cluster # 4215

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Anopheles gambiae
cluster # 4215 cluster # 4215 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4215#0 length = 1092 sequences # 2

consensus_4215#1 length = 593 sequences # 1

consensusID : consensus_4215#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1092
fasta sequence

                              [AGGAAGCGAGTGTTATCGAAATTCGAATGGAAATCCTTAGAAAATGCGAACCATTCCGAAATGGGAAACGAAAAAAAAAAAACATTCAACACGAACACATGTCACCCTGTACAGTGTAGCAAATTGGAACATTAATATGTATGTGTGTGTGTGTTTGTGATTAAGTTCTGTAAAAGGAGAAGAGAATCGTGGCAAAGAGAAGAAAAGAAAAGAAAAAAACATAAACACCCAAAAATGAAACAGCATCCAAATCTTGAAACAAAAAACGAAAAAACAACTCATAATAAAAAAAAACATTTATCGCAAATAGCAACAAAAAAAAAAAAGAACAGTTAAAACACATTAAACCATCGAAAGGAAACGATTTCGAACAAAATCAACCATACGGCAACGCGAAACCCAGTAGTGCGAAAGGAGAGAGGGAAAATGTGAACCTGGGCGAAAACCAAAGACTTTACGATGAATAATGGAAACACTGAAAAGGAGAGAAAAAGTAAAACAAGAGTACCCGATAGCTAACGCGATTGTGAAACGTACAGAGCAACAATGAACGGGCGAAGGGAAAACAAAGAAACGACGCAAACTAGAAGTGTAGTAGGAAAAAAACAAAAACTATAGTAAAAAAGCTCAAGCTTGCAAAAAAAAAACAAAACCGATAAACAGAGAGGAAAGTGTAAGCCCATTGTAGGGAAATGATGAAACCTGAGAATGGGGGGAAAAAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCGAGATGATGAAAAGAACAGAAAGCGAAGAAAAACCCTTGTGCAAGCACACAAACACACATACCTTCTTATATATACATATACCTTTAGTGAAAAGAAGTAAAGAAACAAGCCCCTAGCCCGCGCAGGATGAGAGGAAAACCCCGGCTCGCTGTCCGGGAAAAGTTCGTCCCGAAGTGGGTGGATAAAAACCGAGAGGGCTGCTTAACTCTGTGTTTAGTTAAAACAAAAACGCGAAGCCGAACGGGAGCGGGTACGGTGTGGTGGTACAGTNTAAAACGGCCCCCCGGTTTTCCCCGCCGCTCGAAAACACTAAANGCGCCCTCCCCCGTAACCGCCCTG]

[+] EMBL BX612144             [AGGAAGCGAGTGTTATCGAAATTCGAATGGAAATCCTTAGAAAATGCGAACCATTCCGAAATGGGAAACGAAAAAAAAAAAACATTCAACACGAACACATGTCACCCTGTACAGTGTAGCAAATTGGAACATTAATATGTATGTGTGTGTGTGTTTGTGATTAAGTTCTGTAAAAGGAGAAGAGAATCGTGGCAAAGAGAAGAAAAGAAAAGAAAAAAACATAAACACCCAAAAATGAAACAGCATCCAAATCTTGAAACAAAAAACGAAAAAACAACTCATAATAAAAAAAAACATTTATCGCAAATAGCAACAAAAAAAAAAAAGAACAGTTAAAACACATTAAACCATCGAAAGGAAACGATTTCGAACAAAATCAACCATACGGCAACGCGAAACCCAGTAGTGCGAAAGGAGAGAGGGAAAATGTGAACCTGGGCGAAAACCAAAGACTTTACGATGAATAATGGAAACACTGAAAAGGAGAGAAAAAGTAAAACAAGAGTACCCGATAGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX622669             [                                                                                                                                                                                                                                                                                                                                                                                                                CAGTAGTGCGAAAGGAGAGAGGGAAAATGTGAACCTGGGCGAAAACCAAAGACTTTACGATGAATAATGGAAACACTGAAAAGGAGAGAGAAAGTAAAACAAGAGTACCCGATAGCTAACGCGATTGTGAAACGTACAGAGCAACAATGAACGGGCGAAGGGAAAACAAAGAAACGACGCAAACTAGAAGTGTAGTAGGAAAAAAACAAAAACTATAGTAAAAAAGCTCAAGCTTGCAAAAAAAAAACAAAACCGATAAACAGAGAGGAAAGTGTAAGCCCATTGTAGGGAAATGATGAAACCTGAGAATGGGGGGAAAAAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCGAGATGATGAAAAGAACAGAAAGCGAAGAAAAACCCTTGTGCAAGCACACAAACACACATACCTTCTTATATATACATATACCTTTAGTGAAAAGAAGTAAAGAAACAAGCCCCTAGCCCGCGCAGGATGAGAGGAAAACCCCGGCTCGCTGTCCGGGAAAAGTTCGTCCCGAAGTGGGTGGATAAAAACCGAGAGGGCTGCTTAACTCTGTGTTTAGTTAAAACAAAAACGCGAAGCCGAACGGGAGCGGGTACGGTGTGGTGGTACAGTNTAAAACGGCCCCCCGGTTTTCCCCGCCGCTCGAAAACACTAAANGCGCCCTCCCCCGTAACCGCCCTG]




