cluster # 4078

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Anopheles gambiae
cluster # 4078 cluster # 4078 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4078#0 length = 673 sequences # 1

consensus_4078#1 length = 579 sequences # 1
consensus_4078#2 length = 441 sequences # 1

consensusID : consensus_4078#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [CCGGTGCGGTGTACGTGTGTATGTACTGCTTGTGCCAACAACAACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTCACTGAACTGCAATCATGGCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACACAGCGAGGCCAACCGATCGTGCTGGGTGGTGATCCGAAGAGCAAGAACTTCCTCTACACCAACGGGCATTCCGTGATTATCCGCAACATCGATAATCCCGAAATTGCGGACATCTACACCGAACACTCCTGCGCGGTGAACGTGGGCAAGTACTCGCCCAGGGGGGTCTACATTGCGTTCCGGGACGCGTCTGGGAAAATTCCCATCTGGGGACACCGGGGAACCAGGAACCCTACTGGAAAATGAATTTCCCCCCCATTGGGGGGCCCAATCAAGGACATCTCCTGGTCGCCCGACAGCCAGCGGATCGTGATCGTGGGCGAGGGCCTGGGAAGCGGTTCGGGCACGTGTTTATGGCGGAAACGGGCACCTCGGTGGGCGAGATTTCGGGCCAATCGAAGCCGATTAATTCGTGCGATTTCCGGCCGGCCCGCCCGTTCCGTATCATCACTGGCAGCGAGGACAACACGAATCGGCGTGTTCGAAGGGCCGCCGTTCAAGTTCAAGATGAC]

[+] EMBL BM654848             [CCGGTGCGGTGTACGTGTGTATGTACTGCTTGTGCCAACAACAACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTCACTGAACTGCAATCATGGCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACACAGCGAGGCCAACCGATCGTGCTGGGTGGTGATCCGAAGAGCAAGAACTTCCTCTACACCAACGGGCATTCCGTGATTATCCGCAACATCGATAATCCCGAAATTGCGGACATCTACACCGAACACTCCTGCGCGGTGAACGTGGGCAAGTACTCGCCCAGGGGGGTCTACATTGCGTTCCGGGACGCGTCTGGGAAAATTCCCATCTGGGGACACCGGGGAACCAGGAACCCTACTGGAAAATGAATTTCCCCCCCATTGGGGGGCCCAATCAAGGACATCTCCTGGTCGCCCGACAGCCAGCGGATCGTGATCGTGGGCGAGGGCCTGGGAAGCGGTTCGGGCACGTGTTTATGGCGGAAACGGGCACCTCGGTGGGCGAGATTTCGGGCCAATCGAAGCCGATTAATTCGTGCGATTTCCGGCCGGCCCGCCCGTTCCGTATCATCACTGGCAGCGAGGACAACACGAATCGGCGTGTTCGAAGGGCCGCCGTTCAAGTTCAAGATGAC]




>consensus_4078#0
CCGGTGCGGTGTACGTGTGTATGTACTGCTTGTGCCAACAACAACCAATTTCTCCGTGTG
CAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTCACTGAACTGCAATCATGG
CCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACACAGCGAGGCCAACCGATCG
TGCTGGGTGGTGATCCGAAGAGCAAGAACTTCCTCTACACCAACGGGCATTCCGTGATTA
TCCGCAACATCGATAATCCCGAAATTGCGGACATCTACACCGAACACTCCTGCGCGGTGA
ACGTGGGCAAGTACTCGCCCAGGGGGGTCTACATTGCGTTCCGGGACGCGTCTGGGAAAA
TTCCCATCTGGGGACACCGGGGAACCAGGAACCCTACTGGAAAATGAATTTCCCCCCCAT
TGGGGGGCCCAATCAAGGACATCTCCTGGTCGCCCGACAGCCAGCGGATCGTGATCGTGG
GCGAGGGCCTGGGAAGCGGTTCGGGCACGTGTTTATGGCGGAAACGGGCACCTCGGTGGG
CGAGATTTCGGGCCAATCGAAGCCGATTAATTCGTGCGATTTCCGGCCGGCCCGCCCGTT
CCGTATCATCACTGGCAGCGAGGACAACACGAATCGGCGTGTTCGAAGGGCCGCCGTTCA
AGTTCAAGATGAC

