cluster # 4116

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Anopheles gambiae
cluster # 4116 cluster # 4116 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4116#0 length = 1056 sequences # 2

consensus_4116#1 length = 593 sequences # 1

consensusID : consensus_4116#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1056
fasta sequence

                              [AAAGCTTGATTCCTTGATTCCTGAGGCTCACCACCAAAACCGATTGTTGTTGTGCGGTATTGGTAGACCACAAACAAGTTCTCTAATTTTAATAGCTTCCCGATGATTGAGTGGTTAAGTTTTTTTCTTTTCAATACTCACACCAGCATCTTCGAAGCGCTCAATTTTGCTCCCTTTGACATCATTTTTGGCTCCCATCTTACACAGGCATGGCCAAATGTATGGCAAACATCTCTTCTCGCTCTTGACGCCAGTGTGTCAATCTTCTTGCACTGCAATATATAAACCAGAGTGTGTAGGGTTTTTTTGTTGTAAAATCAAAATAACTTACTGCGTTGGCTGTAAAAGCACAGCGTCGAAATTACGCTTTCATCTATATATAAATAATAACAATTTTAAGTACCGTTCACAATCGCAATCGCCAGAGCAGGCGAAGCTTTTAATAAACATTCACTGTAAATAGCATTGAGTAGTGTGAAATAATCACAACCGGGGTGAGCATCTGTAGCGCAGGAATGAGTTTTCCTTTCATAAGATGTGGTTGTCTGACTGTGTGCGTGTTGTGACGGAAGGTGTTGTTCAGTGAAACGATAGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAATGTCCCAGTAAATACGTAAACGGNTAAATGGATTCAAATGAGTTGTTGTTAGCAGAGAAGCTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGAAAACTAAGATCCCTCGTCCAGTACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTGTTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAATACAGAGTAACATTTACTACTATCCACAGCGCCACATAAACAAGATATATATCTATTTAACACACGAAATCGATAACTGTACCTGATTAAAACAAAAGCAAACACAGAAACACACACCCACACACGCGGGGGTGCGGTTTTTTGGCGTTCATTTCTAC]

[+] EMBL BX626684             [AAAGCTTGATTCCTTGATTCCTGAGGCTCACCACCAAAACCGATTGTTGTTGTGCGGTATTGGTAGACCACAAACAAGTTCTCTAATTTTAATAGCTTCCCGATGATTGAGTGGTTAAGTTTTTTTCTTTTCAATACTCACACCAGCATCTTCGAAGCGCTCAATTTTGCTCCCTTTGACATCATTTTTGGCTCCCATCTTACACAGGCATGGCCAAATGTATGGCAAACATCTCTTCTCGCTCTTGACGCCAGTGTGTCAATCTTCTTGCACTGCAATATATAAACCAGAGTGTGTAGGGTTTTTTTGTTGTAAAATCAAAATAACTTACTGCGTTGGCTGTAAAAGCACAGCGTCGAAATTACGCTTTCATCTATATATAAATAATAACAATTTTAAGTACCGTTCACAATCGCAATCGCCAGAGCAGGCGAAGCTTTTAATAAACATTCACTGTAAATAGCATTGAGTAGTGTGAAATAATCACAACCGGGGTGAGCATCTGTAGCGCAGGAATGAGTTTTCCTTTCATAAGATGTGGTTGTCTGACTGTGTGCGTGTTGTGACGGAAGGTGTTGTTCAGTGAAACGATAGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAATGTCCCAGTAAATACGTAAACGGNT                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX602986             [                                                                                                                                                                                                                                                                                                                                                                                                                TACCGTTCACAATCGCAATCGCCAGAGCAGGCGAAGCTTTTAATAAACATTCACTGTAAATAGCATTAAGTAGTGTGAAATAATCACAACCGGGGT  GCATCTGTAGCGCAGGAATGAGTTTTCCTTTCATAAGATGTGGTTGTCTGACTGTGTGCGTGTTGTGACGGAAGGTGTTGTTCAGTGAAACGATAGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGT     GCAGAGATGAAAATGTCCCAGTAAATACGTAAACGGTTAAATGGATTCAAATGAGTTGTTGTTAGCAGAGAAGCTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGAAAACTAAGATCCCTCGTCCAGTACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTGTTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAATACAGAGTAACATTTACTACTATCCACAGCGCCACATAAACAAGATATATATCTATTTAACACACGAAATCGATAACTGTACCTGATTAAAACAAAAGCAAACACAGAAACACACACCCACACACGCGGGGGTGCGGTTTTTTGGCGTTCATTTCTAC]




