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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence
[CCACGCGTCCGATCGATGGCGGTACGGTTTCGTCGCATTTACGCCCTGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCGGTGCTTGAAAGCTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGTCGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCACAGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAGCGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTGGACCATCGGGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCATCTACCATCGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTATTCTGCGCACCTTCGGTGCCTCGGCAGGCTCACGGCAAAATTCCTTTGGCAGCTAAGGGCGTAGCACTGCAAGGTCGATGCAAGGTGCAGTCCCTCTAAGCTACTGAAAACAATTCTTCTGTTGTGGGT]
[+] EMBL BM636395 [CCACGCGTCCGATCGATGGCGGTACGGTTTCGTCGCATTTACGCCCTGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCGGTGCTTGAAAGCTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGTCGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCACAGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAGCGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTGGACCATCGGGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCATCTACCATCGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTATTCTGCGCACCTTCGGTGCCTCGGCAGGCTCACGGCAAAATTCCTTTGGCAGCTAAGGGCGTAGCACTGCAAGGTCGATGCAAGGTGCAGTCCCTCTAAGCTACTGAAAACAATTCTTCTGTTGTGGGT]
consensusID : consensus_4161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[CCGCGCTGGTGTACCATCGTCTTCGATGTCGCTGAAACATGTTCCAATAAAAGCAATAGTATTTTCGGACGAATCTTTGCCAAGTATCGATGGCGGTACGGTTTCGTCGCATTTACGCCCTGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCGGTGCTTGAAAGCTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGTCGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCACAGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAGCGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTGGACCATCGGGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCA]
[+] EMBL BM639925 [CCGCGCTGGTGTACCATCGTCTTCGATGTCGCTGAAACATGTTCCAATAAAAGCAATAGTATTTTCGGACGAATCTTTGCCAAGTATCGATGGCGGTACGGTTTCGTCGCATTTACGCCCTGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCGGTGCTTGAAAGCTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGTCGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCACAGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAGCGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTGGACCATCGGGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCA]
consensusID : consensus_4161#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence
[CCCCGAGGTTGATACGAGTGGACATCGGGTGCTAGTAGACAATTACCTGCCTATCCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGGGTTCAGCATTCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTATCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCATCTACCATCGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTATTCTGCGCACCTTCGGTGCCTCGGCAGGCTCACGGCAAAATTCCTTTGGCAGCTAAGGGCGTAGCACTTGGATCGATGCAAGGTGCAGTCCGCCTAAGCTACTGAAAACAATTCTTCTGTTGTGGGTGTATGGAAGCAATAACCCTCTCCCTCCCCCACGGTGTACGTTAGTGGTGTACTTCGAAGGACAATGTAATGTTTGTGCATAGATCAATAATGAAACACATTCTGCGGGAGTGAGGCGAA]
[+] EMBL AL930867 [CCCCGAGGTTGATACGAGTGGACATCGGGTGCTAGTAGACAATTACCTGCCTATCCCGCCGGCGGTTTCACTACCAAAGCCTACCCCTATTTGGGTTGCAGCCGGGGTTCAGCATTCAGCAGGTGGTAGCAGTAGTGTGATTAGTAGTGGCGCGCTATCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCATCTACCATCGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTATTCTGCGCACCTTCGGTGCCTCGGCAGGCTCACGGCAAAATTCCTTTGGCAGCTAAGGGCGTAGCACTTGGATCGATGCAAGGTGCAGTCCGCCTAAGCTACTGAAAACAATTCTTCTGTTGTGGGTGTATGGAAGCAATAACCCTCTCCCTCCCCCACGGTGTACGTTAGTGGTGTACTTCGAAGGACAATGTAATGTTTGTGCATAGATCAATAATGAAACACATTCTGCGGGAGTGAGGCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4161#0 ------------------------------------------------------------
