cluster # 4126

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Anopheles gambiae
cluster # 4126 cluster # 4126 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4126#0 length = 745 sequences # 2

consensus_4126#1 length = 658 sequences # 1

consensusID : consensus_4126#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 745
fasta sequence

                              [TACTGGACGGAGTAAGTGATTCGTCACAACGGCGCATACCATTTGCAGTCGCCGGCACGAAACTTAAACTTCCTCCAGTACTACTGTCTGGATCAGGTGCTATTCTTGATCGGTGTCGTTTACCTGCTGCGAGCATTGACCCGTCTGTATCTGAACCCACGAATCGTGCAGCTGGGCAAGGAGAAACTTCACTGAGAACAGGGTCCAGGGAAATAAACAGCGAAATGAGCAAAGGGAAGCTGGAAGGACCACGTAACTAACTTATTACGCAAGCAGTGTTTGAACGTGGGCAAAATGGGTAGAGCGCACCTTAGTTTTACAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTGTACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAAGTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGTTTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTTTTTGTGCAATAATTTAAACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATATGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCCTGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGTGATAAGTTGGTGTGAAGGATGAATGAA]

[+] EMBL BX604622             [TACTGGACGGAGTAAGTGATTCGTCACAACGGCGCATACCATTTGCAGTCGCCGGCACGAAACTTAAACTTCCTCCAGTACTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX621721             [                                    TACCATTTGCAGTCGCCGGCACGAAACTTAAACTTCCTCCAGTACTACTGTCTGGATCAGGTGCTATTCTTGATCGGTGTCGTTTACCTGCTGCGAGCATTGACCCGTCTGTATCTGAACCCACGAATCGTGCAGCTGGGCAAGGAGAAACTTCACTGAGAACAGGGTCCAGGGAAATAAACAGCGAAATGAGCAAAGGGAAGCTGGAAGGACCACGTAACTAACTTATTACGCAAGCAGTGTTTGAACGTGGGCAAAATGGGTAGAGCGCACCTTAGTTTTACAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTGTACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAAGTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGTTTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTTTTTGTGCAATAATTTAAACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATATGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCCTGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGTGATAAGTTGGTGTGAAGGATGAATGAA]




>consensus_4126#0
TACTGGACGGAGTAAGTGATTCGTCACAACGGCGCATACCATTTGCAGTCGCCGGCACGA
AACTTAAACTTCCTCCAGTACTACTGTCTGGATCAGGTGCTATTCTTGATCGGTGTCGTT
TACCTGCTGCGAGCATTGACCCGTCTGTATCTGAACCCACGAATCGTGCAGCTGGGCAAG
GAGAAACTTCACTGAGAACAGGGTCCAGGGAAATAAACAGCGAAATGAGCAAAGGGAAGC
TGGAAGGACCACGTAACTAACTTATTACGCAAGCAGTGTTTGAACGTGGGCAAAATGGGT
AGAGCGCACCTTAGTTTTACAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTGT
ACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAAG
TATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGTT
TCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTTTTTGTGCAATAATTTAAA
CACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATATG
TTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCCTG
TTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGTGA
TAAGTTGGTGTGAAGGATGAATGAA

consensusID : consensus_4126#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [GGCCAGAATCGGCACGATGGAGTTTTACAAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTGTACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAAGTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGTTTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTGTTTTGTGCAATAATTTAAACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATATGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCCTGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGTGATAAGTTGGTGTGAAGGATGAATGAAGTTTTACCAAGGAAAAGCTTAAAACCCATCTGCATGTTAGTATTGTAAAGGCAGGATGTTACAGATGATGTTGTAAACGTACAGCAATAGAACGTGCGTATTTATTGGTATGGGGATTATTGTAACGTCGCAACGTTAATCGTAAGTTGAGGCTAGTNNTGCGCTAAGCTCTGCGTTGGTTGGGTGGGGAAAAAAAGCAGANN]

[+] EMBL BX468396             [GGCCAGAATCGGCACGATGGAGTTTTACAAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTGTACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAAGTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGTTTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTGTTTTGTGCAATAATTTAAACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATATGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCCTGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGTGATAAGTTGGTGTGAAGGATGAATGAAGTTTTACCAAGGAAAAGCTTAAAACCCATCTGCATGTTAGTATTGTAAAGGCAGGATGTTACAGATGATGTTGTAAACGTACAGCAATAGAACGTGCGTATTTATTGGTATGGGGATTATTGTAACGTCGCAACGTTAATCGTAAGTTGAGGCTAGTNNTGCGCTAAGCTCTGCGTTGGTTGGGTGGGGAAAAAAAGCAGANN]




