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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence
[AATCGCCCGAGGTAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTTTTTTAATTGGTGTGATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATCCATCCATCACACGATTTCGATCGATCTTTGATGCAGCAGGTGCGTTCTGGTGGCTATATTCTGCTCTGGCACCAAGTCATTGTCGTTGGCAAGAAAGAAAGTCACTTGTATAAAGGANGCGGGTTCTGCTGCAAATCTAGCCAANAAAAGCNACCAAATTACCCGGTCAAGATTGGTTCACACAAATTATGGAATGGCCCTGTCGCATTAATTCGTNAAACNGTTGGGACTGAACCGAATCCCTTGGGTTCCGAACCTCCACGGCCNCGCGCGTACNGGCAAGNGAAAATCCCCCATNGTGTAANCGCCCTANGCAACAACCCGGGGCAAACTTAACCCGGGGGAAAAANACGCGTTGGCCNGTGTGTGACCAATGTCGCGCGCTTTCCGCCCATTGTTGAACATTTTTCCCCAACACGTCGT]
[+] EMBL AL932410 [AATCGCCCGAGGTAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTTTTTTAATTGGTGTGATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATCCATCCATCACACGATTTCGATCGATCTTTGATGCAGCAGGTGCGTTCTGGTGGCTATATTCTGCTCTGGCACCAAGTCATTGTCGTTGGCAAGAAAGAAAGTCACTTGTATAAAGGANGCGGGTTCTGCTGCAAATCTAGCCAANAAAAGCNACCAAATTACCCGGTCAAGATTGGTTCACACAAATTATGGAATGGCCCTGTCGCATTAATTCGTNAAACNGTTGGGACTGAACCGAATCCCTTGGGTTCCGAACCTCCACGGCCNCGCGCGTACNGGCAAGNGAAAATCCCCCATNGTGTAANCGCCCTANGCAACAACCCGGGGCAAACTTAACCCGGGGGAAAAANACGCGTTGGCCNGTGTGTGACCAATGTCGCGCGCTTTCCGCCCATTGTTGAACATTTTTCCCCAACACGTCGT]
consensusID : consensus_4107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[CCGAAACGGGTCTTGCATGACTTGAAACAGAAGACCGTTTTAGGCAAAGGGCCGGACCGATACGAGATTGCGAAAGATGCGCGTGTGTGTGGCGTTTGCGTTAACGTCATTGACAGAACACAAAAAAACCATGTTCAACGATATGGCGAACCGTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGGTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGCTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATTCATCCATCACACGATTTCGATCGATTTGGTG]
[+] EMBL BM630125 [CCGAAACGGGTCTTGCATGACTTGAAACAGAAGACCGTTTTAGGCAAAGGGCCGGACCGATACGAGATTGCGAAAGATGCGCGTGTGTGTGGCGTTTGCGTTAACGTCATTGACAGAACACAAAAAAACCATGTTCAACGATATGGCGAACCGTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGGTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGCTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATTCATCCATCACACGATTTCGATCGATTTGGTG]
consensusID : consensus_4107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[ATCCCCCGAGGTTAAGATGCGCGTGTGTATGGCGTTTGCGTTACGTCATTGACAGAACACAAAAAACCATGTTCAACGATATGGCGTACCTTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTTTTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTGTCTTCTTTTTTTTAATTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATTAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAATGCAGCGCGACGATTTATCCATCACACGATTTCGATCGATTTGGTGAG]
[+] EMBL AL931575 [ATCCCCCGAGGTTAAGATGCGCGTGTGTATGGCGTTTGCGTTACGTCATTGACAGAACACAAAAAACCATGTTCAACGATATGGCGTACCTTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTTTTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTGTCTTCTTTTTTTTAATTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATTAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAATGCAGCGCGACGATTTATCCATCACACGATTTCGATCGATTTGGTGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4107#1 CCGAAACGGGTCTTGCATGACTTGAAACAGAAGACCGTTTTAGGCAAAGGGCCGGACCGA 60
consensus_4107#2 -------------------------------------------------------ATCCC 5
consensus_4107#0 ------------------------------------------------------------
consensus_4107#1 TACGAGATTGCGAAAGATGCGCGTGTGTGTGGCGTTTGCGTTAACGTCATTGACAGAACA 120
consensus_4107#2 C-CGAGGTT----AAGATGCGCGTGTGTATGGCGTTTGCGTTA-CGTCATTGACAGAACA 59
consensus_4107#0 ------------------------------------------------------------
consensus_4107#1 CAAAAAAACCATGTTCAACGATATGGCGAACCGTAAAATATGTAGGAATCTACAATAAAA 180
consensus_4107#2 CAAAAAA-CCATGTTCAACGATATGGCGTACCTTAAAATATGTAGGAATCTACAATAAAA 118
consensus_4107#0 ----------------------------------------------------------AA 2
