cluster # 4238

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Anopheles gambiae
cluster # 4238 cluster # 4238 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4238#0 length = 595 sequences # 2

consensus_4238#1 length = 543 sequences # 1

consensusID : consensus_4238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 595
fasta sequence

                              [CCGCCCACGCGTCCGCGGAGTACGGACGTTGCTGGTATTGCGAAGACATAGTAATTGTAATTGTACGGATAAGTTAAAAATAAAGAGTGAAAGTACAACGATACAACATTGGCGACGAGAGTTAGAAGAACCTGTGCAAACGTCGAAAGTGAAAACGCACAATGAATACCAGTGGTGCAGAGAATCATCATACGAACAATGGTGAGGGGGAGAGGCCATCGCGCAGCGGCCATCGCGGTGACACGGGAAGCGTCGATCCAACGGAATCTGGCCCCGGCTGGATTCACGAGCTGTTTCGCCAACAGCACAAGATGATGCTGGAGCAGCAACAAGCATTTATGAAGCAGCAGGAAAAGCTGATAGGCGAGATTTGGCAGACAGCGCAGCTTAAGCAGACCGTGAATGGGTCAGAGCAGCTTAGCGATGTGCTGGCGGGCCAGGTGAAAGATTTTCACTTCGATCCGGAGAGCACGACGTTCGCCGGATGGTTCTCGCGTTATGAGGATCTGTTCGAGAGGGACGCCAGTAAGCTGGAGGATGACGCGAAGGTGCGGCTGCTGCTGAGGAAGCTGGGGCAATCAGAGCATGAGCGGTA]

[+] EMBL BM584865             [CCGCCCACGCGTCCGCGGAGTACGGACGTTGCTGGTATTGCGAAGACATAGTAATTGTAATTGTACGGATAAGTTAAAAATAAAGAGTGAAAGTACAACGATACAACATTGGCGACGAGAGTTAGAAGAACCTGTGCAAACGTCGAAAGTGAAAACGCACAATGAATACCAGTGGTGCAGAGAATCATCATACGAACAATGGTGAGGGGGAGAGGCCATCGCGCAGCGGCCATCGCGGTGACACGGGAAGCGTCGATCCAACGGAATCTGGCCCCGGCTGGATTCACGAGC                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM598588             [                                          AAGACATAGTAATTGTAATTGTACGGATAAGTTAAAAATAAAGAGTGAAAGTACAACGATACAACATTGGCGACGAGAGTTAGAAGAACCTGTGCAAACGTCGAAAGTGAAAACGCACAATGAATACCAGTGGTGCAGAGAATCAGCATACGAACAATGGTGAGGGGGAGAGGCCATCGCGCAGCGGCCATCGCGGTGACACGGGAAGCGTCGATCCAACGGAATCTGGCCCCGGCTGGATTCACGAGCTGTTTCGCCAACAGCACAAGATGATGCTGGAGCAGCAACAAGCATTTATGAAGCAGCAGGAAAAGCTGATAGGCGAGATTTGGCAGACAGCGCAGCTTAAGCAGACCGTGAATGGGTCAGAGCAGCTTAGCGATGTGCTGGCGGGCCAGGTGAAAGATTTTCACTTCGATCCGGAGAGCACGACGTTCGCCGGATGGTTCTCGCGTTATGAGGATCTGTTCGAGAGGGACGCCAGTAAGCTGGAGGATGACGCGAAGGTGCGGCTGCTGCTGAGGAAGCTGGGGCAATCAGAGCATGAGCGGTA]




>consensus_4238#0
CCGCCCACGCGTCCGCGGAGTACGGACGTTGCTGGTATTGCGAAGACATAGTAATTGTAA
TTGTACGGATAAGTTAAAAATAAAGAGTGAAAGTACAACGATACAACATTGGCGACGAGA
GTTAGAAGAACCTGTGCAAACGTCGAAAGTGAAAACGCACAATGAATACCAGTGGTGCAG
AGAATCATCATACGAACAATGGTGAGGGGGAGAGGCCATCGCGCAGCGGCCATCGCGGTG
ACACGGGAAGCGTCGATCCAACGGAATCTGGCCCCGGCTGGATTCACGAGCTGTTTCGCC
AACAGCACAAGATGATGCTGGAGCAGCAACAAGCATTTATGAAGCAGCAGGAAAAGCTGA
TAGGCGAGATTTGGCAGACAGCGCAGCTTAAGCAGACCGTGAATGGGTCAGAGCAGCTTA
GCGATGTGCTGGCGGGCCAGGTGAAAGATTTTCACTTCGATCCGGAGAGCACGACGTTCG
CCGGATGGTTCTCGCGTTATGAGGATCTGTTCGAGAGGGACGCCAGTAAGCTGGAGGATG
ACGCGAAGGTGCGGCTGCTGCTGAGGAAGCTGGGGCAATCAGAGCATGAGCGGTA

