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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1189 fasta sequence
[CCGCAAAAAGCACCAGTCCATGGCGACACCACTGACCGACGGGTATGCCGCGCATCTCAGCTCGCTGATGACGGTGGGCGGCTCCCGGCCGGCGCAGGGCAACGCCCGCATGGTTATACCGCGCAGCTGCTTCAACCTGCCCGGCCAAAATCAATCCATTCGCAGGCGAAGGTTCGTGCCGGGCTAGGCTGGTGGGCGCGGGCGGAGCCCAGCGCGAACGGACACCGGAACCGGCACATGGAACCAATCGAATCAACACTAACCCCAAGGCAGCCAACAATATCCTAAACAGGGCCCCAGCAGCAACCCTTGCAATCCATGCCAAAAAGAAGAAACTGGAGGAAGAGGAGGAGGAATAAGAAGAAAAAAAGGGGGGGGGAGGTAATACCTAAAGCCAGTAACCAAGCGGAGAGCGACAGCGTATAGGAAGAGAACGTAAAAGAAGAGGAGAGAAGAACAAGGGGGAATAGTAGTAAACATATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAATAAGTGGAGTGGAGTGGAAGGCACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCGTAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTTTTTTTGGTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCTGTCTCTTCCTCGATCTCTCATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCCCTCTCCTCAGCAATCTATGATATATATAATATATATTAGCCAATGGCAAAGGTGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAGGAACTGTTATGTGTTATGTAGCGAAACTTAACTATAGTGAGAATGATATCATCAGTCGAACATGGTTCGAATAGAAAAGGAAACACACACACACACACCAACACGATACTCAAGCGATCACCAACTATCACTGGCTAGTGACAGGCGACTCTAAGGAAGCTTGGCAATAAGAAGCGAACCCTACAGCAATAATCCTGCGCCCCTGCATTATCTCTCTCTCTCTCTCGCTTTTCATTCCATACATATTCCTATACACTCCCATCCACCCCACCCCTCTCCTATCTCCTGTCTTTGTCTTA]
[+] EMBL BM647058 [CCGCAAAAAGCACCAGTCCATGGCGACACCACTGACCGACGGGTATGCCGCGCATCTCAGCTCGCTGATGACGGTGGGCGGCTCCCGGCCGGCGCAGGGCAACGCCCGCATGGTTATACCGCGCAGCTGCTTCAACCTGCCCGGCCAAAATCAATCCATTCGCAGGCGAAGGTTCGTGCCGGGCTAGGCTGGTGGGCGCGGGCGGAGCCCAGCGCGAACGGACACCGGAACCGGCACATGGAACCAATCGAATCAACACTAACCCCAAGGCAGCCAACAATATCCTAAACAGGGCCCCAGCAGCAACCCTTGCAATCCATGCCAAAAAGAAGAAACTGGAGGAAGAGGAGGAGGAATAAGAAGAAAAAAAGGGGGGGGGAGGTAATACCTAAAGCCAGTAACCAAGCGGAGAGCGACAGCGTATAGGAAGAGAACGTAAAAGAAGAGGAGAGAAGAACAAGGGGGAATAGTAGTAAACATATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAATAAGTGGAGTGGAGTGGAAGGCACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCGTAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTTTTTTTGGTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCT ]
[+] EMBL BX627864 [ GGGAATAGTAGTAAACATATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAATAAGTGGAGTGGAGTGGAAGGCACGAGAAGCATGAGCAAAAGATGGAGCAGCGAACCCCGTAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAACACACGTGCACCAGTTTTTTTGTTCGTTTCTCTCTCGCTCTCTCGGTCTCCCTCTCTGTCTCTTCCTCGATCTCTCATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCCCTCTCCTCAGCAATCTATGATATATATAATATATATTAGCCAATGGCAAAGGTGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAGGAACTGTTATGTGTTATGTAGCGAAACTTAACTATAGTGAGAATGATATCATCAGTCGAACATGGTTCGAATAGAAAAGGAAACACACACACACACACCAACACGATACTCAAGCGATCACCAACTATCACTGGCTAGTGACAGGCGACTCTAAGGAAGCTTGGCAATAAGAAGCGAACCCTACAGCAATAATCCTGCGCCCCTGCATTATCTCTCTCTCTCTCTCGCTTTTCATTCCATACATATTCCTATACACTCCCATCCACCCCACCCCTCTCCTATCTCCTGTCTTTGTCTTA]
consensusID : consensus_4176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[CCGCTAAAGCCAGTAACCAAACGGAGAGCGACAGCGTATAGGAAGAGAACGTAAAAGAAGAGGAGAGCAGAACAAGGGGGAATAGTAGTAAACATATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAATAAGTGGAGTGGAGTGGAAGCACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCGTAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTTTTTTTGTTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCTGTCTCTTCCTCGATCTCTCATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCCTCTCCTCAGCAATCTATGATATATATATATATATATAATATATATTAGCCAATGGCAAAGGTGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAGGAACTGTTATGTGTTATGTAGCGAAACT]