>consensus_4215#0
AGGAAGCGAGTGTTATCGAAATTCGAATGGAAATCCTTAGAAAATGCGAACCATTCCGAA
ATGGGAAACGAAAAAAAAAAAACATTCAACACGAACACATGTCACCCTGTACAGTGTAGC
AAATTGGAACATTAATATGTATGTGTGTGTGTGTTTGTGATTAAGTTCTGTAAAAGGAGA
AGAGAATCGTGGCAAAGAGAAGAAAAGAAAAGAAAAAAACATAAACACCCAAAAATGAAA
CAGCATCCAAATCTTGAAACAAAAAACGAAAAAACAACTCATAATAAAAAAAAACATTTA
TCGCAAATAGCAACAAAAAAAAAAAAGAACAGTTAAAACACATTAAACCATCGAAAGGAA
ACGATTTCGAACAAAATCAACCATACGGCAACGCGAAACCCAGTAGTGCGAAAGGAGAGA
GGGAAAATGTGAACCTGGGCGAAAACCAAAGACTTTACGATGAATAATGGAAACACTGAA
AAGGAGAGAAAAAGTAAAACAAGAGTACCCGATAGCTAACGCGATTGTGAAACGTACAGA
GCAACAATGAACGGGCGAAGGGAAAACAAAGAAACGACGCAAACTAGAAGTGTAGTAGGA
AAAAAACAAAAACTATAGTAAAAAAGCTCAAGCTTGCAAAAAAAAAACAAAACCGATAAA
CAGAGAGGAAAGTGTAAGCCCATTGTAGGGAAATGATGAAACCTGAGAATGGGGGGAAAA
AGAGCAAGAAAGTTCCCGTAGAGATATCTTGCGAGATGATGAAAAGAACAGAAAGCGAAG
AAAAACCCTTGTGCAAGCACACAAACACACATACCTTCTTATATATACATATACCTTTAG
TGAAAAGAAGTAAAGAAACAAGCCCCTAGCCCGCGCAGGATGAGAGGAAAACCCCGGCTC
GCTGTCCGGGAAAAGTTCGTCCCGAAGTGGGTGGATAAAAACCGAGAGGGCTGCTTAACT
CTGTGTTTAGTTAAAACAAAAACGCGAAGCCGAACGGGAGCGGGTACGGTGTGGTGGTAC
AGTNTAAAACGGCCCCCCGGTTTTCCCCGCCGCTCGAAAACACTAAANGCGCCCTCCCCC
GTAACCGCCCTG

consensusID : consensus_4215#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [GGGGAAAAAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCTAGATGATGAAAAGAACAGAAAGCGAAGAAAAACCCTTGTGCTGTGGCTCCTCCGATTATCTTCCGATCTCTTAGTCCGATCCCCCTAAAGCTTTGTTGGGTGCTGAGGGATGTGTATGTTAGTGTGTGTGTGTTTTTTTGCGTTCATTTTGTGCGCCTAGGGCGCGCTGCTGCCTCCTCCACTCTTGGGGTAACCTTTTTGGGCATCGCTCGCACCTTCTCCACTTAGCAGAGCTGCGCGCTCCACACGGTTACGTACACGTCCAAGCGCAAGAAACACACACACACACACGTACGCGCGCACAAGTCGTGTACTTCAGGAACCGAAGGGTTGTTGTTTTTTTCTTTCTCATCTTGCACATTGCATCGCATTGTTGTCGCACACTACTCTTGGTCGTCGTTTTTATCTCTTTCACTCTGTGTGGTTTTTTGTTGTTGTTCTTGCTGGAACTTCTTCGCTCTCGGGTGGGGTTTTGTGGCGCTTTTTGCGGTGCAATCTCCTTGTCCTCTTCGTCGGTGCTCTTGGTGTGTCTGTCTTTTTGGCTAGAAGTAG]

