cluster # 4186

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Anopheles gambiae
cluster # 4186 cluster # 4186 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4186#0 length = 731 sequences # 1

consensus_4186#1 length = 569 sequences # 2

consensusID : consensus_4186#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 731
fasta sequence

                              [ACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGAGTGAGTTTTCTGCGTGACTTGGTGCAAGATATGAGCTAGTTCTAGGNTACTGTGGAAGTTTTTGTAATGTTGAGCCTAAAGTTCTTAATAATTGGATTAACAATATAATATCTGTGCCAGTGAACTTAAACATGATCAAAATAGACCCGAAAAGTGCACACATAACATTAAGTGCTTCTAGCTAAACATTTAGTTTCTATTCTTGAGTCCTTTACATCATCCAGATTCCCAAAAGAACCCAAGTTCTAACGCCTATCTGTTACTTCAATTTATTCCAAACGATAGTTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAACTACCAGTATG]

[+] EMBL BX628105             [ACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGAGTGAGTTTTCTGCGTGACTTGGTGCAAGATATGAGCTAGTTCTAGGNTACTGTGGAAGTTTTTGTAATGTTGAGCCTAAAGTTCTTAATAATTGGATTAACAATATAATATCTGTGCCAGTGAACTTAAACATGATCAAAATAGACCCGAAAAGTGCACACATAACATTAAGTGCTTCTAGCTAAACATTTAGTTTCTATTCTTGAGTCCTTTACATCATCCAGATTCCCAAAAGAACCCAAGTTCTAACGCCTATCTGTTACTTCAATTTATTCCAAACGATAGTTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAACTACCAGTATG]




>consensus_4186#0
ACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAA
CTCGTTGAGCCAGTGGTATAATACAATGTTGCGAGTGAGTTTTCTGCGTGACTTGGTGCA
AGATATGAGCTAGTTCTAGGNTACTGTGGAAGTTTTTGTAATGTTGAGCCTAAAGTTCTT
AATAATTGGATTAACAATATAATATCTGTGCCAGTGAACTTAAACATGATCAAAATAGAC
CCGAAAAGTGCACACATAACATTAAGTGCTTCTAGCTAAACATTTAGTTTCTATTCTTGA
GTCCTTTACATCATCCAGATTCCCAAAAGAACCCAAGTTCTAACGCCTATCTGTTACTTC
AATTTATTCCAAACGATAGTTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCA
GTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGA
GCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCA
CTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGA
TAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAG
CGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAA
CTACCAGTATG

consensusID : consensus_4186#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 569
fasta sequence

                              [GGTACAGACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGATTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAACTACCAGTATGGCCAGTACGAATCGGGTTACGCCAAGAAGTACGACGAGTACAACGCGTACCCGAAGTACAGCTTCGAGTACGGTGTCGATGATCCGCACACCGGCGACCACAAGAAGCAGTGGGAA]

[+] EMBL BX628127             [GGTACAGACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGATTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAACTACCAGTATGGCCAGTACGAATCGGGTTACGCCAAGAAGTACGACGAGTACAACGCGTACCCGAAGTACAGCTTCGAGTACGGTGTCGATGATCC                               ]
[+] EMBL BX626923             [                                   GTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGATTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAACTACCAGTATGGCCAGTACGAATCGGGTTACGCCAAGAAGTACGACGAGTACAACGCGTACCCGAAGTACAGCTTCGAGTACGGTGTCGATGATCCGCACACCGGCGACCACAAGAAGCAGTGGGAA]




>consensus_4186#1
GGTACAGACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAA
AGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGATTTGTGTCCGCTATTGCCA
TCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGA
CGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGC
CAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGC
CGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATG
AAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGC
ACGGTTCTCATCTGTATGATAACTACCAGTATGGCCAGTACGAATCGGGTTACGCCAAGA
AGTACGACGAGTACAACGCGTACCCGAAGTACAGCTTCGAGTACGGTGTCGATGATCCGC
ACACCGGCGACCACAAGAAGCAGTGGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4186#0      ACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAA 60
consensus_4186#1      ------------------------------------------------------------
                                                                                  

consensus_4186#0      CTCGTTGAGCCAGTGGTATAATACAATGTTGCGAGTGAGTTTTCTGCGTGACTTGGTGCA 120
consensus_4186#1      ------------------------------------------------------------
                                                                                  

consensus_4186#0      AGATATGAGCTAGTTCTAGGNTACTGTGGAAGTTTTTGTAATGTTGAGCCTAAAGTTCTT 180
consensus_4186#1      ------------------------------------------------------------
                                                                                  

consensus_4186#0      AATAATTGGATTAACAATATAATATCTGTGCCAGTGAACTTAAACATGATCAAAATAGAC 240
consensus_4186#1      ------------------------------------------------------------
                                                                                  

consensus_4186#0      CCGAAAAGTGCACACATAACATTAAGTGCTTCTAGCTAAACATTTAGTTTCTATTCTTGA 300
consensus_4186#1      ----------------------------------GGTACAGACCTAG---CAGTTCCGGA 23
                                                        * ** * *  ***   *  ***  **

consensus_4186#0      GTCCTTTACATCATCCAGATTCCCAAAAGAACCCAAGTTCTAACGCCTATCTGTTACTTC 360
consensus_4186#1      G-CAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTG 82
                      * *      * **   * *          *   **     * *  *   *        * 

consensus_4186#0      AATTTATTCCAAACGATAGTTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCA 420
consensus_4186#1      GTATAATACAATGTTGCGATTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCA 142
                         * ** * *        *****************************************

consensus_4186#0      GTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGA 480
consensus_4186#1      GTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGA 202
                      ************************************************************

consensus_4186#0      GCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCA 540
consensus_4186#1      GCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCA 262
                      ************************************************************

consensus_4186#0      CTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGA 600
consensus_4186#1      CTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGA 322
                      ************************************************************

consensus_4186#0      TAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAG 660
consensus_4186#1      TAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAG 382
                      ************************************************************

consensus_4186#0      CGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAA 720
consensus_4186#1      CGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAA 442
                      ************************************************************

consensus_4186#0      CTACCAGTATG------------------------------------------------- 731
consensus_4186#1      CTACCAGTATGGCCAGTACGAATCGGGTTACGCCAAGAAGTACGACGAGTACAACGCGTA 502
                      ***********                                                 

consensus_4186#0      ------------------------------------------------------------
consensus_4186#1      CCCGAAGTACAGCTTCGAGTACGGTGTCGATGATCCGCACACCGGCGACCACAAGAAGCA 562
                                                                                  

consensus_4186#0      -------
consensus_4186#1      GTGGGAA 569