cluster # 4128

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Anopheles gambiae
cluster # 4128 cluster # 4128 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4128#0 length = 981 sequences # 2

consensus_4128#1 length = 428 sequences # 1

consensusID : consensus_4128#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 981
fasta sequence

                              [ACGGGCTGAAATGAATGAATGTGCAGAAGAGTGAACAAGCGAGTCGAATGAGTCGAAGGACGACTTCTTAAAACGGTGAGTTTGTCACCGCATTAGCATTATACGAAAAGTAACGAAAAGCTGCACAATGCAGACATGATTGCACTTGTTTCATATTTTAGTTAAGCGTGATGCTCCTTTTTTTTAAAGCATGTATCTATACGGATACTATCATAAGCATGCGACATAATACTACCAAAAAGAGAAAATGTAAGGGGAAAACGAAATTCTGAACTAAATAAGGAAAGAAGGTGCACAACGCAACCTGCAGTTGCACTATACAGATTCAGCTGATTCTCTCAGCAACAGCTCAGAATCACCTTGGTGTAGCACTGGGGAAGAGAGAACAGAGAGAGAGAGAGAGAGAGAGTGGGAGAAAGAGAATTAGAGGGACAAAGAAAACTGCGTTAGGCAATTGTTTTTTGAATAGTAGAGATAAGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTAGGGAAGGGGGCTAGTTCAAGTTGTAGGTATGAGAAATGATAAAAAATGAGAGTAGAAATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGTGGAGGGAAAAGGCCAAATGGGAAGGTAGTTGAGAAGGTGATTTGCACGGGAGAACGCTCTTAAACACAATATTCTAACCGCAAACACTAACCAGAGGAGGAAATGTGTTCCGACCTCCTCCCCCAATCTCCCCCCCAATACAANGG]

[+] EMBL BX623726             [ACGGGCTGAAATGAATGAATGTGCAGAAGAGTGAACAAGCGAGTCGAATGAGTCGAAGGACGACTTCTTAAAACGGTGAGTTTGTCACCGCATTAGCATTATACGAAAAGTAACGAAAAGCTGCACAATGCAGACATGATTGCACTTGTTTCATATTTTAGTTAAGCGTGATGCTCCTTTTTTTTAAAGCATGTATCTATACGGATACTATCATAAGCATGCGACATAATACTACCAAAAAGAGAAAATGTAAGGGGAAAACGAAATTCTGAACTAAATAAGGAAAGAAGGTGCACAACGCAACCTGCAGTTGCACTATACAGATTCAGCTGATTCTCTCAGCAACAGCTCAGAATCACCTTGGTGTAGCACTGGGGAAGAGAGAACAGAGAGAGAGAGAGAGAGAGAGTGGGAGAAAGAGAATTAGAGGGACAAAGAAAACTGCGTTAGGCAATTGTTTTTTGAATAGTAGAGATAAGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTT                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX626363             [                                                                                                                                                                                                                                                                                                                          ACTATACAGATTCAGCTGATTCTCTCAGCAACAGCTCAGAATCACCTTGGTGTAGCACTGGGGAAGAGAGAACAGAGAGAGAGAGAGAGAGAGAGTGGGAGAAAGAGAATTAGAGGGACAAAGAAAACTGCGTTAGGCAATTGTTTTTTGAATAGTAGAGATAAGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTAGGGAAGGGGGCTAGTTCAAGTTGTAGGTATGAGAAATGATAAAAAATGAGAGTAGAAATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGTGGAGGGAAAAGGCCAAATGGGAAGGTAGTTGAGAAGGTGATTTGCACGGGAGAACGCTCTTAAACACAATATTCTAACCGCAAACACTAACCAGAGGAGGAAATGTGTTCCGACCTCCTCCCCCAATCTCCCCCCCAATACAANGG]




>consensus_4128#0
ACGGGCTGAAATGAATGAATGTGCAGAAGAGTGAACAAGCGAGTCGAATGAGTCGAAGGA
CGACTTCTTAAAACGGTGAGTTTGTCACCGCATTAGCATTATACGAAAAGTAACGAAAAG
CTGCACAATGCAGACATGATTGCACTTGTTTCATATTTTAGTTAAGCGTGATGCTCCTTT
TTTTTAAAGCATGTATCTATACGGATACTATCATAAGCATGCGACATAATACTACCAAAA
AGAGAAAATGTAAGGGGAAAACGAAATTCTGAACTAAATAAGGAAAGAAGGTGCACAACG
CAACCTGCAGTTGCACTATACAGATTCAGCTGATTCTCTCAGCAACAGCTCAGAATCACC
TTGGTGTAGCACTGGGGAAGAGAGAACAGAGAGAGAGAGAGAGAGAGAGTGGGAGAAAGA
GAATTAGAGGGACAAAGAAAACTGCGTTAGGCAATTGTTTTTTGAATAGTAGAGATAAGA
AGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATA
TATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAG
ATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCA
AACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTAG
GGAAGGGGGCTAGTTCAAGTTGTAGGTATGAGAAATGATAAAAAATGAGAGTAGAAATAT
CAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGTGGAGG
GAAAAGGCCAAATGGGAAGGTAGTTGAGAAGGTGATTTGCACGGGAGAACGCTCTTAAAC
ACAATATTCTAACCGCAAACACTAACCAGAGGAGGAAATGTGTTCCGACCTCCTCCCCCA
ATCTCCCCCCCAATACAANGG

consensusID : consensus_4128#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [CAGATCCCCCACGAGNTAAAAAACTGCGTTAGGCAATTGTTCTTTTGAATAGTAGAGATAAGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTAGGGGAAGGGGGCTAGTTGCAAGTTGTAGGTATGAGAAATGATAAGAGAAATGAGAGTAGAAATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGTGGAGGG]

