cluster # 4119

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Anopheles gambiae
cluster # 4119 cluster # 4119 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4119#0 length = 955 sequences # 2

consensus_4119#1 length = 416 sequences # 1

consensusID : consensus_4119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 955
fasta sequence

                              [CCGCGGACGCGTGGGAAACATACCCCGGTCTGAACGTCTTCGGGAGACGCTCGTTGATACGCATCTGTTCCTGCAAGAATGCCAAAAGAAGCTCGGTCATAAACTGCCGTTGGCCGCTTATCTGCTAAAGCCGGTACAAAGAATTACAAAGTATCAACTTTTGCTTAAAGATTTGCTAAAGTTCAGCGATACTGGTACATGCTCGCGAGAGTTGCAGAAAGCATTGGATTGTATGTTGGTTGTATTAAAGTGTGTCAATGATTCAATGCACCAAATTGCAATAACGGGATTCCCGGCTGACCTATCCCAGCAAGGCGAACTACTGATGCAAGATTCGTTCCAAGTTTGGACGGAAAGTAAAAAGGACTTGCGGCTACGGCTGAAAACACAAAATAGGCACATTTTCTTGTATCAAAAAGCAATGCTATTTTGTAAACAAGGGTCGAAAACGGGGCACAACAAGAGTACTTATCAATTTAAACACTGGCTACAGATGTCACAAATCGGTTTAACGGAATCCGTTCGCGGCGACTCTAGACGATTCGAGGTCTGGCTGCAAGGACGCCAAGAAGTGCATACTATACAAGCTACCACTATCGAAATAAAAAACAAATGGGTCGCTGAAATCAAGCGTGTTTTGCTGAACCAACTGGAAGAGCTAAAGGGTGAAAAAATCAAGCAATACGGCTTGAACCACAAACCTTTGCGGCACATGACTTCATGGGACGTTCCACAAGCTGTGCAAGGAACACCGAACCGAATATTAAGCAGCGACCAACAGCCGACGTTGCAGGCTAACGGTATAGGCATAGGTGGAATGGTCGGCCTGGCACAGGACGTGGTCACACGGATAGCTCATATGAACGATGATAGTCTTCTAAACGCTACCGGAAATCTCATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTC]

[+] EMBL BM617728             [CCGCGGACGCGTGGGAAACATACCCCGGTCTGAACGTCTTCGGGAGACGCTCGTTGATACGCATCTGTTCCTGCAAGAATGCCAAAAGAAGCTCGGTCATAAACTGCCGTTGGCCGCTTATCTGCTAAAGCCGGTACAAAGAATTACAAAGTATCAACTTTTGCTTAAAGATTTGCTAAAGTTCAGCGATACTGGTACATGCTCGCGAGAGTTGCAGAAAGCATTGGATTGTATGTTGGTTGTATTAAAGTGTGTCAATGATTCAATGCACCAAATTGCAATAACGGGATTCCCGGCTGACCTATCCCAGCAAGGCGAACTACTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX624139             [                                                                                                                                                                                                         CTCGCGAGAGTTGCAGAAAGCATTGGATTGTATGTTGGTTGTATTAAAGTGTGTCAATGATTCAATGCACCAAATTGCAATAACGGGATTCCCGGCTGACCTATCCCAGCAAGGCGAACTACTGATGCAAGATTCGTTCCAAGTTTGGACGGAAAGTAAAAAGGACTTGCGGCTACGGCTGAAAACACAAAATAGGCACATTTTCTTGTATCAAAAAGCAATGCTATTTTGTAAACAAGGGTCGAAAACGGGGCACAACAAGAGTACTTATCAATTTAAACACTGGCTACAGATGTCACAAATCGGTTTAACGGAATCCGTTCGCGGCGACTCTAGACGATTCGAGGTCTGGCTGCAAGGACGCCAAGAAGTGCATACTATACAAGCTACCACTATCGAAATAAAAAACAAATGGGTCGCTGAAATCAAGCGTGTTTTGCTGAACCAACTGGAAGAGCTAAAGGGTGAAAAAATCAAGCAATACGGCTTGAACCACAAACCTTTGCGGCACATGACTTCATGGGACGTTCCACAAGCTGTGCAAGGAACACCGAACCGAATATTAAGCAGCGACCAACAGCCGACGTTGCAGGCTAACGGTATAGGCATAGGTGGAATGGTCGGCCTGGCACAGGACGTGGTCACACGGATAGCTCATATGAACGATGATAGTCTTCTAAACGCTACCGGAAATCTCATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTC]




