cluster # 409

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Anopheles gambiae
cluster # 409 cluster # 409 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_409#0 length = 796 sequences # 1

consensus_409#1 length = 617 sequences # 1

consensusID : consensus_409#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 796
fasta sequence

                              [GCAGAATCGCGCACGAGGTCTATACGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATTGTCTGCCCGGAGCATTACAATCCGTCCGATTATTTGTTAGAAATAGCAACGCACGACTACGGCCGGCTGAACGACAGCCTGGTGGAAAAGATGATGAACGGGCAGAGCAACTTCTACCGCAATCCGGAACCGTTCGCGCCGACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCGGACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAGCGACGACGCCCGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAGCTGTCGTTCAACCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGCCGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTGATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTCGGGATCGGTAATCAGGCGGCGCAGATCTTCAACAACTACAACTACGTGTTCTTCTCGATCATGTTCTGATGTTTNACCGCGTTCAGGCTCAATGACCATTGGCGTTTCCACTCGAAGCTTGCCGATCATTACCGCGGGGAGGCACTTTTAAACCCGCTGGTACTCGGTTTGACGGGCGTTACTTACANTCGCCNATGACACGGGTGGCCGACAATTCCGGATCCANGCATGTCTGNACCNGGC]

[+] EMBL BX467428             [GCAGAATCGCGCACGAGGTCTATACGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATTGTCTGCCCGGAGCATTACAATCCGTCCGATTATTTGTTAGAAATAGCAACGCACGACTACGGCCGGCTGAACGACAGCCTGGTGGAAAAGATGATGAACGGGCAGAGCAACTTCTACCGCAATCCGGAACCGTTCGCGCCGACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCGGACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAGCGACGACGCCCGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAGCTGTCGTTCAACCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGCCGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTGATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTCGGGATCGGTAATCAGGCGGCGCAGATCTTCAACAACTACAACTACGTGTTCTTCTCGATCATGTTCTGATGTTTNACCGCGTTCAGGCTCAATGACCATTGGCGTTTCCACTCGAAGCTTGCCGATCATTACCGCGGGGAGGCACTTTTAAACCCGCTGGTACTCGGTTTGACGGGCGTTACTTACANTCGCCNATGACACGGGTGGCCGACAATTCCGGATCCANGCATGTCTGNACCNGGC]




>consensus_409#0
GCAGAATCGCGCACGAGGTCTATACGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGA
GCTCGACATTGTCTGCCCGGAGCATTACAATCCGTCCGATTATTTGTTAGAAATAGCAAC
GCACGACTACGGCCGGCTGAACGACAGCCTGGTGGAAAAGATGATGAACGGGCAGAGCAA
CTTCTACCGCAATCCGGAACCGTTCGCGCCGACGTTCGAGAGCAAGCTGCTGCCGATCAA
GGAATCGTCCCCGGACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGA
CAGCGACGACGCCCGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAA
ACTCGCCAAAAAGCTGTCGTTCAACCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACAC
CACCAGCTTCTGCCGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCG
GGATCGGTCGCTGATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGG
GATGCTGTACTTCGGGATCGGTAATCAGGCGGCGCAGATCTTCAACAACTACAACTACGT
GTTCTTCTCGATCATGTTCTGATGTTTNACCGCGTTCAGGCTCAATGACCATTGGCGTTT
CCACTCGAAGCTTGCCGATCATTACCGCGGGGAGGCACTTTTAAACCCGCTGGTACTCGG
TTTGACGGGCGTTACTTACANTCGCCNATGACACGGGTGGCCGACAATTCCGGATCCANG
CATGTCTGNACCNGGC

consensusID : consensus_409#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence

                              [CAACCGTCCGCGCTGCTGTTCAACATGTTTGACCATCTGTACGCGGTCGCGGAGGGCGAATGCATCTATACCGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATCGTCTGCCCTGAGCATTACAATCCGTCCGATTACTTGTTAGAAATAGCAACGCACGACTACGGCCGGCTGAACGACAGTCTGGTAGAAAAAATGATGAACGGGCAGAGCAACTTCTACCGCAATCCGGAACCATTCTCGCCAACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCGGACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAACGGCGACGCCCGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAGCTGTCGTTCAATCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGCCGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTGATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTCGGGATCGGTAATCAGGC]

[+] EMBL BX602059             [CAACCGTCCGCGCTGCTGTTCAACATGTTTGACCATCTGTACGCGGTCGCGGAGGGCGAATGCATCTATACCGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATCGTCTGCCCTGAGCATTACAATCCGTCCGATTACTTGTTAGAAATAGCAACGCACGACTACGGCCGGCTGAACGACAGTCTGGTAGAAAAAATGATGAACGGGCAGAGCAACTTCTACCGCAATCCGGAACCATTCTCGCCAACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCGGACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAACGGCGACGCCCGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAGCTGTCGTTCAATCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGCCGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTGATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTCGGGATCGGTAATCAGGC]




