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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 777 fasta sequence
[GAGGCAGAATCCGCACGAGGCGACAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCT-CAGTC-GGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCGTTCCCGCCTTTCCGTACACTCGAACGGCTC-GATGCTGCGAATTCGGCTGGAACGACTCCAGGCTAGAGTCTC-GGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACA-GGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTAGAGAAGAATTTGTTGCGTGCGCTAGTTTGCGAAAATTT-CGTGCCCATACGCGATTGTCA-CATCGACATGGGTCAGAG-ACAAACCTATCGCNTCGTGCG-TTGCCTG-TCCGGGAATGTACAGNGCTCGGTGG-TCGGTTTACAATCAGGAGTTGCGT-GCACGANACGGG--CGAAACGCTTGTTGGGAAGACGGAAGGNACAAAGCGCTACAGTACTTGGCTGTCGGAAACGTGGCCCGGACTGTGCACCTTTTACGATTGGGACCAG]
[+] EMBL BX467797 [GAGGCAGAATCCGCACGAGGCGACAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCT CAGTC GGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCGTTCCCGCCTTTCCGTACACTCGAACGGCTC GATGCTGCGAATTCGGCTGGAACGACTCCAGGCTAGAGTCTC GGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACA GGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTAGAGAAGAATTTGTTGCGTGCGCTAGTTTGCGAAAATTT CGTGCCCATACGCGATTGTCA CATCGACATGGGTCAGAG ACAAACCTATCGCNTCGTGCG TTGCCTG TCCGGGAATGTACAGNGCTCGGTGG TCGGTTTACAATCAGGAGTTGCGT GCACGANACGGG CGAAACGCTTGTTGGGAAGACGGAAGGNACAAAGCGCTACAGTACTTGGCTGTCGGAAACGTGGCCCGGACTGTGCACCTTTTACGATTGGGACCAG]
[+] EMBL BX467579 [ GGCAGAATCGGCACGAGGCGACAGACGCTCCAGC AAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTA AAGATCTAGCTCCAGTCGGGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGC TTCCCGCCTTTCCGTACACTCGACCGCCTCGGATGCTGCGAATTCGGCTGGAACGACTCCA GCTAGAGTCTCGGGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTAGAGAAGAATTTGTTGCGTGCGCTAGTTTGC AAAATTTACGGTCCCAT CGCGATTGTCACCATCAAC TGGGTCAGAGAACAAACCTATCGC TCGTGCGTTTGCCTGTTCCCGGAATGTACA AGCTCGGTGGTTCGGTTTACCATCAGGAGTTGCTTGGCAGGAAAAGGGGCCGAACCGCTAGTTGGG AG CGGAAGGGACca ]
consensusID : consensus_4061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CAAGAATCGCCCGAGGTTTTACTGCATTGCGATTACTATGTCCTGAGGTGGAGCTGCGAGAGAAAAGTGTCGAGTACTGTGCCTACCGGGGCGTGATTGGAGAACGGCCGGAAATTGTAACCGACATAATCGAGATTGTTCTCGACAAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATTGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCTTCCCGCCTTTCCGTACACTCGACCGCCTCGATGCTGCGAATTCGGCTGGAACGACTCCAGCTAGAGTCTCGGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGGCACCCAACGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTACGAGAAGAATTTGTTGCGTGCGCTAGTTTGCAAAATTTCGTCCCATCGCGATTG]
[+] EMBL AL931484 [CAAGAATCGCCCGAGGTTTTACTGCATTGCGATTACTATGTCCTGAGGTGGAGCTGCGAGAGAAAAGTGTCGAGTACTGTGCCTACCGGGGCGTGATTGGAGAACGGCCGGAAATTGTAACCGACATAATCGAGATTGTTCTCGACAAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATTGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCTTCCCGCCTTTCCGTACACTCGACCGCCTCGATGCTGCGAATTCGGCTGGAACGACTCCAGCTAGAGTCTCGGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGGCACCCAACGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTACGAGAAGAATTTGTTGCGTGCGCTAGTTTGCAAAATTTCGTCCCATCGCGATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4061#0 ------------------------------------------------------------
consensus_4061#1 CAAGAATCGCCCGAGGTTTTACTGCATTGCGATTACTATGTCCTGAGGTGGAGCTGCGAG 60
consensus_4061#0 ------------------------------------------------------------
consensus_4061#1 AGAAAAGTGTCGAGTACTGTGCCTACCGGGGCGTGATTGGAGAACGGCCGGAAATTGTAA 120
consensus_4061#0 GAGGCAGAATCCGCACGAGGC--GACA-GACGCTCCAGCAAAGCAGTGAAGATATTTTGC 57
consensus_4061#1 CCGACATAATCGAGATTGTTCTCGACAAGACGCTCCAGCAAAGCAGTGAAGATATTTTGC 180
* ** **** * * **** ********************************
consensus_4061#0 AGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAG 117
consensus_4061#1 AGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAG 240
************************************************************
consensus_4061#0 ACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAA 177
consensus_4061#1 ACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAA 300
************************************************************
consensus_4061#0 CAAT-GTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGAT 236
consensus_4061#1 CAATTGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGAT 360
**** *******************************************************
consensus_4061#0 GAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCGTTCCCGCCTTTCCGTACACTCGAA 296
consensus_4061#1 GAAAGCTCCACGATGCTAACTGATCCGTGCGCCGC-TTCCCGCCTTTCCGTACACTCGAC 419
*********************************** ***********************
consensus_4061#0 CGGCTCGATGCTGCGAATTCGGCTGGAACGACTCCAGGCTAGAGTCTCGGCTTAACAAAC 356
consensus_4061#1 CGCCTCGATGCTGCGAATTCGGCTGGAACGACTCCAG-CTAGAGTCTCGGCTTAACAAAC 478
** ********************************** **********************
consensus_4061#0 GAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTA 416
consensus_4061#1 GAATGTTTTTGGTGTCGCAAAATCCG-GCACCCAAC-GTGGCATGTGCTACCGGATATTA 536
************************** ********* ***********************
consensus_4061#0 CTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACG 476
consensus_4061#1 CTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACG 596
************************************************************
consensus_4061#0 CACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTA-GAGAAGAATTTGTTGCGTGCG 535
consensus_4061#1 CACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTACGAGAAGAATTTGTTGCGTGCG 656
************************************** *********************
consensus_4061#0 CTAGTTTGCGAAAATTTCGTGCCCATACGCGATTGTCACATCGACATGGGTCAGAGACAA 595
consensus_4061#1 CTAGTTTGC-AAAATTTCGT-CCCAT-CGCGATTG------------------------- 688
********* ********** ***** ********
consensus_4061#0 ACCTATCGCNTCGTGCGTTGCCTGTCCGGGAATGTACAGNGCTCGGTGGTCGGTTTACAA 655
consensus_4061#1 ------------------------------------------------------------
consensus_4061#0 TCAGGAGTTGCGTGCACGANACGGGCGAAACGCTTGTTGGGAAGACGGAAGGNACAAAGC 715
consensus_4061#1 ------------------------------------------------------------
consensus_4061#0 GCTACAGTACTTGGCTGTCGGAAACGTGGCCCGGACTGTGCACCTTTTACGATTGGGACC 775
consensus_4061#1 ------------------------------------------------------------
consensus_4061#0 AG 777
consensus_4061#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||