>consensus_4116#0
AAAGCTTGATTCCTTGATTCCTGAGGCTCACCACCAAAACCGATTGTTGTTGTGCGGTAT
TGGTAGACCACAAACAAGTTCTCTAATTTTAATAGCTTCCCGATGATTGAGTGGTTAAGT
TTTTTTCTTTTCAATACTCACACCAGCATCTTCGAAGCGCTCAATTTTGCTCCCTTTGAC
ATCATTTTTGGCTCCCATCTTACACAGGCATGGCCAAATGTATGGCAAACATCTCTTCTC
GCTCTTGACGCCAGTGTGTCAATCTTCTTGCACTGCAATATATAAACCAGAGTGTGTAGG
GTTTTTTTGTTGTAAAATCAAAATAACTTACTGCGTTGGCTGTAAAAGCACAGCGTCGAA
ATTACGCTTTCATCTATATATAAATAATAACAATTTTAAGTACCGTTCACAATCGCAATC
GCCAGAGCAGGCGAAGCTTTTAATAAACATTCACTGTAAATAGCATTGAGTAGTGTGAAA
TAATCACAACCGGGGTGAGCATCTGTAGCGCAGGAATGAGTTTTCCTTTCATAAGATGTG
GTTGTCTGACTGTGTGCGTGTTGTGACGGAAGGTGTTGTTCAGTGAAACGATAGCAGAGT
TAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAAT
GTCCCAGTAAATACGTAAACGGNTAAATGGATTCAAATGAGTTGTTGTTAGCAGAGAAGC
TGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGAAAACTAAGATCCCTCGTCCAGTA
CGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTGT
TATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAATA
CAGAGTAACATTTACTACTATCCACAGCGCCACATAAACAAGATATATATCTATTTAACA
CACGAAATCGATAACTGTACCTGATTAAAACAAAAGCAAACACAGAAACACACACCCACA
CACGCGGGGGTGCGGTTTTTTGGCGTTCATTTCTAC

consensusID : consensus_4116#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [TCGCCCGAGGTTTCCGCAACATGCCTGTTTTGACGGAAGGTGTTGTTCAGTTGAAACGATAGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAATGTCCCAGTAAATACGTAAACGGTTAAATGGATTCAAAAGAGTTGTTGTTAGAAGAGAAGCTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGGAAACTAAGATCCCTCGTCCAGTACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTGTTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAATACAGAGTAACATTTACTACTATCCACAGCGCCACATAAAAAAAAAAAAAANAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGCATTGTTAGAGCCGAAAGCTTATCCCTTANATGAGAGGTTTAATTATAACGCTTGGAGAACTGGGCCGTCAGTTTAANAACGTCAGAGGACTGGAGNGAAAACCCTTGACGTAAACCCAACTNANATCGCGCCT]

[+] EMBL AL930817             [TCGCCCGAGGTTTCCGCAACATGCCTGTTTTGACGGAAGGTGTTGTTCAGTTGAAACGATAGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAATGTCCCAGTAAATACGTAAACGGTTAAATGGATTCAAAAGAGTTGTTGTTAGAAGAGAAGCTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGGAAACTAAGATCCCTCGTCCAGTACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTGTTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAATACAGAGTAACATTTACTACTATCCACAGCGCCACATAAAAAAAAAAAAAANAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGCATTGTTAGAGCCGAAAGCTTATCCCTTANATGAGAGGTTTAATTATAACGCTTGGAGAACTGGGCCGTCAGTTTAANAACGTCAGAGGACTGGAGNGAAAACCCTTGACGTAAACCCAACTNANATCGCGCCT]




>consensus_4116#1
TCGCCCGAGGTTTCCGCAACATGCCTGTTTTGACGGAAGGTGTTGTTCAGTTGAAACGAT
AGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAG
ATGAAAATGTCCCAGTAAATACGTAAACGGTTAAATGGATTCAAAAGAGTTGTTGTTAGA
AGAGAAGCTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGGAAACTAAGATCCCTC
GTCCAGTACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGA
CCCTTTGTTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAA
TATAAATACAGAGTAACATTTACTACTATCCACAGCGCCACATAAAAAAAAAAAAAANAA
AAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGCATTGTTAGAGCCGAAAGCTT
ATCCCTTANATGAGAGGTTTAATTATAACGCTTGGAGAACTGGGCCGTCAGTTTAANAAC
GTCAGAGGACTGGAGNGAAAACCCTTGACGTAAACCCAACTNANATCGCGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4116#0      AAAGCTTGATTCCTTGATTCCTGAGGCTCACCACCAAAACCGATTGTTGTTGTGCGGTAT 60
consensus_4116#1      ------------------------------------------------------------
                                                                                  

