cluster # 4210

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Anopheles gambiae
cluster # 4210 cluster # 4210 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4210#0 length = 987 sequences # 2

consensus_4210#1 length = 555 sequences # 1

consensusID : consensus_4210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 987
fasta sequence

                              [CCGCGGACGCGTGGGCAAACTCTCATCAGACGTATACATAGAAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTAGTATGTAATTAACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACTCTGACCATATATATATATATATATACATATTCGTACGTGTGCTGAATATTCTTAAAACAAACTCTTTGCGTCGTTCGGATCGTGTGGTCCGGAACGATCGGTTCCACCTAAGTAAACCTCTTTTGCCAAGTAGCATCGGATAATGAATCGGTAAAACGTGAGCCATATTCGTGTAGCTTAGCATGTTTAATCGTTGGTCACTCGTCCAGACTATAATCCATGTTTGGTTCCATTGCGGTCAAACAGAATCGATTATTAGACGTGGACATCGTCGTGTGTCACTGTTAAGTTTTGTTTGCATACGTTGCGCATTGCGTTACATTGTTTTTGTCGATCAGAGGATTGTTTTAAGCGCACTATTTGGTTGCAACTTTCCTATGATTGGCGTGCAGAGCTTACCTTTCATTAAGGTTTGGGTGTGTCTTTAGCACCCATGAACTATTGTACAGGGT-T-TTAAGACGTTAGTTTGCAGCGAACAGGATCCCCCAAAACAGGAACAGGCTTATTTGGCGCGTAACTGAAACAATGTAACCCGGCGAGATATTATTGTTGCTGATTACATTGGAACTTTTATAAACAAACCCGATTTTTCTCCTGGTGCTTTTATTCAAAACTTCCCAATTTAACTCCACGCAAATGGGTTGGACTCCCGGTAACGGCCACGACAATTTAACACNNTTGGCCTGGACTNGCAAGGTCCCGCGTCACATTCGGGGGCGACACAGNTACTTACGGNACAAGGTGGANTCCCGGCGCAGGGTTNAACACCATTNTGATCGCACCCCANTAATTTTTTTACCACGAACAGCCACCTTGGGTGTGCCGG]

[+] EMBL BM620338             [CCGCGGACGCGTGGGCAAACTCTCATCAGACGTATACATAGAAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTAGTATGTAATTAACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACTCTGACCATATATATATATATATATACATATTCGTACGTGTGCTGAATATTCTTAAAACAAACTCTTTGCGTCGTTCGGATCGTGTGGTCCGGAACGATCGGTTCCACCTAAGTAAACCTCTTTTGCCAAGTAGCATCGGATAATGAATCGGTAAAACGTGAGCCATATTCGTGTAGCTTAGCATGTTTAATCGTTGGTCACTCGTCCAGACTATAATCCATGTTTGGTTCCATTGCGGTCAAACAGAATCGATTATTAGACGTGGACATCGTCGTGTGTCACTGTTAAGTTTTGTTTGCATACGTTGCGCATTGCGTTACATTGTTTTTGTCGATCAGAGGATTGTTTTAAGCGCACTATTTGGTTGCAACTTTCCTATGATTGGCGTGCAGAGCTTACCTTTCATTAAGGTTTGGGTGTGTCTTTAGCACCCATGAACTATTGTACAGGGT T TTAAGACGTTAGTTTGCAGCGAA                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AL930887             [                                                                                                                                                                                                                                                                                                                                                    cccgaggTTAATCGTTGGTCAATCGTCCAGACTATAATCCATGTTTGGTTCCATTGCGGTC AACAGAATCGATTATTAAACGTGGACATCGTCGTGTGTCACTGTTAAG TTTGTTTGCATACGTTGCGCATTGCGTTACATTG  TTTGTCGATCAGAGGATTGTTTTAAGCGCACTATTTGGTTGCAACTGTCCTATGATTGGCGTGCAGAGCTTACCTTTCATT AGGTGTGAGTGTGTCTTTTACACCCATGAACTATTGTACAGGTTCTCTAAAGACGTTAGTTTGCAGCGAACAGGATCCCCCAAAACAGGAACAGGCTTATTTGGCGCGTAACTGAAACAATGTAACCCGGCGAGATATTATTGTTGCTGATTACATTGGAACTTTTATAAACAAACCCGATTTTTCTCCTGGTGCTTTTATTCAAAACTTCCCAATTTAACTCCACGCAAATGGGTTGGACTCCCGGTAACGGCCACGACAATTTAACACNNTTGGCCTGGACTNGCAAGGTCCCGCGTCACATTCGGGGGCGACACAGNTACTTACGGNACAAGGTGGANTCCCGGCGCAGGGTTNAACACCATTNTGATCGCACCCCANTAATTTTTTTACCACGAACAGCCACCTTGGGTGTGCCGG]




