cluster # 4234

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Anopheles gambiae
cluster # 4234 cluster # 4234 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4234#0 length = 816 sequences # 2

consensus_4234#1 length = 418 sequences # 1

consensusID : consensus_4234#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 816
fasta sequence

                              [GCATATTATTGAGTCGTACGAGTCGTACGTAAAATAATCGTTAAGTATTCCAAAGTCACACGCAACACGAATGGAATAGGGAATACTCACGCAAAATACGGCAAATCGATAGGAACAATTCAAACTGCTGAAATATTTCACAACTGCTTTGAAATATTTCAAATCGAGCCGGTCGAGCAAATGTTTCATCGATTTTCATTTAAAAATTTAACTCCAACCGTCATTTCCAATCACGTTTTGGCGGGTGATTTTGATAGGAAGAACAAAAAATATGCAAAAATACTTACCTAATCGTATGTTTAACTGTAATCAACTAAATTGTATGAAAAGTTACTTAACGAGCATCCAGCATTTGAACAATAGTTATTCGAAAATAGCTTAGTGTAAGACATTCGCAATGTAAATCAGTGTTAATTCCTTGTACTCTTCAGAGTACTTCTATCTACCTCTCTACATCCATATTAAACTATTCCAGCTAGATACGTGAAGAAGTACAAGTGATCGCACCAACAGCCACAATGACTCACCAATATGCATGCATTAAAGTGATTCATAAATCTTGATATTTTCAACGCATTAGGTAAACACAACCATGCAGAGCCAGATAACAACCATCTGTTGCTAGTGTGCGCGCTTTACATTCTGTATATTTTGGTATGTTTAGTGCGGCGTCGTCGCTGGTCGTTTTGATACAACTACAAAACTGCTTTGTACGTTTTGAAATAGTGTATGTTTAGTTTACGAATTTTACAACAACACAACGTGTAAAGAGTATTGCATCGATACAAGAGATAGTAGTATTGTGTTAAGCCGAAG]

[+] EMBL BX616681             [GCATATTATTGAGTCGTACGAGTCGTACGTAAAATAATCGTTAAGTATTCCAAAGTCACACGCAACACGAATGGAATAGGGAATACTCACGCAAAATACGGCAAATCGATAGGAACAATTCAAACTGCTGAAATATTTCACAACTGCTTTGAAATATTTCAAATCGAGCCGGTCGAGCAAATGTTTCATCGATTTTCATTTAAAAATTTAACTCCAACCGTCATTTCCAATCACGTTTTGGCGGGTGATTTTGATAGGAAGAACAAAAAATATGCAAAAATACTTACCTAATCGTATGTTTAACTGTAATCAACTAAATTGTATGAAAAGTTACTTAACGAGCATCCAGCATTTGAACAATAGTTATTCGAAAATAGCTTAGTGTAAGACATTCGCAATGTAAATCAGTGTTAATTCCTTGTACTCTTCAGAGTACTTCTATCTACCTCTCTACATCCATATTAAACTATTCCAGCTAGATACGTGAAGAAGTACAAGTGATCGCACCAACAGCCACAATGACTCACCAATATGCATGCATTAAAGTGATTCATAAATCTTGATATTTTCAACGCATTAGGTAAACACAACCATGCAGAGCCAGATAACAACCATCTGTTGCTAGTGTGCGCGCTTTACATTCTGTATATTTTGGTATGTTTAGTGCGGCGTCGTCGCTGGTCGTTTTGATACAACTACAAAAC                                                                                                                ]
[-] EMBL CNS08MR8             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATCCATATTAAACTATTCCAGTGAGATACGCGAAGCAGTACAAGCGATCGCACCAACAGCCACAATTACTCACCCACATGCATGCATTAAAGTGATTCATAAATCTTGATATTTTCAACGCATTAGGTAAACACAACCATGCAGAACCAGATAACAACCATCTGTTGCTAGTGTGCGCGCTTTACATTCTGTATATTTTGGTATGTTTTGTGCGGTATCGTCGCTGGTCGTTTGAATTCAACTACAAAACTGCTTTGTACGTTTTGAAATAGTGTATGTTTAGTTTACGAATTTTACAACAACACAACGTGTAAAGAGTATTGCATCGATACAAGAGATAGTAGTATTGTGTTAAGCCGAAG]




