCTGCCAAATTAACAAACCANTTAAATCCCGTGTCTGTTGTATCCG
TTCTCTCCTTAAAGCATGTGCAATGCTTTTCGGTCTTGACAATTTTTCCAAACCAGCTGT
TCGCTACCTGTCTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCACAGGAT
GATCGCGCGCCCCCGCCCCTAGGAACCGTACTCCACCATCGCACACTTCCAGGCGTGCAC
GTGCGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTC
CTGCTTGGTTGGCATCGTTTCGGAAATGAATGCGGTATAGCGTTGCTTCTGCTGTTGCTC
CTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGAACCGTTCAGTTGTGCTCCTTCGTC
GGTGTGTAGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTTGTT
GCCGTTGCGATCCTTGCGCAGCGCTTTCGGGCTTGACGGTGGCGTAAAGAACGCATCCTC
TTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGACCC
GTTCAGCTGGAGCGGCTCCTTCCCGCCACCGCTACGGTACGTGTGGAAGTCGACCACAAC
CGGCGATGGTGCCGGTTCCGACGCCGAAGTGGTCCGAATCGCACCANCGTGCCGAATTCT
GC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4032#0      ---------TTTTTTTTTTTTTTTTTTTTTTACATGAAAAACATGACGTACGCCAGCATG 51
consensus_4032#1      ACGNGTTCGGTCTAGCAATGACAAGTTAATNATCTGTTACAGGTTNCGTAGGGTNATNCC 60
                                * *     *      **  * *  **  * *  *  **** *        

consensus_4032#0      ACAATTATATTGTTACAGTTCGTAGGTTATCCCTCCACGT-GTCCTTTGTAGACCCTTTA 110
consensus_4032#1      -CTCCNACGGTGTCCNTTTTGGTAGACCCTTGTTTAACGCAGTTACCTAAATACCCANAA 119
                       *    *   ***     ** ****    *   *  ***  **    *  * ****   *

consensus_4032#0      CGCAGACAAAACCAAAGCCCACCAACT--GCCAATAAC--AAACATTAATCCTTTTTTAT 166
consensus_4032#1      GGCC--CCCAACCTAAACCTGCCAAATTAACAAACCANTTAAATCCCGTGTCTGTTGTAT 177
                       **   *  **** ** **  **** *   * **  *   ***        ** ** ***

consensus_4032#0      C--TTCTCTCTT--AAGCATTTC--ATGCTTTC--GTCT-GACAATTTT-CGAAACCAGC 216
consensus_4032#1      CCGTTCTCTCCTTAAAGCATGTGCAATGCTTTTCGGTCTTGACAATTTTTCCAAACCAGC 237
                      *  ******* *  ****** *   *******   **** ********* * ********

consensus_4032#0      TGTTCGCTACCTGTTTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCGCTG 276
consensus_4032#1      TGTTCGCTACCTGTCTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCACAG 297
                      ************** ***************************************** * *

consensus_4032#0      GATGATCGCGCGCTCC-GCCCCTAGGAACCGTACTCCTCCATCGCACACTTCCAGGCGTG 335
consensus_4032#1      GATGATCGCGCGCCCCCGCCCCTAGGAACCGTACTCCACCATCGCACACTTCCAGGCGTG 357
                      ************* ** ******************** **********************

consensus_4032#0      CACGTGCGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAA 395
consensus_4032#1      CACGTGCGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAA 417
                      ************************************************************

consensus_4032#0      GTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATACGGTATAGCGTTGCTTCTGCTGTTG 455
consensus_4032#1      GTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATGCGGTATAGCGTTGCTTCTGCTGTTG 477
                      ********************************** *************************

consensus_4032#0      CTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGATCCGTTCAGTTGTGCAACTTC 515
consensus_4032#1      CTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGAACCGTTCAGTTGTGCTCCTTC 537
                      *************************************** **************  ****

consensus_4032#0      GTCGGTGTGTGGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTT 575
consensus_4032#1      GTCGGTGTGTAGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTT 597
                      ********** *************************************************

consensus_4032#0      GTTGCCGTTGCGATCCTTGCGCACGCTTTTCGGGCTTGACGGTGGCGTAAAGAACGCATC 635
consensus_4032#1      GTTGCCGTTGCGATCCTTGCGCAGCGCTTTCGGGCTTGACGGTGGCGTAAAGAACGCATC 657
                      ***********************    *********************************

consensus_4032#0      CTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGA 695
consensus_4032#1      CTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGA 717
                      ************************************************************

consensus_4032#0      CCCGTTCAGCTGGAGCGGTTCCTTTCCACCACCGCTACGGTAAGTGTGGAAGTCGACCAC 755
consensus_4032#1      CCCGTTCAGCTGGAGCGGCTCCTTCCCGCCACCGCTACGGTACGTGTGGAAGTCGACCAC 777
                      ****************** ***** ** ************** *****************

consensus_4032#0      AACCGGCGCTGGTGCCAGTTCCGACGCCGAAGTGGTCCGAATCGCACGCTTTTCGCGCCG 815
consensus_4032#1      AACCGGCGATGGTGCCGGTTCCGACGCCGAAGTGGTCCGAATCGCACCANCGTGCCGAAT 837
                      ******** ******* ******************************     *  **   

consensus_4032#0      TTTGTTCATTCGCTCCATTATGCCCGGAGGCGGCCGGTGCCGGC 859
consensus_4032#1      TCTGC--------------------------------------- 842
                      * **