>consensus_4119#0
CCGCGGACGCGTGGGAAACATACCCCGGTCTGAACGTCTTCGGGAGACGCTCGTTGATAC
GCATCTGTTCCTGCAAGAATGCCAAAAGAAGCTCGGTCATAAACTGCCGTTGGCCGCTTA
TCTGCTAAAGCCGGTACAAAGAATTACAAAGTATCAACTTTTGCTTAAAGATTTGCTAAA
GTTCAGCGATACTGGTACATGCTCGCGAGAGTTGCAGAAAGCATTGGATTGTATGTTGGT
TGTATTAAAGTGTGTCAATGATTCAATGCACCAAATTGCAATAACGGGATTCCCGGCTGA
CCTATCCCAGCAAGGCGAACTACTGATGCAAGATTCGTTCCAAGTTTGGACGGAAAGTAA
AAAGGACTTGCGGCTACGGCTGAAAACACAAAATAGGCACATTTTCTTGTATCAAAAAGC
AATGCTATTTTGTAAACAAGGGTCGAAAACGGGGCACAACAAGAGTACTTATCAATTTAA
ACACTGGCTACAGATGTCACAAATCGGTTTAACGGAATCCGTTCGCGGCGACTCTAGACG
ATTCGAGGTCTGGCTGCAAGGACGCCAAGAAGTGCATACTATACAAGCTACCACTATCGA
AATAAAAAACAAATGGGTCGCTGAAATCAAGCGTGTTTTGCTGAACCAACTGGAAGAGCT
AAAGGGTGAAAAAATCAAGCAATACGGCTTGAACCACAAACCTTTGCGGCACATGACTTC
ATGGGACGTTCCACAAGCTGTGCAAGGAACACCGAACCGAATATTAAGCAGCGACCAACA
GCCGACGTTGCAGGCTAACGGTATAGGCATAGGTGGAATGGTCGGCCTGGCACAGGACGT
GGTCACACGGATAGCTCATATGAACGATGATAGTCTTCTAAACGCTACCGGAAATCTCAT
GCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTC

consensusID : consensus_4119#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence

                              [CCCCGAGGTTATGGCACAGGACGTGGTCACACGGATAGCTCATATGAATGATGATAGTCTTCTAAACGCTACCGGAATCTCATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTCGAATAGCGAAGATGAGTTTACTACTGTAGAGGATAGTGTCGTGCCGGGGCACAAGTTTGTGTCATTGGCTGATTACTGTGCAATGGGAAATTCAGAAGTTTCTATGAAAGAGGCTGAAGTAGTGGAGCTGCTGAAAGTCGGCTGTGCAGGATGGTGGTTTGTGAAAGTGATCGCTACCGGCCTTGAAGGATGGGCTCCAGCAGCATACTTAGAGCCAGTGGCACGCAAAAATTCTCGCCTTAGAAGCGCGCGCAGCCAAGACCGACTGAACGACCACT]

[+] EMBL AL933686             [CCCCGAGGTTATGGCACAGGACGTGGTCACACGGATAGCTCATATGAATGATGATAGTCTTCTAAACGCTACCGGAATCTCATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTCGAATAGCGAAGATGAGTTTACTACTGTAGAGGATAGTGTCGTGCCGGGGCACAAGTTTGTGTCATTGGCTGATTACTGTGCAATGGGAAATTCAGAAGTTTCTATGAAAGAGGCTGAAGTAGTGGAGCTGCTGAAAGTCGGCTGTGCAGGATGGTGGTTTGTGAAAGTGATCGCTACCGGCCTTGAAGGATGGGCTCCAGCAGCATACTTAGAGCCAGTGGCACGCAAAAATTCTCGCCTTAGAAGCGCGCGCAGCCAAGACCGACTGAACGACCACT]




>consensus_4119#1
CCCCGAGGTTATGGCACAGGACGTGGTCACACGGATAGCTCATATGAATGATGATAGTCT
TCTAAACGCTACCGGAATCTCATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGC
ATGGAGCTCCGACTACTCGAATAGCGAAGATGAGTTTACTACTGTAGAGGATAGTGTCGT
GCCGGGGCACAAGTTTGTGTCATTGGCTGATTACTGTGCAATGGGAAATTCAGAAGTTTC
TATGAAAGAGGCTGAAGTAGTGGAGCTGCTGAAAGTCGGCTGTGCAGGATGGTGGTTTGT
GAAAGTGATCGCTACCGGCCTTGAAGGATGGGCTCCAGCAGCATACTTAGAGCCAGTGGC
ACGCAAAAATTCTCGCCTTAGAAGCGCGCGCAGCCAAGACCGACTGAACGACCACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4119#0      CCGCGGACGCGTGGGAAACATACCCCGGTCTGAACGTCTTCGGGAGACGCTCGTTGATAC 60
consensus_4119#1      ------------------------------------------------------------
                                                                                  