[+] EMBL BX609825             [GGGGAAAAAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCTAGATGATGAAAAGAACAGAAAGCGAAGAAAAACCCTTGTGCTGTGGCTCCTCCGATTATCTTCCGATCTCTTAGTCCGATCCCCCTAAAGCTTTGTTGGGTGCTGAGGGATGTGTATGTTAGTGTGTGTGTGTTTTTTTGCGTTCATTTTGTGCGCCTAGGGCGCGCTGCTGCCTCCTCCACTCTTGGGGTAACCTTTTTGGGCATCGCTCGCACCTTCTCCACTTAGCAGAGCTGCGCGCTCCACACGGTTACGTACACGTCCAAGCGCAAGAAACACACACACACACACGTACGCGCGCACAAGTCGTGTACTTCAGGAACCGAAGGGTTGTTGTTTTTTTCTTTCTCATCTTGCACATTGCATCGCATTGTTGTCGCACACTACTCTTGGTCGTCGTTTTTATCTCTTTCACTCTGTGTGGTTTTTTGTTGTTGTTCTTGCTGGAACTTCTTCGCTCTCGGGTGGGGTTTTGTGGCGCTTTTTGCGGTGCAATCTCCTTGTCCTCTTCGTCGGTGCTCTTGGTGTGTCTGTCTTTTTGGCTAGAAGTAG]




>consensus_4215#1
GGGGAAAAAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCTAGATGATGAAAAGAACAGA
AAGCGAAGAAAAACCCTTGTGCTGTGGCTCCTCCGATTATCTTCCGATCTCTTAGTCCGA
TCCCCCTAAAGCTTTGTTGGGTGCTGAGGGATGTGTATGTTAGTGTGTGTGTGTTTTTTT
GCGTTCATTTTGTGCGCCTAGGGCGCGCTGCTGCCTCCTCCACTCTTGGGGTAACCTTTT
TGGGCATCGCTCGCACCTTCTCCACTTAGCAGAGCTGCGCGCTCCACACGGTTACGTACA
CGTCCAAGCGCAAGAAACACACACACACACACGTACGCGCGCACAAGTCGTGTACTTCAG
GAACCGAAGGGTTGTTGTTTTTTTCTTTCTCATCTTGCACATTGCATCGCATTGTTGTCG
CACACTACTCTTGGTCGTCGTTTTTATCTCTTTCACTCTGTGTGGTTTTTTGTTGTTGTT
CTTGCTGGAACTTCTTCGCTCTCGGGTGGGGTTTTGTGGCGCTTTTTGCGGTGCAATCTC
CTTGTCCTCTTCGTCGGTGCTCTTGGTGTGTCTGTCTTTTTGGCTAGAAGTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4215#0      AGGAAGCGAGTGTTATCGAAATTCGAATGGAAATCCTTAGAAAATGCGAACCATTCCGAA 60
consensus_4215#1      ------------------------------------------------------------
                                                                                  

consensus_4215#0      ATGGGAAACGAAAAAAAAAAAACATTCAACACGAACACATGTCACCCTGTACAGTGTAGC 120
consensus_4215#1      ------------------------------------------------------------
                                                                                  

consensus_4215#0      AAATTGGAACATTAATATGTATGTGTGTGTGTGTTTGTGATTAAGTTCTGTAAAAGGAGA 180
consensus_4215#1      ------------------------------------------------------------
                                                                                  

consensus_4215#0      AGAGAATCGTGGCAAAGAGAAGAAAAGAAAAGAAAAAAACATAAACACCCAAAAATGAAA 240
consensus_4215#1      ------------------------------------------------------------
                                                                                  

consensus_4215#0      CAGCATCCAAATCTTGAAACAAAAAACGAAAAAACAACTCATAATAAAAAAAAACATTTA 300
consensus_4215#1      ------------------------------------------------------------
                                                                                  

consensus_4215#0      TCGCAAATAGCAACAAAAAAAAAAAAGAACAGTTAAAACACATTAAACCATCGAAAGGAA 360
consensus_4215#1      ------------------------------------------------------------
                                                                                  

consensus_4215#0      ACGATTTCGAACAAAATCAACCATACGGCAACGCGAAACCCAGTAGTGCGAAAGGAGAGA 420
consensus_4215#1      ------------------------------------------------------------
                                                                                  