[+] EMBL BM653101 [CCGCTAAAGCCAGTAACCAAACGGAGAGCGACAGCGTATAGGAAGAGAACGTAAAAGAAGAGGAGAGCAGAACAAGGGGGAATAGTAGTAAACATATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAATAAGTGGAGTGGAGTGGAAGCACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCGTAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTTTTTTTGTTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCTGTCTCTTCCTCGATCTCTCATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCCTCTCCTCAGCAATCTATGATATATATATATATATATAATATATATTAGCCAATGGCAAAGGTGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAGGAACTGTTATGTGTTATGTAGCGAAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4176#0 CCGCAAAAAGCACCAGTCCATGGCGACACCACTGACCGACGGGTATGCCGCGCATCTCAG 60
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 CTCGCTGATGACGGTGGGCGGCTCCCGGCCGGCGCAGGGCAACGCCCGCATGGTTATACC 120
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 GCGCAGCTGCTTCAACCTGCCCGGCCAAAATCAATCCATTCGCAGGCGAAGGTTCGTGCC 180
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 GGGCTAGGCTGGTGGGCGCGGGCGGAGCCCAGCGCGAACGGACACCGGAACCGGCACATG 240
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 GAACCAATCGAATCAACACTAACCCCAAGGCAGCCAACAATATCCTAAACAGGGCCCCAG 300
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 CAGCAACCCTTGCAATCCATGCCAAAAAGAAGAAACTGGAGGAAGAGGAGGAGGAATAAG 360
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 AAGAAAAAAAGGGGGGGGGAGGTAATACCTAAAGCCAGTAACCAAGCGGAGAGCGACAGC 420
consensus_4176#1 -------------------------CCGCTAAAGCCAGTAACCAAACGGAGAGCGACAGC 35
***************** **************
consensus_4176#0 GTATAGGAAGAGAACGTAAAAGAAGAGGAGAGAAGAACAAGGGGGAATAGTAGTAAACAT 480
consensus_4176#1 GTATAGGAAGAGAACGTAAAAGAAGAGGAGAGCAGAACAAGGGGGAATAGTAGTAAACAT 95
******************************** ***************************
consensus_4176#0 ATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAA 540
consensus_4176#1 ATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAA 155
************************************************************
consensus_4176#0 TAAGTGGAGTGGAGTGGAAGGCACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCG 600
consensus_4176#1 TAAGTGGAGTGGAGTGGAAG-CACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCG 214
******************** ***************************************
consensus_4176#0 TAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTT 660
consensus_4176#1 TAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTT 274
************************************************************
consensus_4176#0 TTTTTGGTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCTGTCTCTTCCTCGATCTCTC 720
consensus_4176#1 TTTTTGTTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCTGTCTCTTCCTCGATCTCTC 334
****** *****************************************************
consensus_4176#0 ATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCCCT 780
consensus_4176#1 ATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCC-T 393
********************************************************** *
consensus_4176#0 CTCCTCAGCAATCTATGATATATATA----------ATATATATTAGCCAATGGCAAAGG 830
consensus_4176#1 CTCCTCAGCAATCTATGATATATATATATATATATAATATATATTAGCCAATGGCAAAGG 453
************************** ************************
consensus_4176#0 TGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAG 890
consensus_4176#1 TGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAG 513
************************************************************
consensus_4176#0 GAACTGTTATGTGTTATGTAGCGAAACTTAACTATAGTGAGAATGATATCATCAGTCGAA 950
consensus_4176#1 GAACTGTTATGTGTTATGTAGCGAAACT-------------------------------- 541
****************************
consensus_4176#0 CATGGTTCGAATAGAAAAGGAAACACACACACACACACCAACACGATACTCAAGCGATCA 1010
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 CCAACTATCACTGGCTAGTGACAGGCGACTCTAAGGAAGCTTGGCAATAAGAAGCGAACC 1070
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 CTACAGCAATAATCCTGCGCCCCTGCATTATCTCTCTCTCTCTCTCGCTTTTCATTCCAT 1130
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 ACATATTCCTATACACTCCCATCCACCCCACCCCTCTCCTATCTCCTGTCTTTGTCTTA 1189
consensus_4176#1 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||