consensus_4161#1 CCGCGCTGGTGTACCATCGTCTTCGATGTCGCTGAAACATGTTCCAATAAAAGCAATAGT 60
consensus_4161#2 -----------------------------CCCCGAGGTTGATACGAGTGGACATCG-GGT 30
consensus_4161#0 --------------CCACGCGTCCGATCGATGGCGGTACGGTTTCGTCGCATTTACGCCC 46
consensus_4161#1 ATTTTCGGACGAATCTTTGCCAAGTATCGATGGCGGTACGGTTTCGTCGCATTTACGCCC 120
consensus_4161#2 GCTAGTAGACAATTACCTGCCTA-TCCCGCCGGCGGTTTCACTAC-CAAAGCCTAC-CCC 87
** ** ****** * * *** ***
consensus_4161#0 TGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCG----GTGCTTGAAAG 102
consensus_4161#1 TGCTACACCTTCGTCCCTTCGTCCGAATGCTTCACTGACTGACCG----GTGCTTGAAAG 176
consensus_4161#2 TATTTGGGTTGCAGCCGGGGTTCAGCATTCAGCAGGTGGTAGCAGTAGTGTGATTAGTAG 147
* * * * ** ** * ** * ** * * * *** ** **
consensus_4161#0 CTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGT 162
consensus_4161#1 CTGCGGAGGAGGAGGAGGAGGAAGAAGATTGTTCCTTACCTTCCCCACCACCTCCACCGT 236
consensus_4161#2 TGGCGCGCTATCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGCATCTACCAT 207
*** * * * * * * * *** * ** * *** * ** *** *
consensus_4161#0 CGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCAC 222
consensus_4161#1 CGTTACAAACGGTACCAGTAATGCAAATGCAAGCGCTTCACTTACACCAGCCCGTCCCAC 296
consensus_4161#2 CGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTATTCTGCGCAC 267
** * ******* *** * *** * ** * * ***
consensus_4161#0 AGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAG 282
consensus_4161#1 AGTATCAGCAGGATCTATCGCACGGCACGGACCGTTCCTGCTTTTCCCCACCGCCCACAG 356
consensus_4161#2 CTTCGGTGCCTCGGCAGGCTCACGGCAAA----ATTCCT--TTGGCAGCTAAGGGCGTAG 321
* ** * * ******* ***** ** * * * * **
consensus_4161#0 CGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTG 342
consensus_4161#1 CGATCGTGACCACCACTACTAGCCTGTTGCATTCCACTGGAGCGCATGCGATACCGAGTG 416
consensus_4161#2 CACTTG-GATCGATGCAA-------GGTGCAGTCCGCCTAAGCTACTG--AAAACAATTC 371
* * * ** * * * * **** *** * *** ** * * * * *
consensus_4161#0 GACCATCG--GGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAA 400
consensus_4161#1 GACCATCG--GGTGCTAGTAGACAGTTGCCTGCCTATCCGCCGGCGGTTTCACTACCAAA 474
consensus_4161#2 TTCTGTTGTGGGTGTATGGAAGCAATAACCCTCTCCCTCCCCCACGGTGT-ACGTTAGTG 430
* * * **** * * ** * ** * * ** **** * **
consensus_4161#0 GCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGT 460
consensus_4161#1 GCCTACCCCTATTTGGGTTGCAGCCGGAGTTCAGCATCCAGCAGGTGGTAGCAGTAGTGT 534
consensus_4161#2 GTGTACTTCGA---AGGACAATGTAATGTTTGTGCATAGATCAATAATGAAACACATTCT 487
* *** * * ** * ** **** * ** * * * *
consensus_4161#0 GATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGC 520
consensus_4161#1 GATTAGTAGTGGCGCGCTAGCCAGGGAACGGTCAGTGCCGGTCCATGGCTATTCGACCGC 594
consensus_4161#2 G--CGGGAGTGAGGCGAA------------------------------------------ 503
* * **** ***
consensus_4161#0 ATCTACCATCGCCGTTGCTACTGGCAGTAATAGCCCGGCAGTGGTTTCGACTGTGCCTAT 580
consensus_4161#1 A----------------------------------------------------------- 595
consensus_4161#2 ------------------------------------------------------------
consensus_4161#0 TCTGCGCACCTTCGGTGCCTCGGCAGGCTCACGGCAAAATTCCTTTGGCAGCTAAGGGCG 640
consensus_4161#1 ------------------------------------------------------------
consensus_4161#2 ------------------------------------------------------------
consensus_4161#0 TAGCACTGCAAGGTCGATGCAAGGTGCAGTCCCTCTAAGCTACTGAAAACAATTCTTCTG 700
consensus_4161#1 ------------------------------------------------------------
consensus_4161#2 ------------------------------------------------------------
consensus_4161#0 TTGTGGGT 708
consensus_4161#1 --------
consensus_4161#2 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||