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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 711 fasta sequence
[GCAGCACGNATAGCGACGCGTNAACTCTAATATATTTTAAGTGAGAGTGGATCAGAGAGAGAGAAAGAGAGAGAAGCAAACGTATCAGCAGCGCGCGCAGTTGTTGGCAAACATCATATGACGCCCCCTTCACCCCTGGTCGGGTCGGGGGTGAAGCCACTGTCCTCTTCTCACCCTGGCCTAGAAGAAGAAGCGTGGAAATAGTTTAAGAGTGGTGTTTAATAATCGTTTGGCAAGTTCATCGAGTGACGTATGCCAAAGCCATCGCGGAAGATTCTCCCCCCGTTGTGCAGACGACATCCATCGAACGATATTAACCGGTTTAGCATCTTCACCCGGTGGTTGAGACCGTTTGGGTTGGAATATGGGGCGGGAAAGGTGAAGATGAAGC-AGACATTGGTTTAAGTGCTTAGCTAGAAGAAAGAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGGTAATCACAGGTAGAGACNAGATCGAACAAAATTAGTTACCCCCGACGAGGATGAGGGTTTTTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGAAAGTGAGGGAAGTAAGTTTAAAGCTCTGGGAACTAATTATGAATGGAACTTGTTTTAAACCTCTCTCTCCTTTTTCTTTCGTTTTCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAG]
[+] EMBL BX624215 [GCAGCACGNATAGCGACGCGTNAACTCTAATATATTTTAAGTGAGAGTGGATCAGAGAGAGAGAAAGAGAGAGAAGCAAACGTATCAGCAGCGCGCGCAGTTGTTGGCAAACATCATATGACGCCCCCTTCACCCCTGGTCGGGTCGGGGGTGAAGCCACTGTCCTCTTCTCACCCTGGCCTAGAAGAAGAAGCGTGGAAATAGTTTAAGAGTGGTGTTTAATAATCGTTTGGCAAGTTCATCGAGTGACGTATGCCAAAGCCATCGCGGAAGATTCTCCCCCCGTTGTGCAGACGACATCCATCGAACGATATTAACCGGTTTAGCATCTTCACCCGGTGGTTGAGACCGTTTGGGTTGGAATATGGGGCGGGAAAGGTGAAGATGAAGC AGACATTGGTTTAAGTGCTTAGCTAGAAGAAAGAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGGTAATCACAGGTAGAGACNAGATCGAACAAA ]
[+] EMBL BX604581 [ GTGGTGTTTAATAATCGTTTGGCAAGTTCATCGAGTGACGTATGCCAAAGCCATCGCGGAAGATTCTCCCCCCGTTGTGCAGACGACATCCATCGAACGATATTAACCGGTTTAGCATCTTCACCCGGTGGTTGAGACCGTTTGGGTTGGAATATGGGGCGGGAAAGGTGAAGATGAAGCGAGACATTGGTTTAAGTGCTTAGCTAGAAGAAAGAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGGTAATCACAGGTAGAGACAAGATCGAACAAAATTAGTTACCCCCGACGAGGATGAGGGTTTTTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGAAAGTGAGGGAAGTAAGTTTAAAGCTCTGGGAACTAATTATGAATGGAACTTGTTTTAAACCTCTCTCTCCTTTTTCTTTCGTTTTCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAG]
consensusID : consensus_4129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence
[TCGCCCGAGGTGACATTGGTTTAAGTGCTTAGCTAGAAGAAAGAAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGGTAATCACAGGTAGAGACAAGATCGAACAAAATTAGTTACCCCGACGAGGATGAGGGTTTTTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGGAAGTGAGGGAAGTAAGTTTAAAGCTCTGGGAACTAACTTATGAATGTAACTTGGTTTTAAACCTCTCTCTCCTTTTTCTTTCGTTTCCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAGTTTTCAATACAGATTCTTGAATTCAAAACACTCTTCAGAAGACAGTACTTAGTGCACGCTAGGGGCGTGCGGTNTGAACTGTGTGTTTGTAGATNAATAGTTGGCAGTGTGCGATTTTCCTTCGTTGTTGTTACTAATGGCGAACGNAATATGTTCCATTCACTTGTCCGTCCCGTGCAAACCCAACG]
[+] EMBL AL931602 [TCGCCCGAGGTGACATTGGTTTAAGTGCTTAGCTAGAAGAAAGAAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGGTAATCACAGGTAGAGACAAGATCGAACAAAATTAGTTACCCCGACGAGGATGAGGGTTTTTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGGAAGTGAGGGAAGTAAGTTTAAAGCTCTGGGAACTAACTTATGAATGTAACTTGGTTTTAAACCTCTCTCTCCTTTTTCTTTCGTTTCCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAGTTTTCAATACAGATTCTTGAATTCAAAACACTCTTCAGAAGACAGTACTTAGTGCACGCTAGGGGCGTGCGGTNTGAACTGTGTGTTTGTAGATNAATAGTTGGCAGTGTGCGATTTTCCTTCGTTGTTGTTACTAATGGCGAACGNAATATGTTCCATTCACTTGTCCGTCCCGTGCAAACCCAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4129#0 GCAGCACGNATAGCGACGCGTNAACTCTAATATATTTTAAGTGAGAGTGGATCAGAGAGA 60