[+] EMBL BX466561             [CAGATCCCCCACGAGNTAAAAAACTGCGTTAGGCAATTGTTCTTTTGAATAGTAGAGATAAGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTAGGGGAAGGGGGCTAGTTGCAAGTTGTAGGTATGAGAAATGATAAGAGAAATGAGAGTAGAAATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGTGGAGGG]




>consensus_4128#1
CAGATCCCCCACGAGNTAAAAAACTGCGTTAGGCAATTGTTCTTTTGAATAGTAGAGATA
AGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATT
ATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAG
GAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTAC
TCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAG
TAGGGGAAGGGGGCTAGTTGCAAGTTGTAGGTATGAGAAATGATAAGAGAAATGAGAGTA
GAAATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGT
GTGGAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4128#0      ACGGGCTGAAATGAATGAATGTGCAGAAGAGTGAACAAGCGAGTCGAATGAGTCGAAGGA 60
consensus_4128#1      ------------------------------------------------------------
                                                                                  

consensus_4128#0      CGACTTCTTAAAACGGTGAGTTTGTCACCGCATTAGCATTATACGAAAAGTAACGAAAAG 120
consensus_4128#1      ------------------------------------------------------------
                                                                                  

consensus_4128#0      CTGCACAATGCAGACATGATTGCACTTGTTTCATATTTTAGTTAAGCGTGATGCTCCTTT 180
consensus_4128#1      ------------------------------------------------------------
                                                                                  

consensus_4128#0      TTTTTAAAGCATGTATCTATACGGATACTATCATAAGCATGCGACATAATACTACCAAAA 240
consensus_4128#1      ------------------------------------------------------------
                                                                                  

consensus_4128#0      AGAGAAAATGTAAGGGGAAAACGAAATTCTGAACTAAATAAGGAAAGAAGGTGCACAACG 300
consensus_4128#1      ------------------------------------------------------------
                                                                                  

consensus_4128#0      CAACCTGCAGTTGCACTATACAGATTCAGCTGATTCTCTCAGCAACAGCTCAGAATCACC 360
consensus_4128#1      ------------------------------------------------------------
                                                                                  

consensus_4128#0      TTGGTGTAGCACTGGGGAAGAGAGAACAGAGAGAGAGAGAGAGAGAGAGTGGGAGAAAGA 420
consensus_4128#1      ----------------------------------------------------------CA 2
                                                                                 *

consensus_4128#0      GAATTAGAGGGACAAAGAAAACTGCGTTAGGCAATTGTT-TTTTGAATAGTAGAGATAAG 479
consensus_4128#1      GATCCCCCACGAGNTAAAAAACTGCGTTAGGCAATTGTTCTTTTGAATAGTAGAGATAAG 62
                      **        **   * ********************** ********************

consensus_4128#0      AAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTAT 539
consensus_4128#1      AAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTAT 122
                      ************************************************************

consensus_4128#0      ATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGA 599
consensus_4128#1      ATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGA 182
                      ************************************************************

consensus_4128#0      GATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTC 659
consensus_4128#1      GATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTC 242
                      ************************************************************

consensus_4128#0      AAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTA 719
consensus_4128#1      AAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTA 302
                      ************************************************************

consensus_4128#0      GGG-AAGGGGGCTAGTT-CAAGTTGTAGGTATGAGAAATGATAAAA--AATGAGAGTAGA 775
consensus_4128#1      GGGGAAGGGGGCTAGTTGCAAGTTGTAGGTATGAGAAATGATAAGAGAAATGAGAGTAGA 362
                      *** ************* ************************** *  ************

consensus_4128#0      AATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGT 835
consensus_4128#1      AATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGT 422
                      ************************************************************

consensus_4128#0      GGAGGGAAAAGGCCAAATGGGAAGGTAGTTGAGAAGGTGATTTGCACGGGAGAACGCTCT 895
consensus_4128#1      GGAGGG------------------------------------------------------ 428
                      ******                                                      

consensus_4128#0      TAAACACAATATTCTAACCGCAAACACTAACCAGAGGAGGAAATGTGTTCCGACCTCCTC 955
consensus_4128#1      ------------------------------------------------------------
                                                                                  

consensus_4128#0      CCCCAATCTCCCCCCCAATACAANGG 981
consensus_4128#1      --------------------------