>consensus_4210#0
CCGCGGACGCGTGGGCAAACTCTCATCAGACGTATACATAGAAGCTCGAAATCGGAATTC
AGCAAAGGAAGCAAAACAAAGCGCATATCTAGTATGTAATTAACCTGTGTAACCTCCTAT
CTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACTCTGACCATATATATATATA
TATATACATATTCGTACGTGTGCTGAATATTCTTAAAACAAACTCTTTGCGTCGTTCGGA
TCGTGTGGTCCGGAACGATCGGTTCCACCTAAGTAAACCTCTTTTGCCAAGTAGCATCGG
ATAATGAATCGGTAAAACGTGAGCCATATTCGTGTAGCTTAGCATGTTTAATCGTTGGTC
ACTCGTCCAGACTATAATCCATGTTTGGTTCCATTGCGGTCAAACAGAATCGATTATTAG
ACGTGGACATCGTCGTGTGTCACTGTTAAGTTTTGTTTGCATACGTTGCGCATTGCGTTA
CATTGTTTTTGTCGATCAGAGGATTGTTTTAAGCGCACTATTTGGTTGCAACTTTCCTAT
GATTGGCGTGCAGAGCTTACCTTTCATTAAGGTTTGGGTGTGTCTTTAGCACCCATGAAC
TATTGTACAGGGTTTTAAGACGTTAGTTTGCAGCGAACAGGATCCCCCAAAACAGGAACA
GGCTTATTTGGCGCGTAACTGAAACAATGTAACCCGGCGAGATATTATTGTTGCTGATTA
CATTGGAACTTTTATAAACAAACCCGATTTTTCTCCTGGTGCTTTTATTCAAAACTTCCC
AATTTAACTCCACGCAAATGGGTTGGACTCCCGGTAACGGCCACGACAATTTAACACNNT
TGGCCTGGACTNGCAAGGTCCCGCGTCACATTCGGGGGCGACACAGNTACTTACGGNACA
AGGTGGANTCCCGGCGCAGGGTTNAACACCATTNTGATCGCACCCCANTAATTTTTTTAC
CACGAACAGCCACCTTGGGTGTGCCGG

consensusID : consensus_4210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [GCAGAATCGCCACGAGGTAACTTAACGAGGATCAACACAGCTAAAATGGAGCGAAATAAAAAACAAACAAACAACTACGAATGTATCGATGGATCAAACTCTCATCAGACGTATACATAGAAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTGTATGTAATTAACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACTCTGACCATATATATATACATATTCGTACGTGTGCTGGAATATTCTTAAAAACAAACTCTTTTGCGTCGTTCGGCATCGGTGTGGGTCTGGGTAACGATCAAGTTNCCACCCGTNAGGTTGANTTCCCGTCCTTTTTGGCCAAGGGTAAGCCAGTCCGGGATTAAGTGGACATTCGGGTACANAAACGGTGAAGCCCACATAATTTCGGTAGGTAGGNCTTTAAGGCAGTGGTTGTTCGACTCCGGTTTGGGTCCAAAGTCGGTACACAGGAAGCCGTAGTNACTCCCAGTGGTTATATGGGTATCCCAAANTATGG]

[+] EMBL BX468819             [GCAGAATCGCCACGAGGTAACTTAACGAGGATCAACACAGCTAAAATGGAGCGAAATAAAAAACAAACAAACAACTACGAATGTATCGATGGATCAAACTCTCATCAGACGTATACATAGAAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTGTATGTAATTAACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACTCTGACCATATATATATACATATTCGTACGTGTGCTGGAATATTCTTAAAAACAAACTCTTTTGCGTCGTTCGGCATCGGTGTGGGTCTGGGTAACGATCAAGTTNCCACCCGTNAGGTTGANTTCCCGTCCTTTTTGGCCAAGGGTAAGCCAGTCCGGGATTAAGTGGACATTCGGGTACANAAACGGTGAAGCCCACATAATTTCGGTAGGTAGGNCTTTAAGGCAGTGGTTGTTCGACTCCGGTTTGGGTCCAAAGTCGGTACACAGGAAGCCGTAGTNACTCCCAGTGGTTATATGGGTATCCCAAANTATGG]




>consensus_4210#1
GCAGAATCGCCACGAGGTAACTTAACGAGGATCAACACAGCTAAAATGGAGCGAAATAAA
AAACAAACAAACAACTACGAATGTATCGATGGATCAAACTCTCATCAGACGTATACATAG
AAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTGTATGTAATTA
ACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACTC
TGACCATATATATATACATATTCGTACGTGTGCTGGAATATTCTTAAAAACAAACTCTTT
TGCGTCGTTCGGCATCGGTGTGGGTCTGGGTAACGATCAAGTTNCCACCCGTNAGGTTGA
NTTCCCGTCCTTTTTGGCCAAGGGTAAGCCAGTCCGGGATTAAGTGGACATTCGGGTACA
NAAACGGTGAAGCCCACATAATTTCGGTAGGTAGGNCTTTAAGGCAGTGGTTGTTCGACT
CCGGTTTGGGTCCAAAGTCGGTACACAGGAAGCCGTAGTNACTCCCAGTGGTTATATGGG
TATCCCAAANTATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4210#0      ------------------------------------------------------------
consensus_4210#1      GCAGAATCGCCACGAGGTAACTTAACGAGGATCAACACAGCTAAAATGGAGCGAAATAAA 60
                                                                                  

