cluster # 4056

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Anopheles gambiae
cluster # 4056 cluster # 4056 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4056#0 length = 858 sequences # 2

consensus_4056#1 length = 629 sequences # 1

consensusID : consensus_4056#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 858
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAGCGGGAGCAGACGCTAGGGGATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCGTCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCGATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCGAGAACGAACGCACGCTTCAGATCGAACGAGTCCGCAAGAATATCCCACATTTTCTGCCGTTTAGTATTGGTAAACGGACCTGCATCGGGCAAAATCTGGTGCGCGGTTTCAGCTTCATCATCATCGCCAACATCTTGCAGAAATACGACGTGCACTCGAACGACCTCAGCCTGATCAAGATGTACCCGGCTTGTGTGGCCGTGCCGCCCGACACCTACCCGCTCGCCTTTACACAGCGCTCGACGGTGGCTGCCTAGA]

[+] EMBL BM621668             [CCGCCCACGCGTCCGCCCACGCGTCCGAGCGGGAGCAGACGCTAGGGGATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCGTCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCGATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCGAGAACGAACGCACGCTTCAGATCGAACGAGTCCGCAAGAATATCCCACATTTTCTGCCGTTTAGTATTG                                                                                                                                                                                             ]
[+] EMBL BX626172             [                                                                                                                                                                                    TGATGCTTGCGCTCGGNTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGCCCCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCGATTCGCCGACCGCCAAGCAGGANCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCGAGAACGAACGCACGCTTCAGATCGAACGAGTCCGCAAGAATATCCCACATTTTCTGCCGTTTAGTATTGGTAAACGGACCTGCATCGGGCAAAATCTGGTGCGCGGTTTCAGCTTCATCATCATCGCCAACATCTTGCAGAAATACGACGTGCACTCGAACGACCTCAGCCTGATCAAGATGTACCCGGCTTGTGTGGCCGTGCCGCCCGACACCTACCCGCTCGCCTTTACACAGCGCTCGACGGTGGCTGCCTAGA]




>consensus_4056#0
CCGCCCACGCGTCCGCCCACGCGTCCGAGCGGGAGCAGACGCTAGGGGATGACGACACCG
AGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCGTCGGTAACGCGAG
ACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCGATCGGCAATCTGG
TGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTG
AGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCA
TGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGC
CGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCG
TGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCT
TCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCG
ATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCG
AGAACGAACGCACGCTTCAGATCGAACGAGTCCGCAAGAATATCCCACATTTTCTGCCGT
TTAGTATTGGTAAACGGACCTGCATCGGGCAAAATCTGGTGCGCGGTTTCAGCTTCATCA
TCATCGCCAACATCTTGCAGAAATACGACGTGCACTCGAACGACCTCAGCCTGATCAAGA
TGTACCCGGCTTGTGTGGCCGTGCCGCCCGACACCTACCCGCTCGCCTTTACACAGCGCT
CGACGGTGGCTGCCTAGA

consensusID : consensus_4056#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [CCGAGATCCGGGACTTCATACTTGAACGGATTGTGAACGAGCGGGAGCAGACGCTAGGGGATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCGTCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCGATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCGAGAACGAACGCACGCTT]

[+] EMBL BM595281             [CCGAGATCCGGGACTTCATACTTGAACGGATTGTGAACGAGCGGGAGCAGACGCTAGGGGATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCGTCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCGATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCGAGAACGAACGCACGCTT]




>consensus_4056#1
CCGAGATCCGGGACTTCATACTTGAACGGATTGTGAACGAGCGGGAGCAGACGCTAGGGG
ATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCGT
CGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCGA
TCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCACC
GGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATG
ATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCT
CGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCA
AAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCG
AGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGA
CGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAATG
GTGTGAGCAGCGAGAACGAACGCACGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4056#0      -------------CCGCCCACGCGTCCGCCCACGCGTCCGAGCGGGAGCAGACGCTAGGG 47
consensus_4056#1      CCGAGATCCGGGACTTCATACTTGAACGGAT-TGTGAACGAGCGGGAGCAGACGCTAGGG 59
                                   *  *  **  *  **     * *  **********************

consensus_4056#0      GATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCG 107
consensus_4056#1      GATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCG 119
                      ************************************************************

consensus_4056#0      TCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCG 167
consensus_4056#1      TCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCG 179
                      ************************************************************

consensus_4056#0      ATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCAC 227
consensus_4056#1      ATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCAC 239
                      ************************************************************

consensus_4056#0      CGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTAT 287
consensus_4056#1      CGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTAT 299
                      ************************************************************

consensus_4056#0      GATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCC 347
consensus_4056#1      GATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCC 359
                      ************************************************************

consensus_4056#0      TCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACC 407
consensus_4056#1      TCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACC 419
                      ************************************************************

consensus_4056#0      AAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGC 467
consensus_4056#1      AAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGC 479
                      ************************************************************

consensus_4056#0      GAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGG 527
consensus_4056#1      GAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGG 539
                      ************************************************************

consensus_4056#0      ACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAAT 587
consensus_4056#1      ACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAAT 599
                      ************************************************************

consensus_4056#0      GGTGTGAGCAGCGAGAACGAACGCACGCTTCAGATCGAACGAGTCCGCAAGAATATCCCA 647
consensus_4056#1      GGTGTGAGCAGCGAGAACGAACGCACGCTT------------------------------ 629
                      ******************************                              

consensus_4056#0      CATTTTCTGCCGTTTAGTATTGGTAAACGGACCTGCATCGGGCAAAATCTGGTGCGCGGT 707
consensus_4056#1      ------------------------------------------------------------
                                                                                  

consensus_4056#0      TTCAGCTTCATCATCATCGCCAACATCTTGCAGAAATACGACGTGCACTCGAACGACCTC 767
consensus_4056#1      ------------------------------------------------------------
                                                                                  

consensus_4056#0      AGCCTGATCAAGATGTACCCGGCTTGTGTGGCCGTGCCGCCCGACACCTACCCGCTCGCC 827
consensus_4056#1      ------------------------------------------------------------
                                                                                  

consensus_4056#0      TTTACACAGCGCTCGACGGTGGCTGCCTAGA 858
consensus_4056#1      -------------------------------