|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 889 fasta sequence
[GGCAAAGTTTTCTTTTATTGGTGTGTTGCCACTGATAGTACAAACGATATTCTAACACGAGCGTTGGCGTTGGTGTAACAGTAGCAGACTTCCCCAATCATTGGAGTTGAGAAGAAGATGAAACGAAGCGTCTTGCTCCCCGTGGAGGCGATAACACTTTGAGGTGTGCGAGGAAAACCAATTCTGCAATCAAGATTGTGAAAAAAACAAACGACCGTCTTAATCGAATATATCAATTTATACTAGATACCTATACTACAACTGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCCACCGTTTCACGTAATCCATTTCAGCAGTCCTAATCATAGAGCGTAATGTTGTACTTAGCGAATCTCTCAAATACGCACCTTTGTGAAGCAAAACTAAAACTCACACCCACACACAACCACACACACACACACACACACACACACAAACATATTCAGACTTTGTACTCCTATAACTTGTTTCTCCAGTTTGAACCAATTTGTAGCCGGATACCGTTACACCGTACTTTAGGATATACTGTTTGCTGCCAGCCAGGCCATGGTGCGTGTGTGACAAGTGAAACGTGTTGAACTGTTCGTTCCCATATCCCTTAAACACGTTCGAATAGGATGGTTTGAGTGTTCAGAAAAATAGGTCATACAAACAAAATCGTTCTCCAAGCCATAAAAGACGACTTTTGTGTTGCGTGTTGCATAACTTCGGGCGCTTTAGTGTGGTCGTTTCGGAGTTATGCAAATTGCACTATCGAAATCGTCAGGTTATGGGGTTTGGGTTAACGATTTTTTTTGTGTTTTCTGGCAAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACAGATTTCCAACTCCATTATGGTCGTGGTT]
[+] EMBL BX613408 [GGCAAAGTTTTCTTTTATTGGTGTGTTGCCACTGATAGTACAAACGATATTCTAACACGAGCGTTGGCGTTGGTGTAACAGTAGCAGACTTCCCCAATCATTGGAGTTGAGAAGAAGATGAAACGAAGCGTCTTGCTCCCCGTGGAGGCGATAACACTTTGAGGTGTGCGAGGAAAACCAATTCTGCAATCAAGATTGTGAAAAAAACAAACGACCGTCTTAATCGAATATATCAATTTATACTAGATACCTATACTACAACTGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCCACCGTTTCACGTAATCCATTTCAGCAGTCCTAATCATAGAGCGTAATGTTGTACTTAGCGAATCTCTCAAATACGCACCTTTGTGAAGCAAAACTAAAACTCACACCCACACACAACCACACACACACACACACACACACACACAAACATATTCAGACTTTGTACTCCTATAACTTGTTTCTCCAGTTTGAACCAATTTGTAGCCGGATACCGTTACACCGTACTTTAGGATATACTGTTTGCTGCCAGCCAGGCCATGGTGCGTGTGTGACAAGTGAAACGTGTTGAACTGTTCGTTCCCATATCCCTTAAACACGTTCGAATAGGATGGTTTGAGTGTTCAGAAAAATAGGTCATACAAACAAAATCGTTCTCCAAGCCATAAAAGACGACTTTTGTGTTGCGTGTTGCATAACTTCGGGCGCTTTAGTGTGGTCGTTTCGGAGTTATGCAAATTGCACTATCGAAATCGTCAGGTTATGGGGTTTGGGTTAACGATTTTTTTTGTGTTTTCTGGCAAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACAGATTTCCAACTCCATTATGGTCGTGGTT]
[+] EMBL BX618401 [ AACGACCGTCTTAATCGAATATATCAATTTATACTAGATACCTATACTACAACGGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCCACCGTTTCACGTAATCCATTTCAGCAGTCCAAATCATAGAGCGTAATGGTGTACTTAGCGAAACTCTCAAATACGCACCTTTGTGga ]
