cluster # 4166

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Anopheles gambiae
cluster # 4166 cluster # 4166 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4166#0 length = 694 sequences # 2

consensus_4166#1 length = 692 sequences # 1

consensusID : consensus_4166#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 694
fasta sequence

                              [CCGGGCAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTCCACACCCCATCCCACAACTGGCTTTTCCCGCAGCAAGCAATTGCGACTGGCTATTTTAGTGCGAAAATCGGTGGATATGTGGTGGACATACAGGACATACAGTAAAATTGCTCATTTTGTGAAGCAGTTGTGGTCGTTGTGAGCCG-AAAAAAGAAGGGAGTCGAGCAAAGAGGAGATCGATTAGCAGTGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATCATGTTACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACGAGCGGCAGTGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGTGAAGCGAGAAGCGAACGAAACGGAACGAAAAAAGTAAACCAGT--GTGAGAGAGAGAGTGAGAAAGAGTGAGTGGCAAAGGACGTA-GGAAGAGTGAAGTGAAGTAGTAGTGATCAATTAAAAAATGATAGCATGGGCCTCTG]

[+] EMBL BM608129             [CCGGGCAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTCCACACCCCATCCCACAACTGGCTTTTCCCGCAGCAAGCAATTGCGACTGGCTATTTTAGTGCGAAAATCGGTGGATATGTGGTGGACATACAGGACATACAGTAAAATTGCTCATTTTGTGAAGCAGTTGTGGTCGTTGTGAGCCG AAAAAAGAAGGGAGTCGAGCAAAGAGGAGATCGATTAGCAGTGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATCATGTTACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACGAGCGGCAGTGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGTGAAGCGAGAAGCGAACGAAACGGAACGAAAAAAGTAAACCAGT  GTGAGAGAGAGAGTGAGAAAGAGTGAGTGGCAAAGGACGTA GGAAGAGTGAAGTGAAGTAGTAGTGATCAATTAAAAAATGATAGCATGGGCCTCTG]
[+] EMBL BM587714             [   ccgacggcaGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTGTCCACACCCCATCCCACACCTGGCTTTTCCCGCAGCAAGCAATTGCGACTGGCTATTTTAGTGCGAAAATCGGTGGATATGTGGTGGACATACAGGACATACAGTAAAATTGCTCATTTTGTGAAACAGTTGTGGTCGTTGTGAGCCGAAAAAAAGAAGCGAGTCGAGCAAAAAGGAGATCGATCAGCAGTGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGAAAGCTTGTGGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGAGGATGTTACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACGAGCGGCAGTGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGT         AGCGAACGAAACGGAACGAAAAAAGTAAACGAGTGAGAGAGAGAGAGAGTGAGAGGGAGTGAGTGGCAAAGGACGTATAAAAGAGTGAAGTGAAGCAGTAGTGATCAAT                         ]




>consensus_4166#0
CCGGGCAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTC
CACACCCCATCCCACAACTGGCTTTTCCCGCAGCAAGCAATTGCGACTGGCTATTTTAGT
GCGAAAATCGGTGGATATGTGGTGGACATACAGGACATACAGTAAAATTGCTCATTTTGT
GAAGCAGTTGTGGTCGTTGTGAGCCGAAAAAAGAAGGGAGTCGAGCAAAGAGGAGATCGA
TTAGCAGTGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGG
CCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATCATGTT
ACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTT
TAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACGAGC
GGCAGTGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGT
TGGTGGTGTAGTGTGAAGCGAGAAGCGAACGAAACGGAACGAAAAAAGTAAACCAGTGTG
AGAGAGAGAGTGAGAAAGAGTGAGTGGCAAAGGACGTAGGAAGAGTGAAGTGAAGTAGTA
GTGATCAATTAAAAAATGATAGCATGGGCCTCTG

consensusID : consensus_4166#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [CCGAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTCCACACCCCATCCCACACCTGGCTTTTCCCGCAGCAAGCAATTGAGACTGGATTTAGTGCGAAAATCGGTGGATATGTGGTGGACATACAGGAAACAGTAAAATTGCTCATTTTGTGAAAAAGTTGTGGTCGTTGTGAGCCGAAAAAAAGAAGTGAGTCGAGCGAAGAGGAGATCGATCAGCAGCGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATGATGTTACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACTAGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGTAGCGAACGAAACGGAACGAAAAAAGTAAACGAGTGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGTGAGTGGCAAAGGACGTAGGAAGAGTGAAGTGTAGTAGTAGTGATCCATTAAAAAATGATAGCATGGGCCTCTGCTGGAATGTG]

[+] EMBL BM651013             [CCGAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTCCACACCCCATCCCACACCTGGCTTTTCCCGCAGCAAGCAATTGAGACTGGATTTAGTGCGAAAATCGGTGGATATGTGGTGGACATACAGGAAACAGTAAAATTGCTCATTTTGTGAAAAAGTTGTGGTCGTTGTGAGCCGAAAAAAAGAAGTGAGTCGAGCGAAGAGGAGATCGATCAGCAGCGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATGATGTTACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACTAGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGTAGCGAACGAAACGGAACGAAAAAAGTAAACGAGTGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGTGAGTGGCAAAGGACGTAGGAAGAGTGAAGTGTAGTAGTAGTGATCCATTAAAAAATGATAGCATGGGCCTCTGCTGGAATGTG]