>consensus_4234#0
GCATATTATTGAGTCGTACGAGTCGTACGTAAAATAATCGTTAAGTATTCCAAAGTCACA
CGCAACACGAATGGAATAGGGAATACTCACGCAAAATACGGCAAATCGATAGGAACAATT
CAAACTGCTGAAATATTTCACAACTGCTTTGAAATATTTCAAATCGAGCCGGTCGAGCAA
ATGTTTCATCGATTTTCATTTAAAAATTTAACTCCAACCGTCATTTCCAATCACGTTTTG
GCGGGTGATTTTGATAGGAAGAACAAAAAATATGCAAAAATACTTACCTAATCGTATGTT
TAACTGTAATCAACTAAATTGTATGAAAAGTTACTTAACGAGCATCCAGCATTTGAACAA
TAGTTATTCGAAAATAGCTTAGTGTAAGACATTCGCAATGTAAATCAGTGTTAATTCCTT
GTACTCTTCAGAGTACTTCTATCTACCTCTCTACATCCATATTAAACTATTCCAGCTAGA
TACGTGAAGAAGTACAAGTGATCGCACCAACAGCCACAATGACTCACCAATATGCATGCA
TTAAAGTGATTCATAAATCTTGATATTTTCAACGCATTAGGTAAACACAACCATGCAGAG
CCAGATAACAACCATCTGTTGCTAGTGTGCGCGCTTTACATTCTGTATATTTTGGTATGT
TTAGTGCGGCGTCGTCGCTGGTCGTTTTGATACAACTACAAAACTGCTTTGTACGTTTTG
AAATAGTGTATGTTTAGTTTACGAATTTTACAACAACACAACGTGTAAAGAGTATTGCAT
CGATACAAGAGATAGTAGTATTGTGTTAAGCCGAAG

consensusID : consensus_4234#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [CTTCTTAATTCAGTATAACTTACCCGTATAGTAAGTCCTTGCTACGAGGGGACGATCCATTCTAGGCTTGACCCTTTGACGAGCATGTTGTTGAGTCGTACGAGTCGTACGTAAAATAATCGTTAAGTATTCCAAAGTCACACTCAACACGAATGGAATAGCGAGTATTCAAAAAAGTATGCAAAAAACGGTAAATTGATAGGAACAATTCAAACTGTTGAAATATTTCACCGCTGCTTTGAAATATTTCAAATCGAGCCGGTCGAGCAACAGTTTCATCGATTTTTATTTAAAAATTTAACTCCAAACCGTCATTTCCAATCACGTTTTGGCGGGTGATTTTGATAAGAAGAACAACAAATATGCAAAAATACTTACCTAATCGTATGTTTAACTATAATCGACTAAATCATATGAA]

[+] EMBL CNS08MR7             [CTTCTTAATTCAGTATAACTTACCCGTATAGTAAGTCCTTGCTACGAGGGGACGATCCATTCTAGGCTTGACCCTTTGACGAGCATGTTGTTGAGTCGTACGAGTCGTACGTAAAATAATCGTTAAGTATTCCAAAGTCACACTCAACACGAATGGAATAGCGAGTATTCAAAAAAGTATGCAAAAAACGGTAAATTGATAGGAACAATTCAAACTGTTGAAATATTTCACCGCTGCTTTGAAATATTTCAAATCGAGCCGGTCGAGCAACAGTTTCATCGATTTTTATTTAAAAATTTAACTCCAAACCGTCATTTCCAATCACGTTTTGGCGGGTGATTTTGATAAGAAGAACAACAAATATGCAAAAATACTTACCTAATCGTATGTTTAACTATAATCGACTAAATCATATGAA]




>consensus_4234#1
CTTCTTAATTCAGTATAACTTACCCGTATAGTAAGTCCTTGCTACGAGGGGACGATCCAT
TCTAGGCTTGACCCTTTGACGAGCATGTTGTTGAGTCGTACGAGTCGTACGTAAAATAAT
CGTTAAGTATTCCAAAGTCACACTCAACACGAATGGAATAGCGAGTATTCAAAAAAGTAT
GCAAAAAACGGTAAATTGATAGGAACAATTCAAACTGTTGAAATATTTCACCGCTGCTTT
GAAATATTTCAAATCGAGCCGGTCGAGCAACAGTTTCATCGATTTTTATTTAAAAATTTA
ACTCCAAACCGTCATTTCCAATCACGTTTTGGCGGGTGATTTTGATAAGAAGAACAACAA
ATATGCAAAAATACTTACCTAATCGTATGTTTAACTATAATCGACTAAATCATATGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4234#0      ------------------------------------------------------------
consensus_4234#1      CTTCTTAATTCAGTATAACTTACCCGTATAGTAAGTCCTTGCTACGAGGGGACGATCCAT 60
                                                                                  