consensusID : consensus_4096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CCCGAGGTTATATTGTTGTGTTTTCTGGCAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACTGATATCCAACTCCATTATGGTCGTGGTTCCGGTTTATTGAAGCAAAACAACACATAATACAACACTTACAACGAGTAGTAAACTGTTTCTATTGGAGCGCAGTCGCATAGAATGCGATTGTAGAACGATTGGCTGTTTCATGCAAATTTTGGTTTTAAAGGGTGCGAAAGATAGGAAGAGTGTCAGTATACATGTTTCAAATCCAATGTCAGCGATAGTTATCTGTTTGCGTTATGGTTAGTGCTGCCAGCCGTATTGAAGATACTGAAGAAGCACTGAGAAAGGGCAGAAATGGACATTGCATAATATGGTGAAATTGGTGGTTGTAGTTTACCACCATGCTGCAACATGTGCAAGACATGCGTCTATCATTTTTCTAAACTACACACACACACACACACACACACTACGTACATGGGAAGCGAGTGATTACTAGTTCTGATTCACTATAACATGANATAATGTACTTGACGAACACGGAAAAAAAGTCGACGAAACACAGAAGAGGACAACCCCCAATTTTCTAATCCGCAAAACGCATTCCCCACCAACCACACATGAACAATGATGCATCGACACCNATCACGATGATGATGAACAAGAAAAAAGCANAACA]
[+] EMBL AL933545 [CCCGAGGTTATATTGTTGTGTTTTCTGGCAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACTGATATCCAACTCCATTATGGTCGTGGTTCCGGTTTATTGAAGCAAAACAACACATAATACAACACTTACAACGAGTAGTAAACTGTTTCTATTGGAGCGCAGTCGCATAGAATGCGATTGTAGAACGATTGGCTGTTTCATGCAAATTTTGGTTTTAAAGGGTGCGAAAGATAGGAAGAGTGTCAGTATACATGTTTCAAATCCAATGTCAGCGATAGTTATCTGTTTGCGTTATGGTTAGTGCTGCCAGCCGTATTGAAGATACTGAAGAAGCACTGAGAAAGGGCAGAAATGGACATTGCATAATATGGTGAAATTGGTGGTTGTAGTTTACCACCATGCTGCAACATGTGCAAGACATGCGTCTATCATTTTTCTAAACTACACACACACACACACACACACACTACGTACATGGGAAGCGAGTGATTACTAGTTCTGATTCACTATAACATGANATAATGTACTTGACGAACACGGAAAAAAAGTCGACGAAACACAGAAGAGGACAACCCCCAATTTTCTAATCCGCAAAACGCATTCCCCACCAACCACACATGAACAATGATGCATCGACACCNATCACGATGATGATGAACAAGAAAAAAGCANAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4096#0 GGCAAAGTTTTCTTTTATTGGTGTGTTGCCACTGATAGTACAAACGATATTCTAACACGA 60
consensus_4096#1 -------------------------------------------------------CCCGA 5
* ***
consensus_4096#0 GCGTTGGCGTTGGTGTAACAGTAGCAGACTTCCCCAATCATTGGAGTTGAGAAGAAGATG 120
consensus_4096#1 G-GTTA-TATTGTTGTGTTTTCTGGCAAGGCTACCTACCACCTTACCTGGCATAGAAAAC 63
* *** *** *** * * ** * ** * ** * * *
consensus_4096#0 AAACGAAGCGTCTTGCT-CCCCGTGGAGGCGATAACACTTTGAGGTGTGCGAGGAAAACC 179
consensus_4096#1 AAACAAACTGATATCCAACTCCATTATGGTCGTGG---TTCCGGTTTATTGAAGCAAAAC 120
**** ** * * * * ** * ** * ** * * ** * *** *
consensus_4096#0 AATTCTGCAATCAAGATTGTGAAAAAAACAAACGACCGTCTTAATCGAATATATCAATTT 239
consensus_4096#1 AACACATAATACAACACT-TACAACGAGTAGTAAACTGTTTCTATTGGA-GCGCAGTCGC 178