>consensus_409#1
CAACCGTCCGCGCTGCTGTTCAACATGTTTGACCATCTGTACGCGGTCGCGGAGGGCGAA
TGCATCTATACCGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATCGTC
TGCCCTGAGCATTACAATCCGTCCGATTACTTGTTAGAAATAGCAACGCACGACTACGGC
CGGCTGAACGACAGTCTGGTAGAAAAAATGATGAACGGGCAGAGCAACTTCTACCGCAAT
CCGGAACCATTCTCGCCAACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCG
GACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAACGGCGACGCC
CGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAG
CTGTCGTTCAATCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGC
CGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTG
ATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTC
GGGATCGGTAATCAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_409#0      ----------------------------------------GCAGAATCGCGCACGAGG-- 18
consensus_409#1      CAACCGTCCGCGCTGCTGTTCAACATGTTTGACCATCTGTACGCGGTCGCGGAGGGCGAA 60
                                                              *    ***** * *  *  

consensus_409#0      ----TCTATAC-GGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATTGTC 73
consensus_409#1      TGCATCTATACCGGTGGCACCGGGAACATTGTGTCGTTCCTGAAGGAGCTCGACATCGTC 120
                         ******* ******************************************** ***

consensus_409#0      TGCCCGGAGCATTACAATCCGTCCGATTATTTGTTAGAAATAGCAACGCACGACTACGGC 133
consensus_409#1      TGCCCTGAGCATTACAATCCGTCCGATTACTTGTTAGAAATAGCAACGCACGACTACGGC 180
                     ***** *********************** ******************************

consensus_409#0      CGGCTGAACGACAGCCTGGTGGAAAAGATGATGAACGGGCAGAGCAACTTCTACCGCAAT 193
consensus_409#1      CGGCTGAACGACAGTCTGGTAGAAAAAATGATGAACGGGCAGAGCAACTTCTACCGCAAT 240
                     ************** ***** ***** *********************************

consensus_409#0      CCGGAACCGTTCGCGCCGACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCG 253
consensus_409#1      CCGGAACCATTCTCGCCAACGTTCGAGAGCAAGCTGCTGCCGATCAAGGAATCGTCCCCG 300
                     ******** *** **** ******************************************

consensus_409#0      GACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAGCGACGACGCC 313
consensus_409#1      GACGGACCAATGGTGCTGCTCGAGATGCCCCTGTTTCCCGAGCACGACAACGGCGACGCC 360
                     ************************************************* ** *******

consensus_409#0      CGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAG 373
consensus_409#1      CGCAACCAGCAGCGGCCCGTCTCGCCCGTGCTGGCCACGCCAAAGAAACTCGCCAAAAAG 420
                     ************************************************************

consensus_409#0      CTGTCGTTCAACCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGC 433
consensus_409#1      CTGTCGTTCAATCCGGAGCGGTGGTGCGGTCGGGATGAGATCTACACCACCAGCTTCTGC 480
                     *********** ************************************************

consensus_409#0      CGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTG 493
consensus_409#1      CGGCAGTTTTCGCTGCTGCTGCTCCGCACCTTTCTCATACTGAGCCGGGATCGGTCGCTG 540
                     ************************************************************

consensus_409#0      ATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTC 553
consensus_409#1      ATGACGATGCGGTTCGCGATCCACTGTCTGATTGCGCCACTGATCGGGATGCTGTACTTC 600
                     ************************************************************

consensus_409#0      GGGATCGGTAATCAGGCGGCGCAGATCTTCAACAACTACAACTACGTGTTCTTCTCGATC 613
consensus_409#1      GGGATCGGTAATCAGGC------------------------------------------- 617
                     *****************                                           

consensus_409#0      ATGTTCTGATGTTTNACCGCGTTCAGGCTCAATGACCATTGGCGTTTCCACTCGAAGCTT 673
consensus_409#1      ------------------------------------------------------------
                                                                                 

consensus_409#0      GCCGATCATTACCGCGGGGAGGCACTTTTAAACCCGCTGGTACTCGGTTTGACGGGCGTT 733
consensus_409#1      ------------------------------------------------------------
                                                                                 

consensus_409#0      ACTTACANTCGCCNATGACACGGGTGGCCGACAATTCCGGATCCANGCATGTCTGNACCN 793
consensus_409#1      ------------------------------------------------------------
                                                                                 

consensus_409#0      GGC 796
consensus_409#1      ---