cluster # 4164

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Anopheles gambiae
cluster # 4164 cluster # 4164 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4164#0 length = 838 sequences # 1

consensus_4164#1 length = 807 sequences # 2

consensusID : consensus_4164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 838
fasta sequence

                              [ATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGGTGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGCGGTGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCCAAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGGATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AF437888             [ATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGGTGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGCGGTGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCCAAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGGATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4164#0
ATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGGTGGCGATC
ATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGCGGTGGGATTT
TATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGAC
GCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCCAAGTTCAA
AGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACT
CAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAAT
CAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAA
GGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGA
CAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCC
CTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGGATGAAGCG
ATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCT
TACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGA
AAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAACAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_4164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 807
fasta sequence

                              [AATAAAACATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGGTGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGTGGTGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCCAAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGGATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTG]

[+] EMBL CNS08PQX             [AATAAAACATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGGTGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGTGGTGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCCAAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGGATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTG]
[-] EMBL CNS08PQY             [                                                          GGTGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGTGGTGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGACGCGAAAACAACTGATCAATTCGATGGACTTGATGCGTTCGGCGTGCGCTCCCAAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAAGGCGAAGGAAGCGATCAACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCCCTGATGGTGTTGGCGCGTCGATCGTTGGCAGAATGTTCGTGATCGGTCCGGGATGAAGCGATCCGGCACCGGGATTGAAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAATCACG                                            ]




>consensus_4164#1
AATAAAACATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGG
TGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGTGG
TGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGT
GCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCC
AAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGAT
CGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAG
GGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATG
CGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGAC
TCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTT
CTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGG
ATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAG
CATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGT
AAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAAAAAAAAAAA
AAAAAAAGGCCACATGTGCCCGGGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4164#0      --------ATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGG 52
consensus_4164#1      AATAAAACATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGG 60
                              ****************************************************

consensus_4164#0      TGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGCGG 112
consensus_4164#1      TGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGTGG 120
                      ********************************************************* **

consensus_4164#0      TGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGT 172
consensus_4164#1      TGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGT 180
                      ************************************************************

consensus_4164#0      GCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCC 232
consensus_4164#1      GCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCC 240
                      ************************************************************

consensus_4164#0      AAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGAT 292
consensus_4164#1      AAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGAT 300
                      ************************************************************

consensus_4164#0      CGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAG 352
consensus_4164#1      CGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAG 360
                      ************************************************************

consensus_4164#0      GGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATG 412
consensus_4164#1      GGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATG 420
                      ************************************************************

consensus_4164#0      CGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGAC 472
consensus_4164#1      CGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGAC 480
                      ************************************************************

consensus_4164#0      TCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTT 532
consensus_4164#1      TCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTT 540
                      ************************************************************

consensus_4164#0      CTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGG 592
consensus_4164#1      CTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGG 600
                      ************************************************************

consensus_4164#0      ATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAG 652
consensus_4164#1      ATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAG 660
                      ************************************************************

consensus_4164#0      CATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGT 712
consensus_4164#1      CATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGT 720
                      ************************************************************

consensus_4164#0      AAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAACAAAAAAAA 772
consensus_4164#1      AAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAAAAAAAAAAA 780
                      *************************************************** ********

consensus_4164#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 832
consensus_4164#1      AAAAAAAGGCCACATGTGCCCGGGCTG--------------------------------- 807
                      *******    * *                                              

consensus_4164#0      AAAAAA 838
consensus_4164#1      ------