cluster # 4211

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Anopheles gambiae
cluster # 4211 cluster # 4211 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4211#0 length = 647 sequences # 2

consensus_4211#1 length = 591 sequences # 1

consensusID : consensus_4211#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 647
fasta sequence

                              [CCGTTGGTGCGTAGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTACCCCAACTGTTGGTGTTTCGTGCAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCTCACCAACAAACGGGAGCTGATTAACACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGGACGCCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCACGCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGCGTACGCATATGAGGCGAACCAGCCCGAACTGAAAATATAGCTTTTTAATATAAACTAACCCTTATAAACCCGT]

[+] EMBL BM587020             [CCGTTGGTGCGTAGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTACCCCAACTGTTGGTGTTTCGTGCAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCTCACCAACAAACGGGAGCTGATTAACACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGGACGCCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCACGCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGCGTACGCATATGAGGCGAACCAGCCCGAACTGAAAATATAGCTTTTTAATATAAACTAACCCTTATAAACCCGT]
[+] EMBL BM638724             [       ccgGTAGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTGCCCCGACTGTTGGCGTTTCGGACAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCTCACCAACAAACGGGAGCTGATTAGCACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGGACGTCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATCCTCGAGCACGCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGTGTACGCATATGAGGCGAACCAGCCCGAACTGAAAATAT                                   ]




>consensus_4211#0
CCGTTGGTGCGTAGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTACCCCAACTGTT
GGTGTTTCGTGCAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCG
CCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGT
GTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCT
CACCAACAAACGGGAGCTGATTAACACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCT
GTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGG
ACGCCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTA
CGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCACGC
ACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCC
GGAGTCGCACCACTCTCACACTCTCCTTCTCCGCGTACGCATATGAGGCGAACCAGCCCG
AACTGAAAATATAGCTTTTTAATATAAACTAACCCTTATAAACCCGT

consensusID : consensus_4211#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [CCGCCCACGCGTCCGGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTGCCCCGACTGTTGGCGTTTCGGACAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCTCACCAACAAACGGGAGCTGATTAGCACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGGACGTCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCACGCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGTGTACGCATATGAGGC]

[+] EMBL BM650974             [CCGCCCACGCGTCCGGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTGCCCCGACTGTTGGCGTTTCGGACAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCTCACCAACAAACGGGAGCTGATTAGCACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGGACGTCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCACGCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGTGTACGCATATGAGGC]




>consensus_4211#1
CCGCCCACGCGTCCGGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTGCCCCGACTG
TTGGCGTTTCGGACAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGAT
CGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAA
GTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAAT
CTCACCAACAAACGGGAGCTGATTAGCACCCGCTTCACTGGAGCCACTGGCCGCGCCTAT
CTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACC
GGACGTCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATG
TACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCAC
GCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGAT
CCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGTGTACGCATATGAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4211#0      CCGTTGGTGCGT--AGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTACCCCAACTG 58
consensus_4211#1      CCGCCCACGCGTCCGGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTGCCCCGACTG 60
                      ***     ****   *********************************** **** ****

consensus_4211#0      TTGGTGTTTCGTGCAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGAT 118
consensus_4211#1      TTGGCGTTTCGGACAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGAT 120
                      **** ******  ***********************************************

consensus_4211#0      CGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAA 178
consensus_4211#1      CGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAA 180
                      ************************************************************

consensus_4211#0      GTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAAT 238
consensus_4211#1      GTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAAT 240
                      ************************************************************

consensus_4211#0      CTCACCAACAAACGGGAGCTGATTAACACCCGCTTCACTGGAGCCACTGGCCGCGCCTAT 298
consensus_4211#1      CTCACCAACAAACGGGAGCTGATTAGCACCCGCTTCACTGGAGCCACTGGCCGCGCCTAT 300
                      ************************* **********************************

consensus_4211#0      CTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACC 358
consensus_4211#1      CTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACC 360
                      ************************************************************

consensus_4211#0      GGACGCCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATG 418
consensus_4211#1      GGACGTCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATG 420
                      ***** ******************************************************

consensus_4211#0      TACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCAC 478
consensus_4211#1      TACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCAC 480
                      ************************************************************

consensus_4211#0      GCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGAT 538
consensus_4211#1      GCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGAT 540
                      ************************************************************

consensus_4211#0      CCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGCGTACGCATATGAGGCGAACCAGCC 598
consensus_4211#1      CCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGTGTACGCATATGAGGC--------- 591
                      *********************************** ***************         

consensus_4211#0      CGAACTGAAAATATAGCTTTTTAATATAAACTAACCCTTATAAACCCGT 647
consensus_4211#1      -------------------------------------------------