>consensus_4166#1
CCGAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTCCAC
ACCCCATCCCACACCTGGCTTTTCCCGCAGCAAGCAATTGAGACTGGATTTAGTGCGAAA
ATCGGTGGATATGTGGTGGACATACAGGAAACAGTAAAATTGCTCATTTTGTGAAAAAGT
TGTGGTCGTTGTGAGCCGAAAAAAAGAAGTGAGTCGAGCGAAGAGGAGATCGATCAGCAG
CGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTGGCCGGTGA
AAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATGATGTTACTTTTT
TCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGTTTAGTGTG
CACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACTAGCGACAGTG
CGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGGTTGGTGGTGTAGTGTA
GCGAACGAAACGGAACGAAAAAAGTAAACGAGTGAGAGAGAGAGAGAGAGAGAGAGAGTG
AGAGAGAGTGAGTGGCAAAGGACGTAGGAAGAGTGAAGTGTAGTAGTAGTGATCCATTAA
AAAATGATAGCATGGGCCTCTGCTGGAATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4166#0      CCGGGCAAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTC 60
consensus_4166#1      CCG---AAAACGGCAGCAGCCAGCAGTACAGTGTCGCGCTCGGTGGTGCGTACGGTTTTC 57
                      ***   ******************************************************

consensus_4166#0      CACACCCCATCCCACAACTGGCTTTTCCCGCAGCAAGCAATTGCGACTGGCTATTTTAGT 120
consensus_4166#1      CACACCCCATCCCACACCTGGCTTTTCCCGCAGCAAGCAATTGAGACTGGAT---TTAGT 114
                      **************** ************************** ****** *   *****

consensus_4166#0      GCGAAAATCGGTGGATATGTGGTGGACATACAGGACATACAGTAAAATTGCTCATTTTGT 180
consensus_4166#1      GCGAAAATCGGTGGATATGTGGTGGACATACAGGAAA--CAGTAAAATTGCTCATTTTGT 172
                      *********************************** *  *********************

consensus_4166#0      GAAGCAGTTGTGGTCGTTGTGAGCCGAAAAAA-GAAGGGAGTCGAGCAAAGAGGAGATCG 239
consensus_4166#1      GAAAAAGTTGTGGTCGTTGTGAGCCGAAAAAAAGAAGTGAGTCGAGCGAAGAGGAGATCG 232
                      ***  *************************** **** ********* ************

consensus_4166#0      ATTAGCAGTGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTG 299
consensus_4166#1      ATCAGCAGCGCGTGGGAGTACGAGTGCAGCTTTATATGTTACGCATCGAAACGTGTAGTG 292
                      ** ***** ***************************************************

consensus_4166#0      GCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATCATGT 359
consensus_4166#1      GCCGGTGAAAGCTTGTCGGGGAGGTGGGATGGTCGGGGACGTGAAGTGGATAGATGATGT 352
                      ******************************************************* ****

consensus_4166#0      TACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGT 419
consensus_4166#1      TACTTTTTTCCTGCCACTGATCACTAACCGAACGAATGAGTGTGTTCTTCCGCGAAAAGT 412
                      ************************************************************

consensus_4166#0      TTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACGAG 479
consensus_4166#1      TTAGTGTGCACAGCAACGAGCTAGTAGGCTTTGAAGTGGTTGTCAATAATCGATTACTAG 472
                      ********************************************************* **

consensus_4166#0      CGGCAGTGCGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGG 539
consensus_4166#1      --------CGACAGTGCGACAGTGGAGCTAAGCGTCCTCGCCAAGTCCTGGCCTAAGTGG 524
                              ****************************************************

consensus_4166#0      TTGGTGGTGTAGTGTGAAGCGAGAAGCGAACGAAACGGAACGAAAAAAGTAAACCAGTGT 599
consensus_4166#1      TTGGTGGTGTAGTGT---------AGCGAACGAAACGGAACGAAAAAAGTAAACGAGTGA 575
                      ***************         ****************************** **** 

consensus_4166#0      GAGAGAGAGAG------------TGAGAAAGAGTGAGTGGCAAAGGACGTAGGAAGAGTG 647
consensus_4166#1      GAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGTGAGTGGCAAAGGACGTAGGAAGAGTG 635
                      ***********            ***** *******************************

consensus_4166#0      AAGTGAAGTAGTAGTGATCAATTAAAAAATGATAGCATGGGCCTCTG---------- 694
consensus_4166#1      AAGTGTAGTAGTAGTGATCCATTAAAAAATGATAGCATGGGCCTCTGCTGGAATGTG 692
                      ***** ************* ***************************