consensus_4210#0      --------------CCGCGGACGCGTGGG-----CAAACTCTCATCAGACGTATACATAG 41
consensus_4210#1      AAACAAACAAACAACTACGAATGTATCGATGGATCAAACTCTCATCAGACGTATACATAG 120
                                    *  ** * *  * *      **************************

consensus_4210#0      AAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCTAGTATGTAATT 101
consensus_4210#1      AAGCTCGAAATCGGAATTCAGCAAAGGAAGCAAAACAAAGCGCATATCT-GTATGTAATT 179
                      ************************************************* **********

consensus_4210#0      AACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACT 161
consensus_4210#1      AACCTGTGTAACCTCCTATCTAGTCCAGATATATTCGTGCTAAATTTTAAACCGCTAACT 239
                      ************************************************************

consensus_4210#0      CTGACCATATATATATATATATATACATATTCGTACGTGTGCTG-AATATTCTTAAAA-C 219
consensus_4210#1      CTGACCATATATATA--------TACATATTCGTACGTGTGCTGGAATATTCTTAAAAAC 291
                      ***************        ********************* ************* *

consensus_4210#0      AAACTCTTT-GCGTCGTTCGG-ATCG-TGTGG-TCCGG--AACGATCGG--TTCCACC-- 269
consensus_4210#1      AAACTCTTTTGCGTCGTTCGGCATCGGTGTGGGTCTGGGTAACGATCAAGTTNCCACCCG 351
                      ********* *********** **** ***** ** **  *******    * *****  

consensus_4210#0      -TAAGTAAACCTCTTTTGCCAAGTAGCATCGGATAA--TGAATCGGTAAAACGTGAGCCA 326
consensus_4210#1      TNAGGTTGANTTCCCGTCCTTTTTGGCCAAGGGTAAGCCAGTCCGGGATTAAGTGG---A 408
                        * **  *  **   * *    * **   ** ***       *** *  * ***    *

consensus_4210#0      TATTCGTGTAGCTTAGC----ATGTTTA-ATCGTTGGTCACTCGTCCAGACTATAATCCA 381
consensus_4210#1      CATTCGGGTACANAAACGGTGAAGCCCACATAATT--TCGGTAGGTAGGNCTTTAAGGCA 466
                       ***** ***    * *    * *   * **  **  **  * *    * ** ***  **

consensus_4210#0      TGTTTGGTTCCATTGCGGTCAAACAGAATCGATTATTAGACGTGGACATCGTCGTGTGTC 441
consensus_4210#1      GTGGTTGTTCGACTCCGGTT---TGGGTCCAA--AGTCGGTACACAGGAAGCCGTA-GTN 520
                          * **** * * ****      *   * *  * * *      *    * ***  ** 

consensus_4210#0      ACTGTTAAGTTTTGTTTGCATACGTTGCGCATTGCGTTACATTGTTTTTGTCGATCAGAG 501
consensus_4210#1      ACTCCCAGTGGTTATATGGGTA--TCCCAAANTATGG----------------------- 555
                      ***   *    ** * **  **  *  *  * *  *                        

consensus_4210#0      GATTGTTTTAAGCGCACTATTTGGTTGCAACTTTCCTATGATTGGCGTGCAGAGCTTACC 561
consensus_4210#1      ------------------------------------------------------------
                                                                                  

consensus_4210#0      TTTCATTAAGGTTTGGGTGTGTCTTTAGCACCCATGAACTATTGTACAGGGTTTTAAGAC 621
consensus_4210#1      ------------------------------------------------------------
                                                                                  

consensus_4210#0      GTTAGTTTGCAGCGAACAGGATCCCCCAAAACAGGAACAGGCTTATTTGGCGCGTAACTG 681
consensus_4210#1      ------------------------------------------------------------
                                                                                  

consensus_4210#0      AAACAATGTAACCCGGCGAGATATTATTGTTGCTGATTACATTGGAACTTTTATAAACAA 741
consensus_4210#1      ------------------------------------------------------------
                                                                                  

consensus_4210#0      ACCCGATTTTTCTCCTGGTGCTTTTATTCAAAACTTCCCAATTTAACTCCACGCAAATGG 801
consensus_4210#1      ------------------------------------------------------------
                                                                                  

consensus_4210#0      GTTGGACTCCCGGTAACGGCCACGACAATTTAACACNNTTGGCCTGGACTNGCAAGGTCC 861
consensus_4210#1      ------------------------------------------------------------
                                                                                  

consensus_4210#0      CGCGTCACATTCGGGGGCGACACAGNTACTTACGGNACAAGGTGGANTCCCGGCGCAGGG 921
consensus_4210#1      ------------------------------------------------------------
                                                                                  

consensus_4210#0      TTNAACACCATTNTGATCGCACCCCANTAATTTTTTTACCACGAACAGCCACCTTGGGTG 981
consensus_4210#1      ------------------------------------------------------------
                                                                                  

consensus_4210#0      TGCCGG 987
consensus_4210#1      ------