cluster # 4209

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Anopheles gambiae
cluster # 4209 cluster # 4209 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4209#0 length = 709 sequences # 1

consensus_4209#1 length = 405 sequences # 1
consensus_4209#2 length = 216 sequences # 1

consensusID : consensus_4209#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 709
fasta sequence

                              [CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAAGGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGCGCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTGTGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCGCAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAAAAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCACCAAACACACACACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTTGTGGGTGAAAGCCAATGATGTGGGGTGTAAAAGAAGGAAGGAACGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTAAATGTGTATACCTACTGTTCGTTTTTCGGCCCGTTTTTTTCCGCATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGATGAAGATGCGATGCTGTGTTTGTACATATATGTATCACTAAAGCAAACGAAACGATNACACAAAGAGAG]

[+] EMBL AL933556             [CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAAGGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGCGCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTGTGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCGCAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAAAAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCACCAAACACACACACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTTGTGGGTGAAAGCCAATGATGTGGGGTGTAAAAGAAGGAAGGAACGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTAAATGTGTATACCTACTGTTCGTTTTTCGGCCCGTTTTTTTCCGCATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGATGAAGATGCGATGCTGTGTTTGTACATATATGTATCACTAAAGCAAACGAAACGATNACACAAAGAGAG]




>consensus_4209#0
CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAA
GGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGC
GCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTG
TGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCG
CAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAA
AAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCACCAAACACACACACAGGGA
TGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGT
GGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTTGTGGGTGAA
AGCCAATGATGTGGGGTGTAAAAGAAGGAAGGAACGAAGGAAGGTTCTTCCCCTCTTCAC
TAGCCCCTCTAACCTTAAATGTGTATACCTACTGTTCGTTTTTCGGCCCGTTTTTTTCCG
CATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGATGAAGATGCGATGCTGTGTT
TGTACATATATGTATCACTAAAGCAAACGAAACGATNACACAAAGAGAG

consensusID : consensus_4209#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGAAAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTGGTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTCTTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTTTNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCAGCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA]

[+] EMBL BX469130             [CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGAAAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTGGTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTCTTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTTTNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCAGCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA]




>consensus_4209#1
CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAG
GGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGA
AAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTG
GTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTC
TTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTT
TNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCA
GCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA

consensusID : consensus_4209#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGCTTAGAAGAGAGATTACGAAGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGATCGTTGTGGATGAAACCCTGTATGTGGGGTGTAATTGAAAGGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTGAAT]

[+] EMBL BM579318             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGCTTAGAAGAGAGATTACGAAGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGATCGTTGTGGATGAAACCCTGTATGTGGGGTGTAATTGAAAGGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTGAAT]




>consensus_4209#2
CCGCCCACGCGTCCGCCCACGCGTCCGGTTGCTTAGAAGAGAGATTACGAAGAAGAAGAA
GAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTG
CTGGCATCGATCGTTGTGGATGAAACCCTGTATGTGGGGTGTAATTGAAAGGAAGGAAGG
TTCTTCCCCTCTTCACTAGCCCCTCTAACCTTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4209#0      CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAA 60
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      GGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGC 120
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      GCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTG 180
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      TGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCG 240
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      CAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAA 300
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      AAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCAC-CAA-ACACACACA-CAG 357
consensus_4209#2      ----------------------------------CCGCCCACGCGT-CCGCCCACG-C-G 23
consensus_4209#1      CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAG 60
                                                            ***  *    * * ***  * *

consensus_4209#0      GGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAA--GAAGAAGGACCTGATTAGGA 415
consensus_4209#2      TCCGGTTGCTTAGAAGAGAGATT-ACGAAGAAGAAGAA--GAAGAAGGACCTGATTAGGA 80
consensus_4209#1      GGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGA 120
                          ************* ***   *  * ******* *  ********************

consensus_4209#0      AAGG-TGGTTA-TGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTT-- 471
consensus_4209#2      AAGG-TGGTTA-TGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGA-TCGTT-- 135
consensus_4209#1      AAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTG 180
                      **** ****** **************************************** ****   

consensus_4209#0      GTGGGTGAAAGCCAA-TGATGTGG-GGTGTAA--AAGAAGGAAGGAACGAAGGAAGGTTC 527
consensus_4209#2      GTGGATGAAACCCTG-T-ATGTGG-GGTGTAA--TTGAAAG-------GAAGGAAGGTTC 183
consensus_4209#1      GTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTC 240
                      **** *** * **   * ****** *******    *** *       ************

consensus_4209#0      TTCCCC-TCTTCACTAGCCCCTC--TAACCTT--AAATGTGTATACCTACT--GTTCGTT 580
consensus_4209#2      TTCCCC-TCTTCACTAGCCCCTC--TAACCTT--GAAT---------------------- 216
consensus_4209#1      TTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTT 300
                      ****** **************    ***** *   * *                      

consensus_4209#0      TTTCGGCCCGTTTTTTTCCGCATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGA 640
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      TNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCA 360
                                                                                  

consensus_4209#0      TGAAGATGCGATGCTGTGTTTGTACATATATGTATCACTAAAGCAAACGAAACGATNACA 700
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      GCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA--------------- 405
                                                                                  

consensus_4209#0      CAAAGAGAG 709
consensus_4209#2      ---------
consensus_4209#1      ---------