consensusID : consensus_4078#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [CCGGCCAATCGAAGCCGATCAATTCGTGCGATTTCCGCCCGGCCCGCCCGTTCCGCATCGTGACCGGCAGTGAGGACAACACGATCGGCGTGTTCGAGGGACCGCCGTTCAAGTTCAAGATGACCAAGCAGGACCACACCCGGTTCGTGCAGGCGGTGCGCTACTCGCCGAGCGGCCACCTGTTCGCTTCGGCCGGGTTCGATGGCAAGGTGTTCATCTACGACGGTACCACGTCCGAGCTGGTCGGTGAGGTGGGCTCGCCGGCGCACAGTGGCGGTGTGTACGGGGTCGCCTGGAAGCCGGACGGTACGCAGCTGCTGACCTGCTCGGGCGACAAGTCCTGCCGGCTGTGGGACGTGGCGACGCGCACGCTCATCAGCGAGTTCCCGATGGGCAGCACGGTCGACGATCAGCAGGTGTCGTGTCTGTGGCAGGGCGACCACATCCTGTCCGTGTCGCTGTCCGGGTTCATCAACTACCTCGATGTGAACAATCCCACCAAACCGCTGCGCATCGTGAAGGGCCACAACAAGCCGATCACGGTGCTGACGCTGAGCGACGATCGCAGCACGATCTACA]

[+] EMBL BM580212             [CCGGCCAATCGAAGCCGATCAATTCGTGCGATTTCCGCCCGGCCCGCCCGTTCCGCATCGTGACCGGCAGTGAGGACAACACGATCGGCGTGTTCGAGGGACCGCCGTTCAAGTTCAAGATGACCAAGCAGGACCACACCCGGTTCGTGCAGGCGGTGCGCTACTCGCCGAGCGGCCACCTGTTCGCTTCGGCCGGGTTCGATGGCAAGGTGTTCATCTACGACGGTACCACGTCCGAGCTGGTCGGTGAGGTGGGCTCGCCGGCGCACAGTGGCGGTGTGTACGGGGTCGCCTGGAAGCCGGACGGTACGCAGCTGCTGACCTGCTCGGGCGACAAGTCCTGCCGGCTGTGGGACGTGGCGACGCGCACGCTCATCAGCGAGTTCCCGATGGGCAGCACGGTCGACGATCAGCAGGTGTCGTGTCTGTGGCAGGGCGACCACATCCTGTCCGTGTCGCTGTCCGGGTTCATCAACTACCTCGATGTGAACAATCCCACCAAACCGCTGCGCATCGTGAAGGGCCACAACAAGCCGATCACGGTGCTGACGCTGAGCGACGATCGCAGCACGATCTACA]




>consensus_4078#1
CCGGCCAATCGAAGCCGATCAATTCGTGCGATTTCCGCCCGGCCCGCCCGTTCCGCATCG
TGACCGGCAGTGAGGACAACACGATCGGCGTGTTCGAGGGACCGCCGTTCAAGTTCAAGA
TGACCAAGCAGGACCACACCCGGTTCGTGCAGGCGGTGCGCTACTCGCCGAGCGGCCACC
TGTTCGCTTCGGCCGGGTTCGATGGCAAGGTGTTCATCTACGACGGTACCACGTCCGAGC
TGGTCGGTGAGGTGGGCTCGCCGGCGCACAGTGGCGGTGTGTACGGGGTCGCCTGGAAGC
CGGACGGTACGCAGCTGCTGACCTGCTCGGGCGACAAGTCCTGCCGGCTGTGGGACGTGG
CGACGCGCACGCTCATCAGCGAGTTCCCGATGGGCAGCACGGTCGACGATCAGCAGGTGT
CGTGTCTGTGGCAGGGCGACCACATCCTGTCCGTGTCGCTGTCCGGGTTCATCAACTACC
TCGATGTGAACAATCCCACCAAACCGCTGCGCATCGTGAAGGGCCACAACAAGCCGATCA
CGGTGCTGACGCTGAGCGACGATCGCAGCACGATCTACA