consensus_4116#0      TGGTAGACCACAAACAAGTTCTCTAATTTTAATAGCTTCCCGATGATTGAGTGGTTAAGT 120
consensus_4116#1      ------------------------------------------------------------
                                                                                  

consensus_4116#0      TTTTTTCTTTTCAATACTCACACCAGCATCTTCGAAGCGCTCAATTTTGCTCCCTTTGAC 180
consensus_4116#1      ------------------------------------------------------------
                                                                                  

consensus_4116#0      ATCATTTTTGGCTCCCATCTTACACAGGCATGGCCAAATGTATGGCAAACATCTCTTCTC 240
consensus_4116#1      ------------------------------------------------------------
                                                                                  

consensus_4116#0      GCTCTTGACGCCAGTGTGTCAATCTTCTTGCACTGCAATATATAAACCAGAGTGTGTAGG 300
consensus_4116#1      ------------------------------------------------------------
                                                                                  

consensus_4116#0      GTTTTTTTGTTGTAAAATCAAAATAACTTACTGCGTTGGCTGTAAAAGCACAGCGTCGAA 360
consensus_4116#1      ------------------------------------------------------------
                                                                                  

consensus_4116#0      ATTACGCTTTCATCTATATATAAATAATAACAATTTTAAGTACCGTTCACAATCGCAATC 420
consensus_4116#1      ------------------------------------------------------------
                                                                                  

consensus_4116#0      GCCAGAGCAGGCGAAGCTTTTAATAAACATTCACTGTAAATAGCATTGAGTAGTGTGAAA 480
consensus_4116#1      ------------------------------------------------------------
                                                                                  

consensus_4116#0      TAATCACAACCGGGGTGAGCATCTGTAGCGCAGGAATGAGTTTTCCTTTCATAAGATGTG 540
consensus_4116#1      ---------------------------------------------------TCGCCCGAG 9
                                                                         *     * *

consensus_4116#0      GTTGTCTGACTGTGTGCGTGTTGTGACGGAAGGTGTTGTTCAGT-GAAACGATAGCAGAG 599
consensus_4116#1      GTTTCC--GCAACATGCCTGTTTTGACGGAAGGTGTTGTTCAGTTGAAACGATAGCAGAG 67
                      ***  *   *    *** **** ********************* ***************

consensus_4116#0      TTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAA 659
consensus_4116#1      TTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAA 127
                      ************************************************************

consensus_4116#0      TGTCCCAGTAAATACGTAAACGGNTAAATGGATTCAAATGAGTTGTTGTTAGCAGAGAAG 719
consensus_4116#1      TGTCCCAGTAAATACGTAAACGGTTAAATGGATTCAAAAGAGTTGTTGTTAGAAGAGAAG 187
                      *********************** ************** ************* *******

consensus_4116#0      CTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGAAAACTAAGATCCCTCGTCCAGT 779
consensus_4116#1      CTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGGAAACTAAGATCCCTCGTCCAGT 247
                      ************************************* **********************

consensus_4116#0      ACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTG 839
consensus_4116#1      ACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTG 307
                      ************************************************************

consensus_4116#0      TTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAAT 899
consensus_4116#1      TTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAAT 367
                      ************************************************************

consensus_4116#0      ACAGAGTAACATTTACTACTATCCACAGCGCCACATAAACAAGATATATATCTATTTAAC 959
consensus_4116#1      ACAGAGTAACATTTACTACTATCCACAGCGCCACATAAAAAAAAAAAAAANAAAAANAAA 427
                      *************************************** ** * * * *   *   ** 

consensus_4116#0      ACACGAAATCGATAACTGTACCTGATTAAAACAAAAGCAAACACAGAAACACACACCCAC 1019
consensus_4116#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGCATTGTTAGAGCCGAAAGCTTATCCCTT 487
                      * *  ***   * **    *    *  * *   *  *  *   * ****      ***  

consensus_4116#0      ACACGCGGGGGTGCGGTTTTTTGGCGTTCATTTCTAC----------------------- 1056
consensus_4116#1      ANATG-AGAGGTTTAATTATAACGCTTGGAGAACTGGGCCGTCAGTTTAANAACGTCAGA 546
                      * * *  * ***    ** *   ** *  *   **                         

consensus_4116#0      -----------------------------------------------
consensus_4116#1      GGACTGGAGNGAAAACCCTTGACGTAAACCCAACTNANATCGCGCCT 593