consensus_4129#1 ------------------------------------------------------------
consensus_4129#0 GAGAAAGAGAGAGAAGCAAACGTATCAGCAGCGCGCGCAGTTGTTGGCAAACATCATATG 120
consensus_4129#1 ------------------------------------------------------------
consensus_4129#0 ACGCCCCCTTCACCCCTGGTCGGGTCGGGGGTGAAGCCACTGTCCTCTTCTCACCCTGGC 180
consensus_4129#1 ------------------------------------------------------------
consensus_4129#0 CTAGAAGAAGAAGCGTGGAAATAGTTTAAGAGTGGTGTTTAATAATCGTTTGGCAAGTTC 240
consensus_4129#1 ------------------------------------------------------------
consensus_4129#0 ATCGAGTGACGTATGCCAAAGCCATCGCGGAAGATTCTCCCCCCGTTGTGCAGACGACAT 300
consensus_4129#1 ------------------------------------------------------------
consensus_4129#0 CCATCGAACGATATTAACCGGTTTAGCATCTTCACCCGGTGGTTGAGACCGTTTGGGTTG 360
consensus_4129#1 ------------------------------------------------------------
consensus_4129#0 GAATATGGGGCGGGAAAGGTGAAGATGAAGCAGACATTGGTTTAAGTGCTTAGCTAGAAG 420
consensus_4129#1 ---------------------TCGCCCGAGGTGACATTGGTTTAAGTGCTTAGCTAGAAG 39
* ** ****************************
consensus_4129#0 AAAGAAAAAAA-GTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGG 479
consensus_4129#1 AAAGAAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGG 99
*********** ************************************************
consensus_4129#0 TAATCACAGGTAGAGACNAGATCGAACAAAATTAGTTACCCCCGACGAGGATGAGGGTTT 539
consensus_4129#1 TAATCACAGGTAGAGACAAGATCGAACAAAATTAGTTACCCC-GACGAGGATGAGGGTTT 158
***************** ************************ *****************
consensus_4129#0 TTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGAAAGTGAGGGAAGTAAGTTTA 599
consensus_4129#1 TTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGGAAGTGAGGGAAGTAAGTTTA 218
*************************************** ********************
consensus_4129#0 AAGCTCTGGGAACTAA-TTATGAATGGAACTTG-TTTTAAACCTCTCTCTCCTTTTTCTT 657
consensus_4129#1 AAGCTCTGGGAACTAACTTATGAATGTAACTTGGTTTTAAACCTCTCTCTCCTTTTTCTT 278
**************** ********* ****** **************************
consensus_4129#0 TCGTTTTCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAG------ 711
consensus_4129#1 TCGTTTCCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAGTTTTCA 338
****** ***********************************************
consensus_4129#0 ------------------------------------------------------------
consensus_4129#1 ATACAGATTCTTGAATTCAAAACACTCTTCAGAAGACAGTACTTAGTGCACGCTAGGGGC 398
consensus_4129#0 ------------------------------------------------------------
consensus_4129#1 GTGCGGTNTGAACTGTGTGTTTGTAGATNAATAGTTGGCAGTGTGCGATTTTCCTTCGTT 458
consensus_4129#0 ------------------------------------------------------------
consensus_4129#1 GTTGTTACTAATGGCGAACGNAATATGTTCCATTCACTTGTCCGTCCCGTGCAAACCCAA 518
consensus_4129#0 --
consensus_4129#1 CG 520
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||