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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[AGATCCCCGAGGTTAACAACACAACACAAGTGGTTTAGCATCCACCCAAAATCCAAAATAGCACTGGCTATATACCCCGAAGCTTGANTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTATAATAGATCCCCCATACAGTATTACGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCAGCACGGGACATCCAGCCAGGGCTTTCTGCACCGAATGTATACTCCTCGCCACTGGACAAGGACCCGCTGAACATCGAATCGGGTCACGAGCAAACTTAATTACACCTTGTCTGTNCAGAAAGCGAAACAGATGGGGTATTAGCCGTGGGGCGACACTTACACACNCCTCCCACCCGGTGCCTGCCATCCGGACTGGGTTCAAAACATGAGCCGAACTACCGGCCAAAAA]
[+] EMBL AL932596 [AGATCCCCGAGGTTAACAACACAACACAAGTGGTTTAGCATCCACCCAAAATCCAAAATAGCACTGGCTATATACCCCGAAGCTTGANTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTATAATAGATCCCCCATACAGTATTACGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCAGCACGGGACATCCAGCCAGGGCTTTCTGCACCGAATGTATACTCCTCGCCACTGGACAAGGACCCGCTGAACATCGAATCGGGTCACGAGCAAACTTAATTACACCTTGTCTGTNCAGAAAGCGAAACAGATGGGGTATTAGCCGTGGGGCGACACTTACACACNCCTCCCACCCGGTGCCTGCCATCCGGACTGGGTTCAAAACATGAGCCGAACTACCGGCCAAAAA]
consensusID : consensus_4226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence
[CCCGAAGCTTGAGTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTTAATAGATCCCCCATACAGTATTCGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCCAGCACGGGACATCCAGCCAGGGCTTTTGCACGATGTATACTCCTCGCACTGCACAGACCGCTGAAATCGATCGGTAGAGAAATTAATTAAACTTGTTTTTCAGAAGCGAACGTGGGGTATTGCGTGGCGCTCTTACTCTCCTCCACCCGGCTGCCTTGCCATCGGACTGCTTCAAACTGACGCGATACCGTTCAAAATCTAATTACCTTCTTCAATAATCACGATAATCTTTGACAATCGCACGGCGGCAGCGTGCGGCACAGTTTGTTTATGCTAATGNACATTTTATTTTATTTTCAC]
[+] EMBL BX624686 [CCCGAAGCTTGAGTTCGGGTGTCCGGCGAGTGCGATACGCAAATCGCTCGTTAATAGATCCCCCATACAGTATTCGTAGCTGGGTGTGCTGTTTTCTATACTCACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCACGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGACTTCTTGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGCGTCTTTTGCAAAACCATTTAATTAAAATTAACTTCACGATTATTAGGCCGCCTGGTGGAGGGCGACGGATGGGGTGAAGAACTGCCCAGCTTAGCGCAGTACCTTTCACACATACGCACCGCGTCGTTGTTCCTGTTTGTTGGCATTGCCGCCAGCACGGGACATCCAGCCAGGGCTTTTGCACGATGTATACTCCTCGCACTGCACAGACCGCTGAAATCGATCGGTAGAGAAATTAATTAAACTTGTTTTTCAGAAGCGAACGTGGGGTATTGCGTGGCGCTCTTACTCTCCTCCACCCGGCTGCCTTGCCATCGGACTGCTTCAAACTGACGCGATACCGTTCAAAATCTAATTACCTTCTTCAATAATCACGATAATCTTTGACAATCGCACGGCGGCAGCGTGCGGCACAGTTTGTTTATGCTAATGNACATTTTATTTTATTTTCAC]