>consensus_4126#1
GGCCAGAATCGGCACGATGGAGTTTTACAAAAGGGTTTTTTAACAAAGAAATGACTAGAC
AACGAGTGTACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACA
ACAACAAAGTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGC
GCCTCCGTTTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTGTTTTGTGCA
ATAATTTAAACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAA
ATGTGATATGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCG
ACGAACCCTGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTG
TAAGTTGTGATAAGTTGGTGTGAAGGATGAATGAAGTTTTACCAAGGAAAAGCTTAAAAC
CCATCTGCATGTTAGTATTGTAAAGGCAGGATGTTACAGATGATGTTGTAAACGTACAGC
AATAGAACGTGCGTATTTATTGGTATGGGGATTATTGTAACGTCGCAACGTTAATCGTAA
GTTGAGGCTAGTNNTGCGCTAAGCTCTGCGTTGGTTGGGTGGGGAAAAAAAGCAGANN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4126#0      TACTGGACGGAGTAAGTGATTCGTCACAACGGCGCATACCATTTGCAGTCGCCGGCACGA 60
consensus_4126#1      ------------------------------------------------------------
                                                                                  

consensus_4126#0      AACTTAAACTTCCTCCAGTACTACTGTCTGGATCAGGTGCTATTCTTGATCGGTGTCGTT 120
consensus_4126#1      ------------------------------------------------------------
                                                                                  

consensus_4126#0      TACCTGCTGCGAGCATTGACCCGTCTGTATCTGAACCCACGAATCGTGCAGCTGGGCAAG 180
consensus_4126#1      ------------------------------------------------------------
                                                                                  

consensus_4126#0      GAGAAACTTCACTGAGAACAGGGTCCAGGGAAATAAACAGCGAAATGAGCAAAGGGAAGC 240
consensus_4126#1      ------------------------------------------------------------
                                                                                  

consensus_4126#0      TGGAAGGACCACGTAACTAACTTATTACGCAAGCAGTGTTTGAACGTGGGCAAAATGGGT 300
consensus_4126#1      -----------------------------------------------GGCCAGAATCGGC 13
                                                                     ** ** *** ** 

consensus_4126#0      AGAGCGCACCTTAGTTTTACAAA-GGGTTTTTTAACAAAGAAATGACTAGACAACGAGTG 359
consensus_4126#1      ACGATGGA-----GTTTTACAAAAGGGTTTTTTAACAAAGAAATGACTAGACAACGAGTG 68
                      *    * *     ********** ************************************

consensus_4126#0      TACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAA 419
consensus_4126#1      TACAGTAAGTTCGTTTTTATTCGGGGATGGTGCATTTAGAACCAAGTGAACAACAACAAA 128
                      ************************************************************

consensus_4126#0      GTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGT 479
consensus_4126#1      GTATTGCGTAACGTAGAGGGTAACACGATATCAGTCGAACTGTTTCTGAGGCGCCTCCGT 188
                      ************************************************************

consensus_4126#0      TTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTT-TTTTGTGCAATAATTTA 538
consensus_4126#1      TTCGGCGTAAACTTGTTATTCGGGTTTCGTTAACGTCTTTTTGTTTTGTGCAATAATTTA 248
                      ****************************************** *****************

consensus_4126#0      AACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATA 598
consensus_4126#1      AACACGGGGGCAGTTAGACGATCCAATTCCGATGCAGCTCTCGAATTAATAAATGTGATA 308
                      ************************************************************

consensus_4126#0      TGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCC 658
consensus_4126#1      TGTTTATTTTTGTTTTGCTAGAGCCGGTTCAACCGTCCGATTCGATCGCCCGACGAACCC 368
                      ************************************************************

consensus_4126#0      TGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGT 718
consensus_4126#1      TGTTAGAACTGTAACTGACAATACAAAACCAGAACCACAGTGTGAATAGTTGTAAGTTGT 428
                      ************************************************************

consensus_4126#0      GATAAGTTGGTGTGAAGGATGAATGAA--------------------------------- 745
consensus_4126#1      GATAAGTTGGTGTGAAGGATGAATGAAGTTTTACCAAGGAAAAGCTTAAAACCCATCTGC 488
                      ***************************                                 

consensus_4126#0      ------------------------------------------------------------
consensus_4126#1      ATGTTAGTATTGTAAAGGCAGGATGTTACAGATGATGTTGTAAACGTACAGCAATAGAAC 548
                                                                                  

consensus_4126#0      ------------------------------------------------------------
consensus_4126#1      GTGCGTATTTATTGGTATGGGGATTATTGTAACGTCGCAACGTTAATCGTAAGTTGAGGC 608
                                                                                  

consensus_4126#0      --------------------------------------------------
consensus_4126#1      TAGTNNTGCGCTAAGCTCTGCGTTGGTTGGGTGGGGAAAAAAAGCAGANN 658