consensusID : consensus_4078#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [CCGCGGACGCGTGGGGCCGTGCGGTGTACGTGTGTATGTACTGCTTGTGCCCCAACAACAACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTCACTGAACTGCAATCATGGCCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACACAGCCGAGGCCAACCGATCGTGCTGGGCGGTGATCCGAAGGGCAAGAACTTCCTCTACACCAACGGCCATTCGGTGATTATCCGCAACATCGATAATCCGGAAATTGCGGACATCTACACGGAACACTCGTGCGCGGTGAACGTGGCCAAGTACTCGCCGAGCGGGTTCTACATCGCCTCCGGCGACGCGTCGGGCAAGATCCGCATCTGGGACACGGTAAATAAGGAGCACATACTGAAGAATGAGTTCCAGCCGATCGGG]

[+] EMBL BM599491             [CCGCGGACGCGTGGGGCCGTGCGGTGTACGTGTGTATGTACTGCTTGTGCCCCAACAACAACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTCACTGAACTGCAATCATGGCCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACACAGCCGAGGCCAACCGATCGTGCTGGGCGGTGATCCGAAGGGCAAGAACTTCCTCTACACCAACGGCCATTCGGTGATTATCCGCAACATCGATAATCCGGAAATTGCGGACATCTACACGGAACACTCGTGCGCGGTGAACGTGGCCAAGTACTCGCCGAGCGGGTTCTACATCGCCTCCGGCGACGCGTCGGGCAAGATCCGCATCTGGGACACGGTAAATAAGGAGCACATACTGAAGAATGAGTTCCAGCCGATCGGG]




>consensus_4078#2
CCGCGGACGCGTGGGGCCGTGCGGTGTACGTGTGTATGTACTGCTTGTGCCCCAACAACA
ACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTCA
CTGAACTGCAATCATGGCCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACAC
AGCCGAGGCCAACCGATCGTGCTGGGCGGTGATCCGAAGGGCAAGAACTTCCTCTACACC
AACGGCCATTCGGTGATTATCCGCAACATCGATAATCCGGAAATTGCGGACATCTACACG
GAACACTCGTGCGCGGTGAACGTGGCCAAGTACTCGCCGAGCGGGTTCTACATCGCCTCC
GGCGACGCGTCGGGCAAGATCCGCATCTGGGACACGGTAAATAAGGAGCACATACTGAAG
AATGAGTTCCAGCCGATCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4078#0      ---------------CCGGTGC-GGTGTACGTGTGTATGTACTGCTTGTGCC--AACAAC 42
consensus_4078#2      CCGCGGACGCGTGGGGCCGTGC-GGTGTACGTGTGTATGTACTGCTTGTGCCCCAACAAC 59
consensus_4078#1      -------CCGGCCAATCGAAGCCGATCAATTCGTGCGATTTCCGCCCG-GCCCGCCCGTT 52
                                      *   ** * *  *   ***    * * **  * ***    *   

consensus_4078#0      AACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTC 102
consensus_4078#2      AACCAATTTCTCCGTGTGCAACAAATTCACGAACTATTTTAGCTGGAATAAATCCGTTTC 119
consensus_4078#1      CCGCATCGTGACCGGCAGTGAGGACAACACGATCGGCGT-GTTCGAGGGACCGCCGTTCA 111
                         **   *  ***   *  *  *   ***** *    *     *    *   *****  

consensus_4078#0      ACTGAACTGCAATCATGGCC-TATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACA 161
consensus_4078#2      ACTGAACTGCAATCATGGCCCTATTCGAATAAGTTCATTTACGCAACGTTGCCGCGAACA 179
consensus_4078#1      AGTTCAAGATGACCA-AGCAGGACCACACCCGGTTCGTGCAGGCGGTGC-GCTACTCGCC 169
                      * *  *     * **  **   *    *    **** *  * **   *  **  *   * 