**
consensus_4107#1 AGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTA 240
consensus_4107#2 AGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTTTTTGATCGTGCCGTTA 178
consensus_4107#0 TCGCC--CGAGGTAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTA 60
*** * ****************************** ****************
consensus_4107#1 GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC 300
consensus_4107#2 GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC 238
consensus_4107#0 GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC 120
************************************************************
consensus_4107#1 TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTT---------G 351
consensus_4107#2 TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTT-GTCTTCTTTTTTTT--AATTG 295
consensus_4107#0 TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTTTTTTAATTG 180
************************************** *********** *
consensus_4107#1 GTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGGTGT 411
consensus_4107#2 GTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGT 355
consensus_4107#0 GTGTGATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGT 240
**** *************************************************** ***
consensus_4107#1 TTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGCTTCTGTAATCAGTTTATAAAATC 471
consensus_4107#2 TTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATT 415
consensus_4107#0 TTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATC 300
************************************ **********************
consensus_4107#1 AGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCG 531
consensus_4107#2 AGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAATGCAGCGCG 475
consensus_4107#0 AGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCG 360
************************************************** *********
consensus_4107#1 ACGATTCATCCATCACACGATTTCGATCGAT--TTGGTG--------------------- 568
consensus_4107#2 ACGATTTATCCATCACACGATTTCGATCGAT--TTGGTGAG------------------- 514
consensus_4107#0 ACGATCCATCCATCACACGATTTCGATCGATCTTTGATGCAGCAGGTGCGTTCTGGTGGC 420
***** ************************ *** **
consensus_4107#1 ------------------------------------------------------------
consensus_4107#2 ------------------------------------------------------------
consensus_4107#0 TATATTCTGCTCTGGCACCAAGTCATTGTCGTTGGCAAGAAAGAAAGTCACTTGTATAAA 480
consensus_4107#1 ------------------------------------------------------------
consensus_4107#2 ------------------------------------------------------------
consensus_4107#0 GGANGCGGGTTCTGCTGCAAATCTAGCCAANAAAAGCNACCAAATTACCCGGTCAAGATT 540
consensus_4107#1 ------------------------------------------------------------
consensus_4107#2 ------------------------------------------------------------
consensus_4107#0 GGTTCACACAAATTATGGAATGGCCCTGTCGCATTAATTCGTNAAACNGTTGGGACTGAA 600
consensus_4107#1 ------------------------------------------------------------
consensus_4107#2 ------------------------------------------------------------
consensus_4107#0 CCGAATCCCTTGGGTTCCGAACCTCCACGGCCNCGCGCGTACNGGCAAGNGAAAATCCCC 660
consensus_4107#1 ------------------------------------------------------------
consensus_4107#2 ------------------------------------------------------------
consensus_4107#0 CATNGTGTAANCGCCCTANGCAACAACCCGGGGCAAACTTAACCCGGGGGAAAAANACGC 720
consensus_4107#1 ------------------------------------------------------------
consensus_4107#2 ------------------------------------------------------------
consensus_4107#0 GTTGGCCNGTGTGTGACCAATGTCGCGCGCTTTCCGCCCATTGTTGAACATTTTTCCCCA 780
consensus_4107#1 ---------
consensus_4107#2 ---------
consensus_4107#0 ACACGTCGT 789
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||