consensus_4215#0      GGGAAAATGTGAACCTGGGCGAAAACCAAAGACTTTACGATGAATAATGGAAACACTGAA 480
consensus_4215#1      ------------------------------------------------------GGGGAA 6
                                                                               ***

consensus_4215#0      AAGGAGAGAAAAAGTAAAACAAGAGTACCCGATAGCTAACGCGATTGTGAAACGTACAGA 540
consensus_4215#1      AAAGAGCAAGAAAGTTCCCGTAGAG------ATATCTTGCTAGATGATGAAAAGAACAGA 60
                      ** ***  * *****      ****      *** **  *  ***  ***** * *****

consensus_4215#0      GCAACAATGAACGGGCGAAGGGAAAACAAAGAAACGACGCAAACTAGAAGTGTAGTAGGA 600
consensus_4215#1      A-AGCGAAGAAAAACCCTTGTGCTGTGGCTCCTCCGATTATCTTCCGATCTCTTAGTCCG 119
                        * * * ***    *   * *            ***         **  * *       

consensus_4215#0      AAAAAACAAAAACTATAGTAAAAAAGCTCAAGCTTGCAAAAAAAAA-ACAAAACCGATAA 659
consensus_4215#1      ATCCCCCTAAAGCTTTGTTGGG--TGCTGAGGGATGTGTATGTTAGTGTGTGTGTGTTTT 177
                      *     * *** ** *  *      *** * *  **   *    *          * *  

consensus_4215#0      ACAGAGAGGAAAGTGTAAGCCCATTGTAGGGAAATGATGAAACCTGAGAATGGGGGGAAA 719
consensus_4215#1      TTTGCGTTCATTTTGTGCGCCTAGGGCGCGC---TGCTGCCTCCTCCACTCTTGGGGTAA 234
                         * *   *   ***  *** *  *   *    ** **   ***        **** **

consensus_4215#0      AAGAGCAAGAAAGTTCCCGTAGAGATATCTTGCGAGATGATGAAAAGAACAGAAAGCGAA 779
consensus_4215#1      CCTTTTTGGGCATCGCTCGCA----CCTTCTCCACTTAGCAGAGCTGCGCGCTCCACACG 290
                              *  *   * ** *      *  * *     *  **   *  *      *   

consensus_4215#0      GAAAAACCCTTGTGCAAGCACACAAACACACATACCTTCTTATATATACATATACCTTTA 839
consensus_4215#1      GTTACGTACACGTCCAAGCGCAAGAA-ACACACACACACACACGTACGCGCGCACAAGTC 349
                      *  *    *  ** ***** **  ** ***** **   *  *  **  *    **   * 

consensus_4215#0      GTGAAAAGAAGTAAAGAAACAAGCCCCTAGCCCGCGCAGGATGAGAG-GAAAACCCCGGC 898
consensus_4215#1      GTGTACTTCAGGAACCGAA-GGGTTGTTGTTTTTTTCTTTCTCATCTTGCACATTGCATC 408
                      *** *    ** **   **   *    *        *    * *    * * *   *  *

consensus_4215#0      TCGCTGTCCGGGAAAAGTTCGTCCCGAAGTGGGTGGATAAAAACCGAGAGGGCTGCTTAA 958
consensus_4215#1      GCATTGTTGTCGCACACTAC-TCTTG--GTCGTCGTTTTTATCTCTTTCACTCTGTGTGG 465
                       *  ***    * * * * * **  *  ** *  *  *  *   *       ***  *  

consensus_4215#0      CTCTGTGTT-TAGTTAAAACAAAAACGCGAAGCCGAACGGGAGCGGGTACGGTGTGGTGG 1017
consensus_4215#1      TTTTTTGTTGTTGTTCTTGCTGGAAC------TTCTTCGCTCTCGGGTGGGGTTTTGTGG 519
                       * * **** * ***    *   ***           **    *****  *** * ****

consensus_4215#0      TACAGTNTAAAACG--GCCCCCCGGTTTTCCCCGCCGCTCGAAAACACTAAANGCGCCCT 1075
consensus_4215#1      CGCTTTTTGCGGTGCAATCTCCTTGTCCTCTTCGTCGGT-----GCTCTTGGTGTGTCTG 574
                        *  * *     *    * **  **  **  ** ** *      * **    * * *  

consensus_4215#0      CCCCCGTAACC-GCCCTG- 1092
consensus_4215#1      TCTTTTTGGCTAGAAGTAG 593
                       *    *  *  *   *