consensus_4119#0      GCATCTGTTCCTGCAAGAATGCCAAAAGAAGCTCGGTCATAAACTGCCGTTGGCCGCTTA 120
consensus_4119#1      ------------------------------------------------------------
                                                                                  

consensus_4119#0      TCTGCTAAAGCCGGTACAAAGAATTACAAAGTATCAACTTTTGCTTAAAGATTTGCTAAA 180
consensus_4119#1      ------------------------------------------------------------
                                                                                  

consensus_4119#0      GTTCAGCGATACTGGTACATGCTCGCGAGAGTTGCAGAAAGCATTGGATTGTATGTTGGT 240
consensus_4119#1      --------------------CCCCGAGGTTATGGCACAGGACGTGGTCACACGGATAGCT 40
                                           * ** *    * *** *   * * *         * * *

consensus_4119#0      TGTATTAAAGTGTGTCAATGATTCAATGCACCAAATTGCAATAACGGGATTCCCGGCTGA 300
consensus_4119#1      CATATGAA----TGATGATAGTCTTCTAAACGCTACCGGAATCTCATGCTCCTCGTCCGA 96
                        *** **    **   **  *    *  **   *  * ***  *  * * * ** * **

consensus_4119#0      CCTATCCCAGCAAGGCGAACTACTGATGCAAGATTCGTTCCAAGTTTGGACGGAAAGTAA 360
consensus_4119#1      AC-ACGATAACCAGGAAAGCAATGCATGGA------GCTCCGA--CTACTCGAATAGCGA 147
                       * *    * * ***  * * *   *** *      * *** *   *   ** * **  *

consensus_4119#0      AAAGGA-CTTGCGGCTACGGCTGAAAACACAAAATAGGCACATTTTCTTGTATCAAAAAG 419
consensus_4119#1      AGATGAGTTTACTACTGTAGAGGATAGTGTCGTGCCGGGGCACAAGTTTGTGTCATTGGC 207
                      * * **  ** *  **   *  ** *          **  **     **** ***     

consensus_4119#0      CAATGCTATTTTGTAAACAAGGGTCGAAAACGGGGCACAACAAGAGTACTTATCAATTTA 479
consensus_4119#1      TGAT--TACTGTGCAATGGGAAATTCAGAA---GTTTCTATGAAAGAG-------GCTGA 255
                        **  ** * ** **       *  * **   *   * *  * **           * *

consensus_4119#0      AACACTGGCTACAGATGTCACAAATCGGTTTAACGGAATCCGTTCGCGGCGACTCTAGAC 539
consensus_4119#1      AGTAGTGG----AGCTGCTGAAAGTCGGCTGTGCAGGATG-GTGGTTTGTGAAAGTGATC 310
                      *  * ***    ** **    ** **** *   * * **  **     * **   *   *

consensus_4119#0      GATTCGAGGTCTGGCTGCAAGGACGCCAAGAAGTGCATACTATACAAGCTACCACTATCG 599
consensus_4119#1      GCTACC-GGCCTTGAAGGATGGGCTCCAGCA---GCATACT--------TAGAGCCAGTG 358
                      * * *  ** ** *  * * ** * ***  *   *******        **   * *  *

consensus_4119#0      AAATAAAAAACAAATGGGTCGCTGAAATCAAGCGTGTTTTGCTGA-ACCAACTGGAAGAG 658
consensus_4119#1      GCACGCAAA---AATTC-TCGCCTTAG--AAGCGCGCGCAGCCAAGACCGACTGAACGAC 412
                        *   ***   ***   ****   *   ***** *    **  * *** **** * ** 

consensus_4119#0      CTAAAGGGTGAAAAAATCAAGCAATACGGCTTGAACCACAAACCTTTGCGGCACATGACT 718
consensus_4119#1      CACT-------------------------------------------------------- 416
                      *                                                           

consensus_4119#0      TCATGGGACGTTCCACAAGCTGTGCAAGGAACACCGAACCGAATATTAAGCAGCGACCAA 778
consensus_4119#1      ------------------------------------------------------------
                                                                                  

consensus_4119#0      CAGCCGACGTTGCAGGCTAACGGTATAGGCATAGGTGGAATGGTCGGCCTGGCACAGGAC 838
consensus_4119#1      ------------------------------------------------------------
                                                                                  

consensus_4119#0      GTGGTCACACGGATAGCTCATATGAACGATGATAGTCTTCTAAACGCTACCGGAAATCTC 898
consensus_4119#1      ------------------------------------------------------------
                                                                                  

consensus_4119#0      ATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTC 955
consensus_4119#1      ---------------------------------------------------------