consensus_4234#0      ----------------------GCATATTATTGAGTCGTACGAGTCGTACGTAAAATAAT 38
consensus_4234#1      TCTAGGCTTGACCCTTTGACGAGCATGTTGTTGAGTCGTACGAGTCGTACGTAAAATAAT 120
                                            **** ** ******************************

consensus_4234#0      CGTTAAGTATTCCAAAGTCACACGCAACACGAATGGAATAGGGAATACTCA--------C 90
consensus_4234#1      CGTTAAGTATTCCAAAGTCACACTCAACACGAATGGAATAGCGAGTATTCAAAAAAGTAT 180
                      *********************** ***************** ** ** ***         

consensus_4234#0      GCAAAATACGGCAAATCGATAGGAACAATTCAAACTGCTGAAATATTTCACAACTGCTTT 150
consensus_4234#1      GCAAAAAACGGTAAATTGATAGGAACAATTCAAACTGTTGAAATATTTCACCGCTGCTTT 240
                      ****** **** **** ******************** *************  *******

consensus_4234#0      GAAATATTTCAAATCGAGCCGGTCGAGCAAATGTTTCATCGATTTTCATTTAAAAATTTA 210
consensus_4234#1      GAAATATTTCAAATCGAGCCGGTCGAGCAACAGTTTCATCGATTTTTATTTAAAAATTTA 300
                      ******************************  ************** *************

consensus_4234#0      ACTCCAA-CCGTCATTTCCAATCACGTTTTGGCGGGTGATTTTGATAGGAAGAACAAAAA 269
consensus_4234#1      ACTCCAAACCGTCATTTCCAATCACGTTTTGGCGGGTGATTTTGATAAGAAGAACAACAA 360
                      ******* *************************************** ********* **

consensus_4234#0      ATATGCAAAAATACTTACCTAATCGTATGTTTAACTGTAATCAACTAAATTGTATGAAAA 329
consensus_4234#1      ATATGCAAAAATACTTACCTAATCGTATGTTTAACTATAATCGACTAAATCATATGAA-- 418
                      ************************************ ***** *******  ******  

consensus_4234#0      GTTACTTAACGAGCATCCAGCATTTGAACAATAGTTATTCGAAAATAGCTTAGTGTAAGA 389
consensus_4234#1      ------------------------------------------------------------
                                                                                  

consensus_4234#0      CATTCGCAATGTAAATCAGTGTTAATTCCTTGTACTCTTCAGAGTACTTCTATCTACCTC 449
consensus_4234#1      ------------------------------------------------------------
                                                                                  

consensus_4234#0      TCTACATCCATATTAAACTATTCCAGCTAGATACGTGAAGAAGTACAAGTGATCGCACCA 509
consensus_4234#1      ------------------------------------------------------------
                                                                                  

consensus_4234#0      ACAGCCACAATGACTCACCAATATGCATGCATTAAAGTGATTCATAAATCTTGATATTTT 569
consensus_4234#1      ------------------------------------------------------------
                                                                                  

consensus_4234#0      CAACGCATTAGGTAAACACAACCATGCAGAGCCAGATAACAACCATCTGTTGCTAGTGTG 629
consensus_4234#1      ------------------------------------------------------------
                                                                                  

consensus_4234#0      CGCGCTTTACATTCTGTATATTTTGGTATGTTTAGTGCGGCGTCGTCGCTGGTCGTTTTG 689
consensus_4234#1      ------------------------------------------------------------
                                                                                  

consensus_4234#0      ATACAACTACAAAACTGCTTTGTACGTTTTGAAATAGTGTATGTTTAGTTTACGAATTTT 749
consensus_4234#1      ------------------------------------------------------------
                                                                                  

consensus_4234#0      ACAACAACACAACGTGTAAAGAGTATTGCATCGATACAAGAGATAGTAGTATTGTGTTAA 809
consensus_4234#1      ------------------------------------------------------------
                                                                                  

consensus_4234#0      GCCGAAG 816
consensus_4234#1      -------