consensusID : consensus_4226#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[CCGGCCGCTCGCGGCGTGCGGCACAGTTTGTTTATGCTAATGTACATTTTATTTATTTTCACCTCCCCCTCCCTATCTCTCTCTCTCTTTCCTTCTCCCTGGAGTGATCGCCTGCAAGAACGCCAACCATGCAAGAAAGGATAGAATGCTAAAATTACATTTTTTGTTGTTAAATTTTTCGGCTTTCCAAAGCACGCCCTCTGCTTTGGTCATAAATTCCTCTCCCAACAGGGTTAGAGGCTTTTTTTGGCTCCTTTAAGCCCTCAGAATTGTAACATTCCGCACCCTATTAGGTAGGTAGGTAGGTTAAGGGGTTTAGTTAGATGTTAATTATGACTAGATACTTGGCCGGTACGTGGCACAAAAAAGCGCCGTAAGGTCCGGTTCAGTTCAGTGTAAAAAGCAAAATTACGCAAGATGAAAGCAATATAATAAAGGTTGGTCTGGT]
[+] EMBL BM603028 [CCGGCCGCTCGCGGCGTGCGGCACAGTTTGTTTATGCTAATGTACATTTTATTTATTTTCACCTCCCCCTCCCTATCTCTCTCTCTCTTTCCTTCTCCCTGGAGTGATCGCCTGCAAGAACGCCAACCATGCAAGAAAGGATAGAATGCTAAAATTACATTTTTTGTTGTTAAATTTTTCGGCTTTCCAAAGCACGCCCTCTGCTTTGGTCATAAATTCCTCTCCCAACAGGGTTAGAGGCTTTTTTTGGCTCCTTTAAGCCCTCAGAATTGTAACATTCCGCACCCTATTAGGTAGGTAGGTAGGTTAAGGGGTTTAGTTAGATGTTAATTATGACTAGATACTTGGCCGGTACGTGGCACAAAAAAGCGCCGTAAGGTCCGGTTCAGTTCAGTGTAAAAAGCAAAATTACGCAAGATGAAAGCAATATAATAAAGGTTGGTCTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4226#0 AGATCCCCGAGGTTAACAACACAACACAAGTGGTTTAGCATCCACCCAAAATCCAAAATA 60
consensus_4226#1 ------------------------------------------------------------
consensus_4226#2 ------------------------------------------------------------
consensus_4226#0 GCACTGGCTATATACCCCGAAGCTTGANTTCGGGTGTCCGGCGAGTGCGATACGCAAATC 120
consensus_4226#1 ---------------CCCGAAGCTTGAGTTCGGGTGTCCGGCGAGTGCGATACGCAAATC 45
consensus_4226#2 -----------------------------CCGGCCGCTCGCGGCGTGCGGCAC--AGTTT 29
*** * ** * ***** ** * *
consensus_4226#0 GCTCGTA-TAATAGATCCCCCATACAGTATTACGTAGCTGGGTGTGCTGTTTTCTATACT 179
consensus_4226#1 GCTCGT--TAATAGATCCCCCATACAGTATT-CGTAGCTGGGTGTGCTGTTTTCTATACT 102
consensus_4226#2 GTTTATGCTAATGTACATTTTATTTATTTTCACCTCCCCCTCCCTATCTCTCTCTCTCTT 89
* * * **** * ** * * * * * * * * *** * *
consensus_4226#0 CACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCA 239
consensus_4226#1 CACTGTTAGCGATGCTTTTTTTACTGCTTAAGGACTGAAATCCATCGGTGCTAAGAATCA 162
consensus_4226#2 TCCTTCT-----CCCTGGAGTGATCGCCTGCAA---GAACGCCAACCATGCAAGAAAGGA 141
** * ** * * ** * *** *** * *** * ** *
consensus_4226#0 CGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGA 299
consensus_4226#1 CGGGACACTGTGCCCCAGCACATCTCACATCTCCGGATGCCTCCGGCTCCCAAAACTCGA 222
consensus_4226#2 TAGAATGCTAAA----ATTACATTTTTTGTTGTTAAATTTTTCGGCTTTCCAAAGCACGC 197
* * ** * **** * * ** ** * * ***** * **
consensus_4226#0 CTTCT---TGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGGGCGTCTTTTGCAAAACC 356
consensus_4226#1 CTTCT---TGGAAGCTATCTAATGAAGCCAAGGCTTTCAGGGG-CGTCTTTTGCAAAACC 278
consensus_4226#2 CCTCTGCTTTGGTCATAAATTCCTCTCCCAACAGGGTTAGAGGCTTTTTTTGGCTCCTTT 257
* *** * * ** * **** * ** ** * *** **
consensus_4226#0 ATTTAATTAAAATT--AACTTCACGA---TTATTAGGCCGCCTGGTGG---AGGGCGACG 408
consensus_4226#1 ATTTAATTAAAATT--AACTTCACGA---TTATTAGGCCGCCTGGTGG---AGGGCGACG 330
consensus_4226#2 AAGCCCTCAGAATTGTAACATTCCGCACCCTATTAGGTAGGTAGGTAGGTTAAGGGGTTT 317
* * * **** *** * ** ******* * *** * * ** *
consensus_4226#0 GATGGGGTGAAGAAC-TGCCCAG---CTTAGCGCAGTACCTTTCACACATACGCACCGCG 464
consensus_4226#1 GATGGGGTGAAGAAC-TGCCCAG---CTTAGCGCAGTACCTTTCACACATACGCACCGCG 386
consensus_4226#2 AGTTAGATGTTAATTATGACTAGATACTTGGC-CGGTACGTGGCACAAAAAAGCGCCGTA 376
* * ** * ** * ** *** ** * **** * **** * * ** ***
consensus_4226#0 TCGTT-GTTCCTGTTTGTTGGCATTGCCGC-AGCACGGGACATCCAGCCAGGGCTTTCTG 522
consensus_4226#1 TCGTT-GTTCCTGTTTGTTGGCATTGCCGCCAGCACGGGACATCCAGCCAGGGCTTT-TG 444
consensus_4226#2 AGGTCCGGTTCAGTTCAGTGTAAAAAGCAAAATTACGCAAGATGAAAGCAATATAATAAA 436
** * * * *** ** * * * *** * ** * ** *
consensus_4226#0 CACCGAATGTATACTCCTCGCCACTGGACAAGGACCCGCTGAACATCGAATCGGGTCACG 582
consensus_4226#1 CAC--GATGTATACTCCTCGC-ACTGCACAGA---CCGCTGAA-ATCGA------TCGGT 491
consensus_4226#2 GGTTGGTCTGGT------------------------------------------------ 448
*
consensus_4226#0 AGCAAACTTAATTACACCTTGTCTGTNCAGAAAGCGAAACAGATGGGGTATTAGCCGTGG 642
consensus_4226#1 AGAGAAATTAATTAAAC-TTGTTT-TTCAGAA-GCGAA---CGTGGGGTATT-------G 538
consensus_4226#2 ------------------------------------------------------------
consensus_4226#0 GGCGACACTTACACACNCCTCCCACCCGGTGCCTGCCATCCGGACTGGGTTCAAAACATG 702
consensus_4226#1 CGTGGCGCTCTTACTCTCCTCCACCCGGCTGCCTTGCCATCGGACTG--CTTCAAAC-TG 595
consensus_4226#2 ------------------------------------------------------------
consensus_4226#0 AGCCGAACTACCGGCCAAAAA--------------------------------------- 723
consensus_4226#1 ACGCGA--TACCGTTCAAAATCTAATTACCTTCTTCAATAATCACGATAATCTTTGACAA 653
consensus_4226#2 ------------------------------------------------------------
consensus_4226#0 ------------------------------------------------------------
consensus_4226#1 TCGCACGGCGGCAGCGTGCGGCACAGTTTGTTTATGCTAATGNACATTTTATTTTATTTT 713
consensus_4226#2 ------------------------------------------------------------
consensus_4226#0 ---
consensus_4226#1 CAC 716
consensus_4226#2 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||