consensus_4078#0      CAGC-GAGGCCAACCGATCGTGCTGGGTGGTGATCCGAAGAGCAAGAACTTCCTCTACAC 220
consensus_4078#2      CAGCCGAGGCCAACCGATCGTGCTGGGCGGTGATCCGAAGGGCAAGAACTTCCTCTACAC 239
consensus_4078#1      GAGC---GGCCACCTGTTCGCTTCGGCCG--GGTTCGATG-GCAAGGTGTTCATCTACGA 223
                       ***   ***** * * ***    **  *  * * *** * *****   *** *****  

consensus_4078#0      CAACGGGCATTCCGTGATTATCCGCAACATCGATAATCCCGAA-ATTGCGGACATCTACA 279
consensus_4078#2      CAACGGCCATTCGGTGATTATCCGCAACATCGATAATCCGGAA-ATTGCGGACATCTACA 298
consensus_4078#1      CGGTACCACGTCCGAGCTGGTCGGTGAGGTGGGCTCGCCGGCGCACAGTGGCGGTGTGTA 283
                      *         ** * * *  ** *  *  * *     ** *   *  * **   * *  *

consensus_4078#0      CCGAACACTCCTGCGCGGTGAACG-TGGGCAAGTACTCGCCCA---GGGGGGTCTACATT 335
consensus_4078#2      CGGAACACTCGTGCGCGGTGAACG-TGGCCAAGTACTCGCCGA---GCGGGTTCTACATC 354
consensus_4078#1      CGGGGT-CGCCTGGAAGCCGGACGGTACGCAGCTGCTGACCTGCTCGGGCGACAAGTCCT 342
                      * *    * * **   *  * *** *   **  * **  **     * * *         

consensus_4078#0      GC--GTTCCGGGACGCGTCTGGGAAAATTCCCATCTGGGGACACCGGGGAACCAGGAACC 393
consensus_4078#2      GC--CTCCGGCGACGCGTCGGGCAAGATCCGCATCTGGG-ACAC-GGTAAATAAGGAGCA 410
consensus_4078#1      GCCGGCTGTGGGACGTGGCGACGCGCACGCTCATCAGCGAGTTCCCGATGGGCAGCACGG 402
                      **       * **** * *       *  * **** * *    *  *      ** *   

consensus_4078#0      C-TACTGGAAAATGAATTTCCCCCCCATTGGGGGGCCCAATCAAGGACATCTCCTGGTCG 452
consensus_4078#2      CATACTGAAGAATGAGTT-CCAGCCGATCGGG---------------------------- 441
consensus_4078#1      T-CGACGATCAGCAGGTGTCGTGTCTGTGGCAGGGCGACCACATCCTGTCCGTGTCGCTG 461
                            *   *     *  *    *  * *                              

consensus_4078#0      CCCGACAGCCAGCGGATCGTGATCGTGGGCGAGGGCCTGGGAAGCGGTTCGGGCACGTGT 512
consensus_4078#2      ------------------------------------------------------------
consensus_4078#1      TCCGG--GTTCATCAACTACCTCGATGTGAACAATCCCACCAAACCGCTGCGCATCGTGA 519
                                                                                  

consensus_4078#0      TTATGGCGGAAACGGGCACCTCGGTGGGCGAGATTTCGGGCCAATCGAAGCCGATTAATT 572
consensus_4078#2      ------------------------------------------------------------
consensus_4078#1      AGGGCCACAACAAGCCGATCACGGTGCTGACGCTGAGCGACGATCGCAGCACGATCTACA 579
                                                                                  

consensus_4078#0      CGTGCGATTTCCGGCCGGCCCGCCCGTTCCGTATCATCACTGGCAGCGAGGACAACACGA 632
consensus_4078#2      ------------------------------------------------------------
consensus_4078#1      ------------------------------------------------------------
                                                                                  

consensus_4078#0      ATCGGCGTGTTCGAAGGGCCGCCGTTCAAGTTCAAGATGAC 673
consensus_4078#2      -----------------------------------------
consensus_4078#1      -----------------------------------------