consensusID : consensus_4238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [CCGCGGACGCGTGGGCGGCAGACAGCGCAGCTTAATCAGACCGTGAATGGGTCAGAGCAGCTTAGCGATGTGCTGGCGGGCCAGGTGAAAGATTTTCACTTCGATCCGGAGAGCACGACGTTCGCCGGATGGTTCTCGCGTTATGAGGATCTGTTCGAGAGGGACGCCAGTAAGCTGGAGGATGACGCGAAGGTGCGGCTGCTGCTGAGGAAGCTGGGGCAATCAGAGCATGAGCGGTACACGAGCTACGTACTGCCACGTAAGCCGAAAGACTTCAAATTCGCGGAAACTGTAAGTACGCTGAAATCGCTGTTTGGTTCTCGTGAGTCAGAGGTCAGCAAGCGGTTTAAGTGCTTGCAGTTGCAGAAAAGTGGCTTGGAAGATTACCTGACGTTCGGTTGCCGCGTAAATAAGAGTGTCGTTGAAGCAGAGCTTGCGGGGCTGACAGAGGAGCAGTTTAAATGTTTTTTATTTGTGTGCGGGCTGAAGGACGACAGAGACGCCGATGTAAGGTTGCGGTTGCTCAGCAGAATAGAGGACAAC]

[+] EMBL BM649848             [CCGCGGACGCGTGGGCGGCAGACAGCGCAGCTTAATCAGACCGTGAATGGGTCAGAGCAGCTTAGCGATGTGCTGGCGGGCCAGGTGAAAGATTTTCACTTCGATCCGGAGAGCACGACGTTCGCCGGATGGTTCTCGCGTTATGAGGATCTGTTCGAGAGGGACGCCAGTAAGCTGGAGGATGACGCGAAGGTGCGGCTGCTGCTGAGGAAGCTGGGGCAATCAGAGCATGAGCGGTACACGAGCTACGTACTGCCACGTAAGCCGAAAGACTTCAAATTCGCGGAAACTGTAAGTACGCTGAAATCGCTGTTTGGTTCTCGTGAGTCAGAGGTCAGCAAGCGGTTTAAGTGCTTGCAGTTGCAGAAAAGTGGCTTGGAAGATTACCTGACGTTCGGTTGCCGCGTAAATAAGAGTGTCGTTGAAGCAGAGCTTGCGGGGCTGACAGAGGAGCAGTTTAAATGTTTTTTATTTGTGTGCGGGCTGAAGGACGACAGAGACGCCGATGTAAGGTTGCGGTTGCTCAGCAGAATAGAGGACAAC]




>consensus_4238#1
CCGCGGACGCGTGGGCGGCAGACAGCGCAGCTTAATCAGACCGTGAATGGGTCAGAGCAG
CTTAGCGATGTGCTGGCGGGCCAGGTGAAAGATTTTCACTTCGATCCGGAGAGCACGACG
TTCGCCGGATGGTTCTCGCGTTATGAGGATCTGTTCGAGAGGGACGCCAGTAAGCTGGAG
GATGACGCGAAGGTGCGGCTGCTGCTGAGGAAGCTGGGGCAATCAGAGCATGAGCGGTAC
ACGAGCTACGTACTGCCACGTAAGCCGAAAGACTTCAAATTCGCGGAAACTGTAAGTACG
CTGAAATCGCTGTTTGGTTCTCGTGAGTCAGAGGTCAGCAAGCGGTTTAAGTGCTTGCAG
TTGCAGAAAAGTGGCTTGGAAGATTACCTGACGTTCGGTTGCCGCGTAAATAAGAGTGTC
GTTGAAGCAGAGCTTGCGGGGCTGACAGAGGAGCAGTTTAAATGTTTTTTATTTGTGTGC
GGGCTGAAGGACGACAGAGACGCCGATGTAAGGTTGCGGTTGCTCAGCAGAATAGAGGAC
AAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4238#0      CCGCCCACGCGTCCGCGGAGTACGGACGTTGCTGGTATTGCGAAGACATAGTAATTGTAA 60
consensus_4238#1      -------------------------------------CCGCGGACGCGTGGGCGGCA-GA 22
                                                             *** *  * * *        *

