cluster # 4223

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Anopheles gambiae
cluster # 4223 cluster # 4223 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4223#0 length = 574 sequences # 2

consensus_4223#1 length = 546 sequences # 1

consensusID : consensus_4223#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 574
fasta sequence

                              [CCGGCGACAACGTTAACGGAAGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAAATAGCAGCAAAAGTGAAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGAAGCAAATCATCTTGTGTGAGTACGAGAGAAGCAAAAATCAAAGAGTTTTAAACAGAGAGAAAACAAAACAACGAATACCTACAGTTGAAATTAAAAAAAAAAAAAAACAACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCCCGCGGCCCATCAACGCTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTCGCAAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCGATCCAGGCAGTAAAGATCGCAAACCTCTAGTGTCCA]

[+] EMBL BM621251             [CCGGCGACAACGTTAACGGAAGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAAATAGCAGCAAAAGTGAAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGAAGCAAATCATCTTGTGTGAGTACGAGAGAAGCAAAAATCAAAGAGTTTTAAACAGAGAGAAAACAAAACAACGAATACCTACAGTTGAAATTAAAAAAAAAAAAAAACAACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCCCGCGGCCCATCAACGCTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTCGCAAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCGATCCAGGCAGTAAAGATCGCAAACCTCTAGTGTCC ]
[+] EMBL BM583265             [           GTTAACGGAAGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAAATAGCAGCAAAAGTGAAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGAAGCAAATCATCTTGTGTGAGTACGAGAGAAGCAAAAATCAAAGAGTTTTAAACAGAGAGAAAACAAAACAACGAATACCTACAGTTGAAATT AAAAAAAAAAAAAACAACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCCCGCGGCCCATCAACGCTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTCGCAAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCGATCCAGGCAGTAAAGATCGCAAACCTCTAGTGTCCA]




>consensus_4223#0
CCGGCGACAACGTTAACGGAAGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGC
TTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAA
ATAGCAGCAAAAGTGAAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGA
AGCAAATCATCTTGTGTGAGTACGAGAGAAGCAAAAATCAAAGAGTTTTAAACAGAGAGA
AAACAAAACAACGAATACCTACAGTTGAAATTAAAAAAAAAAAAAAACAACAAATCACGT
TCTCGGTGCAGCATCGACAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCC
AGCAATTGCGAAAGAAACCCCTGAAAACATCCCGCGGCCCATCAACGCTGTTTGTGTGTG
TGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTCGC
AAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCGAT
CCAGGCAGTAAAGATCGCAAACCTCTAGTGTCCA

consensusID : consensus_4223#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAAATAGCAGCAAAAGTGAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGAAGCAAATCATCTTATGTGAGTACGAGAGAAGCAAAAAAAAAAATCAAAGAGTTTTAAACAGAGAGAGAAAAAAACCAACAAATAGCTACAGTTGAAATTGAAAAAAAAAAAACAACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCACGCGGCCCATCAACGCTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTTGCAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCG]

[+] EMBL BM624314             [CCGCGGACGCGTGGGCGGACGCGTGGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTGCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAAGAAAATAGCAGCAAAAGTGAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAGTGAAGCAAATCATCTTATGTGAGTACGAGAGAAGCAAAAAAAAAAATCAAAGAGTTTTAAACAGAGAGAGAAAAAAACCAACAAATAGCTACAGTTGAAATTGAAAAAAAAAAAACAACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAAGATTCATCAATTTTTTGAGTGCGAATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCACGCGGCCCATCAACGCTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTTGGCAGTTGCAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACATCCATCG]




>consensus_4223#1
CCGCGGACGCGTGGGCGGACGCGTGGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTTG
CCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGAA
GAAAATAGCAGCAAAAGTGAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAAAG
TGAAGCAAATCATCTTATGTGAGTACGAGAGAAGCAAAAAAAAAAATCAAAGAGTTTTAA
ACAGAGAGAGAAAAAAACCAACAAATAGCTACAGTTGAAATTGAAAAAAAAAAAACAACA
AATCACGTTCTCGGTGCAGCATCGACAAAAAAAGATTCATCAATTTTTTGAGTGCGAATT
TTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCACGCGGCCCATCAACGCTGT
TTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCAATTT
GGCAGTTGCAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAAAACAT
CCATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4223#0      CCGGCGACAACGTTAACGGA-----AGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTT 55
consensus_4223#1      -CCGCGGACGCGTGGGCGGACGCGTGGGTCGCGCTGTTTCGCATCCCCGCAGAAATTTTT 59
                       * ***    ***   ****      **********************************

consensus_4223#0      GCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGA 115
consensus_4223#1      GCCGCTTATTGCTTATTAATCTATCGTAATATCGTGTGAAAATTCCATCGTCTTTACGGA 119
                      ************************************************************

consensus_4223#0      AGAAAATAGCAGCAAAAGTGAAAGCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAA 175
consensus_4223#1      AGAAAATAGCAGCAAAAGTGAA-GCAAAAAATATATATGTATCGCGCGAGTGCAAGCAAA 178
                      ********************** *************************************

consensus_4223#0      AGTGAAGCAAATCATCTTGTGTGAGTACGAGAGAAGCAAAAA------TCAAAGAGTTTT 229
consensus_4223#1      AGTGAAGCAAATCATCTTATGTGAGTACGAGAGAAGCAAAAAAAAAAATCAAAGAGTTTT 238
                      ****************** ***********************      ************

consensus_4223#0      AAACAGAGAGAAAACAAAAC-AACGAATACCTACAGTTGAAATTAAAAAAAAAAAAAAAC 288
consensus_4223#1      AAACAGAGAGAGAAAAAAACCAACAAATAGCTACAGTTGAAATTGAAAAAAAAAAAA--C 296
                      *********** ** ***** *** **** ************** ************  *

consensus_4223#0      AACAAATCACGTTCTCGGTGCAGCATCGACAAAAAA-GATTCATCAATTTTTTGAGTGCG 347
consensus_4223#1      AACAAATCACGTTCTCGGTGCAGCATCGACAAAAAAAGATTCATCAATTTTTTGAGTGCG 356
                      ************************************ ***********************

consensus_4223#0      AATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCCCGCGGCCCATCAACG 407
consensus_4223#1      AATTTTGCCGCCCAGCAATTGCGAAAGAAACCCCTGAAAACATCACGCGGCCCATCAACG 416
                      ******************************************** ***************

consensus_4223#0      CTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCA 467
consensus_4223#1      CTGTTTGTGTGTGTGTCTGTTCATCGGTGTTTTCTTAGTCCTTCGAACCGGACACGAGCA 476
                      ************************************************************

consensus_4223#0      ATTTGGCAGTCGCAAAAAAACAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAA 527
consensus_4223#1      ATTTGGCAGTTGCAAAAAA-CAACGCACCAGAGAGTGAGAGATTTGAAAGCAAACAAAAA 535
                      ********** ******** ****************************************

consensus_4223#0      AACATCCATCGATCCAGGCAGTAAAGATCGCAAACCTCTAGTGTCCA 574
consensus_4223#1      AACATCCATCG------------------------------------ 546
                      ***********