** * * *** * * * ** * * ** ** * ** * *
consensus_4096#0 ATACTAGATACCTATACTACAACTGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCC 299
consensus_4096#1 ATAGAATGCGATTGTAGAACGATTGGCTGTTTCATGCAAATTTTGGTTTTAAAGGGTGCG 238
*** * * ** ** * *** ** * * * * **
consensus_4096#0 ACCGTTTCACGTAAT-CCATTTCAGCAGTCCTAATCATAGAGCGTAATGTTGTACTTAGC 358
consensus_4096#1 AAAGATAGGAAGAGTGTCAGTATACATGTTTCAA--ATCCAATGTCA-GCGATAGTTATC 295
* * * * * ** * * ** ** ** * ** * * ** *** *
consensus_4096#0 GAATCTCTCAAATACGCACCTTTGTGAAGCAAAACTAAAACTCACACCCACACACAACCA 418
consensus_4096#1 TG-TTTGCGTTATGGTTAGTGCTGCCA-GCCGTATTGAAG---ATACTGAAGAAGCACTG 350
* * ** * ** * ** * * ** * ** * * **
consensus_4096#0 CACACACACACACACACACACACACAAACATATTCAGACTTTGTACTCCTATAACTTGTT 478
consensus_4096#1 AGAAAGGGCAGAAATGGACATTGCATAATATGGTGAAA-TTGGTGGT--TGTAGTTTA-- 405
* ** * * *** ** ** * * * ** ** * * ** **
consensus_4096#0 TCTCCAGTTTGAACCAATTTGTAGCCGGATACCGTTACACCGTACTTTAGGATATACTGT 538
consensus_4096#1 ---CCACCATGCTGCAACATGT-GCAAGACATGCGTCTATCATTTTTC----TAAACTAC 457
*** ** *** *** ** ** * * * * * ** ** ***
consensus_4096#0 TTGCTGCCAGCCAGGC-CATGGTGCGTGTGTGACAAGTGAAACGTGTTGAACTGTTCGTT 597
consensus_4096#1 ACACACACACACACACACACACTACGTACATGGGAAGCGA---GTG----ATTACTAGTT 510
* ** ** * ** * *** ** *** ** *** * * * ***
consensus_4096#0 CCCATATCCCTTAAACACGTTCGAATAGGATGGTTTGAGTGTTCAGAAAAATAGGTCATA 657
consensus_4096#1 CTGAT-TCACTATAACATG---ANATAATGTACTTGACGAACACGGAAAAA-AAGTCGAC 565
* ** ** ** **** * *** * ** * * ****** * ***
consensus_4096#0 CAAACAAAATCGTTCTCCAAGCCATAAAAGACGACTTTTGTGTTGCGTGTTGCATAACTT 717
consensus_4096#1 GAAACACAG---------AAGAGGACAACCCCCAATTTTCTAATCCGCAAAACGCATTCC 616
***** * *** ** * * **** * * ** * *
consensus_4096#0 CGGGCGCTTTAGTGTGGTCGTTTCGGAGTTATGCAAATTGCACTATCGAAATCGTCAGGT 777
consensus_4096#1 CCACCAACCACACATGAACAATGATGCATCG-ACACCNATCACGATGATGATGAACAAGA 675
* * ** * * * * ** *** ** ** ** *
consensus_4096#0 TATGGGGTTTGGGTTAACGATTTTTTTTGTGTTTTCTGGCAAAGGCTACCTACCACCTTA 837
consensus_4096#1 AAAAAGCANAACA----------------------------------------------- 688
* *
consensus_4096#0 CCTGGCATAGAAAACAAACAAACAGATTTCCAACTCCATTATGGTCGTGGTT 889
consensus_4096#1 ----------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||