consensus_4238#0      TTGTACGGATAAGTTAAA--AATAAAGAGTGAAAGTACAACGATACAACATTGGCGACGA 118
consensus_4238#1      CAGCGCAGCTTAATCAGACCGTGAATGGGTCAGAGCAGCTTAGCGATGTGCTGGCGG-GC 81
                        *  * * * * * * *     ** * ** * ** *              *****  * 

consensus_4238#0      GAGTTAGAAGAACCTGTGCAAACGTCGAAAGTGAAAACGCACAATGAATA---CCAGTGG 175
consensus_4238#1      CAGGTGAAAGATTTTCACTTCGATCCGGAGAGCACGACGTTCGCCGGATGGTTCTCGCGT 141
                       ** *  ****   *          ** *    *  ***  *   * **    *  * * 

consensus_4238#0      TGCAGAGAATCATC--ATACGAACAATGGTGAGGGGGAGAGGCCATCGCGCAGCGGCCAT 233
consensus_4238#1      TATGAGGATCTGTTCGAGAGGGACGCCAGTAAGCTGGAGG----ATGACGCGAAGGT-GC 196
                      *     **    *   * * * **    ** **  ****     **  ***   **    

consensus_4238#0      CGCGGTGACACGGGAAGCGTCGATCCAACGGAATCTGGCCCCGGCTGGATTCACGAGCTG 293
consensus_4238#1      GGCTGCTGCTGAGGAAGC-TGGGGCAATCAGAGCATGAGCGGTACACGAGCTACGTACTG 255
                       ** *   *   ****** * *  * * * **   **  *    *  **   ***  ***

consensus_4238#0      TTTCGCCAACAGCACAAGATGATGCTGG-AGCAGCAACAAGCATTTATGAAGCAGCAGGA 352
consensus_4238#1      CCACGTAAGCCGAAAGACTTCAAATTCGCGGAAACTGTAAGTACGC-TGAAATCGCTGT- 313
                         **  * * * *  *  * *   * *  * * *   *** *    ****   ** *  

consensus_4238#0      AAAGCTGATAGGCGAGATTTGGCAGACAGC--GCAGCTTAAGCAGACCGTGAATGGGTCA 410
consensus_4238#1      ----TTGGTTCTCGTGAGTCAGAGGTCAGCAAGCGGTTTAAGT-GCTTGCAGTTGCAGAA 368
                           ** *   ** ** *  *  * ****  ** * *****  *   *    **    *

consensus_4238#0      GAGCAGCTTAGC-GATGTGCTGGCGG------GCCAGGTGAAAGATTTTCACTTCGATCC 463
consensus_4238#1      AAGTGGCTTGGAAGATTACCTGACGTTCGGTTGCCGCGTAAATAAGAGTGTCGTTGAAGC 428
                       **  **** *  ***   *** **       ***  ** **  *   *  * * **  *

consensus_4238#0      GGAGAGCACGACGTTCGCCGGA---TGGTTCTCGCGTTATGAGGATCTGTTCGAGAGGGA 520
consensus_4238#1      AGAGCTTGCGGGGCTGACAGAGGAGCAGTTTAAATGTTTTTTATTTGTGTGCGGGCTGAA 488
                       ***    **  * *  * *       ***     *** *     * *** ** *  * *

consensus_4238#0      CGCCAGTAAGCTGGAGGATGACGCGAAGGTGCGGCTGCTGCTGAGGAAGCTGGGGCAATC 580
consensus_4238#1      GGACGACAGA---GACGCCGATGTAAGGTTGCGGTTGCT-CAGCAGAATAGAGGACAAC- 543
                       * *   *     ** *  ** *  * * ***** **** * *  ***    ** ***  

consensus_4238#0      AGAGCATGAGCGGTA 595
consensus_4238#1      ---------------